CmoCh08G006830 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G006830
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr08 : 4367874 .. 4370573 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGGATGGTAGTTTGCAGGTCTCTTTTCAGGTATGATTCATAAAAATGAAAAACTCTGTTTGGATTCAGAGAAAATCTCCTTAAGCAATGCTCTACAAATCTTGTAATTCTACAAATTTCTGAGCTTATTGCTTTCGTAACAATGCTCGATGTTTGGCTCCATTTTCATCTTTTGAAACGGGATATAACCTAACATTAGTGGATGTTTTGATCAATCAAATAGTTCTAATTCAATCGATTAAGACTGAGAGGAAGTTTTGATCGATGTTACTTGAAAAATTATCAGTTAATCAGAGATATCTAAGCTCAATCCATGGATTGAAAGTTTCGCTCTCTTTATAAGATTCTCTGTTTGGCTGTATTTAATCTGCTGTGCTGCTTTTGTAGAGTCGACCGTCTCTTGAAATGTACAAGTCCGTATATGTCATATAGCAGCTCGTAATCTAGCTCTGAAGCTCATTATATTAACGATTAATTTGAAGTTGGAATGATTTTCTATTAAAAATATGAACGAATTATTGAATATGCCATAACTTATCTACTTTGAGTTCAGTTGTTTAGTCGTGATTTAACAATAGATTATCTTCAAGTTAGAGGAAGGGCAGGTCAAGGATATGATTAGATATGCCTTACTTATCAGCTTAAGCTTTAGAGTTGAATAGTAATTTAACACGATCTGAGCCTGAATTTGGATGTTGAAATGATGTTCTTAGTAATAAACTGGTGGTGGACTAGCTTCTAATCCTTATAAAACTGAGTTCTATTCCAATGCGTCAGGGACTCTATGCTGATGATGGTTGGAGCCTGAATGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGGTATGTGGAATTTATATTACAAAAGCATATAACTGTAGCTGTGCAGTCTGGGAATTGACAAATCAATATTTATAACCTAAACATTTCATCTAATGGTACTTATGTTTAAGTTGTGGAACAAGGAGTGAGTTGAGGCTGCTTCTGAAGTTTTGAGAGTGATTATACTTACTAATGGGACATTTTTTGTGAGATTCCACATCGATTGGTGAGGGGAACGAGTGTTAGCGAGGACACTGGGCCTCGAGTGCCGGGGGGTGGATTGTGAGATCCTATATCGGTTGAGGAGGAAAACGAATCATTCTTTATAAAGGGTATGGAGACCTCTCTCTAGCAAACATGTTTTAAAAACCTTGAGGCCCTAATCATGAGTTGCATGTTTTTTGTTGGATATTTGTATTAAAAGTAGAAAGAAAACTGTAATAGCCTAAGCCTACCGCTAGCAGATATTATCCTCTTTGAGCTTTCCCTTTCAGGCTTTCCCTCAAGGTTTTTAAAATGTGTCTGCTAGGGAGAGGTTTCCACACCCTTTTAAAGAATGTTTCGTTCCCTTCTTCAACCGAGGTGAGATCTCACATTTGTAGAGCTTGTATGTGATGACACATCTTCTTTGTGAGGTATCTCCTCTAAAATAATGGATGCATTGGATAATAGGCCATTACTAATTAAGCTGAAGGGGTTGGTGAGTTCTGTTATGTTCAAGCATCAAATTTTCTACATAGATACCATTTCAATCATAACTGCAGCCCACCAAGGATTAATACAGTCGCATTTGATTAGAAGTATCTCTATTTTGGTTTGAATCTTGTCACTTTCAACAACTTACCAAATTTACAGAAAGTGGTGTTTTTAATGATGAGATTGAATAATTTGTTTCCAAACTTTGTTTGCAAGCATTATCTTGGGAAAGTAACTTGAAGAACACTCATCTACGTAGTTTGGAAGTTCATTTTTTTTATTCCCAATAATGTCTGTGTGATATGAGGATTGTATGAGAGGTTCCTTTGCCAAAGCCCGCGTTCTCTATGCTCCTGTGGAAGAAATTGGCGATGTCAGAAGACTGTTACGAGCCTGTCATATTCATTTTATAGATTCATCTCAAACATATCCTGCAGAAAAAAATTATTCCATCTGTTTCTTTTTGGTTCAAGTTCTTAAGATAACCAAACATTTTTCACTTTTAAATTTCCTGAGCTTTTAAAGAAGTCATCATTGATGCATTTACAGAAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGGTATGTTAACAACTTCTAATACATTTCATTCCGAACTCAACCATCAAGGATCAAATATCAGAATGTTTTGTTTGTTACTTCGCGATTTGATTCGATAAATATCTTCGGAATGATTTTCTCATTATCAATATTTAGTTGCCTGCTGTTAGGAACAACGAACGTCCACATTAGTATAATATTGCCCACTTTAAGTATAAACTCCTGTGGCTTTACTTTTGGTTTTTCCAAAAGGTTTCATACCAATAGAAATAATGTGTCCTACTTATATATTCGTGACCTTCCCTTAATGAACTCCATCAATCCTTTGACACTTGCTACTGTTATAAATGCATCACCTAGAAAAATGTACACGATTTGGTTCGTTTTTTCTTCAATATGCTCATCTTTTCATGTACTTTCTAGTTCCTTCCATGTGTGAATCTCTGTTTACAATCCTGAATTGTTTGATTTCACTGTCAGGGCTGA

mRNA sequence

ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGGATGGTAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGATGGTTGGAGCCTGAATGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGAAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGGGCTGA

Coding sequence (CDS)

ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGGATGGTAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGATGGTTGGAGCCTGAATGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGAAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGGGCTGA
Homology
[Close]
BLAST of CmoCh08G006830 vs. TrEMBL
Match: A0A0A0K963_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447090 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.4e-12
Identity = 49/104 (47.12%), Postives = 57/104 (54.81%), Query Frame = 1 

Query: 2   LNDLCRSGRDQAGVADGSLQVSFQ----------------GLYADDGWSLNANMTGKKEF 61
           LN LC SGR    +     +  F+                GLYA +GW LNANMTGK EF
Sbjct: 44  LNALCSSGRQSQSLRMIVCRSLFRVDRFLKYTAPFVLHQTGLYAYNGWRLNANMTGKTEF 103

Query: 62  WSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG 90
            SAADQKKK KT+SQ WRPV  HA PSE+  L +E D  +   G
Sbjct: 104 RSAADQKKKRKTISQAWRPVCTHACPSED--LSVEDDRVESEDG 145

[Close]
BLAST of CmoCh08G006830 vs. NCBI nr
Match: gi|700190161|gb|KGN45394.1| (hypothetical protein Csa_7G447090 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-12
Identity = 49/104 (47.12%), Postives = 57/104 (54.81%), Query Frame = 1 

Query: 2   LNDLCRSGRDQAGVADGSLQVSFQ----------------GLYADDGWSLNANMTGKKEF 61
           LN LC SGR    +     +  F+                GLYA +GW LNANMTGK EF
Sbjct: 44  LNALCSSGRQSQSLRMIVCRSLFRVDRFLKYTAPFVLHQTGLYAYNGWRLNANMTGKTEF 103

Query: 62  WSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG 90
            SAADQKKK KT+SQ WRPV  HA PSE+  L +E D  +   G
Sbjct: 104 RSAADQKKKRKTISQAWRPVCTHACPSED--LSVEDDRVESEDG 145

[Close]
BLAST of CmoCh08G006830 vs. NCBI nr
Match: gi|449448002|ref|XP_004141755.1| (PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 41/64 (64.06%), Postives = 46/64 (71.88%), Query Frame = 1 

Query: 26 GLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQ 85
          GLYA +GW LNANMTGK EF SAADQKKK KT+SQ WRPV  HA PSE+  L +E D  +
Sbjct: 26 GLYAYNGWRLNANMTGKTEFRSAADQKKKRKTISQAWRPVCTHACPSED--LSVEDDRVE 85

Query: 86 KLKG 90
             G
Sbjct: 86 SEDG 87

[Close]
BLAST of CmoCh08G006830 vs. NCBI nr
Match: gi|659124468|ref|XP_008462176.1| (PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 9.0e-11
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 26 GLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEE 75
          GLYA +GW LNANMTGK EF SAADQKKK KT+SQ WRPV  HA  SE+
Sbjct: 38 GLYAYNGWRLNANMTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSED 86

[Close]
BLAST of CmoCh08G006830 vs. NCBI nr
Match: gi|659094553|ref|XP_008448125.1| (PREDICTED: uncharacterized protein LOC103490414 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 26 GLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGL----VLEK 85
          GLYA +GW LNANMTGK EF SAADQ KK KT+ Q WRPV  HA  SE+  +    V  K
Sbjct: 2  GLYAYNGWRLNANMTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVGSK 61

The following BLAST results are available for this feature:
BLAST of CmoCh08G006830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh08G006830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K963_CUCSA4.4e-1247.12Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447090 PE=4 SV=1[more]
BLAST of CmoCh08G006830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh08G006830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190161|gb|KGN45394.1|6.3e-1247.12hypothetical protein Csa_7G447090 [Cucumis sativus][more]
gi|449448002|ref|XP_004141755.1|1.1e-1164.06PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis sativus][more]
gi|659124468|ref|XP_008462176.1|9.0e-1173.47PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis melo][more]
gi|659094553|ref|XP_008448125.1|1.0e-0959.38PREDICTED: uncharacterized protein LOC103490414 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G006830.1CmoCh08G006830.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G006830CmaCh08G007200Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G006830CmaCh17G007860Cucurbita maxima (Rimu)cmacmoB375
CmoCh08G006830Csa7G447090Cucumber (Chinese Long) v2cmocuB901
CmoCh08G006830ClCG09G001840Watermelon (Charleston Gray)cmowcgB787
CmoCh08G006830CSPI07G21610Wild cucumber (PI 183967)cmocpiB914
CmoCh08G006830Lsi02G028150Bottle gourd (USVL1VR-Ls)cmolsiB810
CmoCh08G006830Cp4.1LG12g08250Cucurbita pepo (Zucchini)cmocpeB839
CmoCh08G006830CsaV3_7G033510Cucumber (Chinese Long) v3cmocucB1067
CmoCh08G006830Cla97C09G163940Watermelon (97103) v2cmowmbB918
CmoCh08G006830Carg18776Silver-seed gourdcarcmoB1018
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh08G006830CmoCh17G007530Cucurbita moschata (Rifu)cmocmoB320
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G006830Silver-seed gourdcarcmoB0169
CmoCh08G006830Silver-seed gourdcarcmoB0180
CmoCh08G006830Silver-seed gourdcarcmoB0289
CmoCh08G006830Silver-seed gourdcarcmoB1379
CmoCh08G006830Cucumber (Chinese Long) v3cmocucB1042
CmoCh08G006830Watermelon (97103) v2cmowmbB895
CmoCh08G006830Watermelon (97103) v2cmowmbB902
CmoCh08G006830Wax gourdcmowgoB1108
CmoCh08G006830Wax gourdcmowgoB1119
CmoCh08G006830Cucurbita moschata (Rifu)cmocmoB134
CmoCh08G006830Cucurbita moschata (Rifu)cmocmoB234
CmoCh08G006830Cucurbita moschata (Rifu)cmocmoB379
CmoCh08G006830Cucumber (Gy14) v1cgycmoB0989
CmoCh08G006830Cucurbita maxima (Rimu)cmacmoB280
CmoCh08G006830Cucurbita maxima (Rimu)cmacmoB491
CmoCh08G006830Wild cucumber (PI 183967)cmocpiB890
CmoCh08G006830Melon (DHL92) v3.5.1cmomeB811
CmoCh08G006830Melon (DHL92) v3.5.1cmomeB823
CmoCh08G006830Watermelon (Charleston Gray)cmowcgB805
CmoCh08G006830Watermelon (97103) v1cmowmB845
CmoCh08G006830Watermelon (97103) v1cmowmB855
CmoCh08G006830Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G006830Cucurbita pepo (Zucchini)cmocpeB854
CmoCh08G006830Cucurbita pepo (Zucchini)cmocpeB863
CmoCh08G006830Bottle gourd (USVL1VR-Ls)cmolsiB829
CmoCh08G006830Cucumber (Gy14) v2cgybcmoB429
CmoCh08G006830Cucumber (Gy14) v2cgybcmoB956
CmoCh08G006830Melon (DHL92) v3.6.1cmomedB914
CmoCh08G006830Melon (DHL92) v3.6.1cmomedB930