Carg18776 (gene) Silver-seed gourd

NameCarg18776
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionactivating signal cointegrator 1 complex subunit 1
LocationCucurbita_argyrosperma_scaffold_123 : 212128 .. 213386 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAATTAATTAATCGTTTATATTTCCATATTTCATCCTTCGCACGTGGAGAAGGTACGTGCGAATTCCTTTCTCGTCCATTATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGAATGATAGTTTGCAGGTCTCTTTTCAGGTATGATTCATAAAAATGAAAAACTCTGTTTGGATTCCGAGAAAAATGCTCTACAATTCTTGTAATTCTACAAATTTCTGAGCTTATCGCTTTCGTAACAATGCTCGATGTTTGGCTCCATTTTCATCTTTTGAAACGGGATATAACCTAACATTAGTGGATGTTTTGATCAATCAAATAGTTCGAATTCAATCGATTGAGACTGAGAGGAAGTTTTGATCGATGTTACTTGAAAAATTATCAGTTAATCAGAGATATCTAAGCTCAATCCATGGATTGAAAGTTTCGCTCTCTTTATAAGATTCTCTGTTTGCCTGTATTTAATCTGCTGTGCTGCTTTTGTAGAGTCGACCGTCTCTTGAAATGTACAAGTCCGTATATGTCATATAGCAGCTCGTAATCTAGCTCTGAAGCTCATTATATTAACGATTAATTTGAAGTTGGAATGATTTTCTATTAAAAATATGAACGAATTATTGAATATACCATAACTTATCTACTTTGAGTTCAGTTGTTTAGTCGTGATTTAACAATAGATTATCTTCAAGTGAGAGGAAGGGTAGGTCAAGGATATGATTAGATATGCCTTACTTATCAGCTTAAGCTTTAGAGTTGAATAGTAATTTAACACGATCTGAGCCTGAATTTGGATGTTGAAATGATGTTCTTAGTAATAAACTGGTGGTGGACTAGCTTCTAATCCTTATAAAACTGAGTTCTATTCCAATGCGTCAGGGACTCTATGCTGATGACGGTTGGAGCCTGAAGGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGGTATGTGGAATTTATATTACAATAGCATATAACTGTAGCCGTGCAGTTTGGGAATTGACAAATCAATATTTATAACCTAAACATTTCATCTAATGGTACTTATGTTTAAGTTGTGGAACAAGGAGTGAGTTGAGGCTGCTTCTGAAGTTCTGAGAGTGATTATACTTACTAACTGGACACTTGTTGTGAGATCCTACCTCGATTGGAGAGGGGAACGAGTGC

mRNA sequence

ATTAATTAATTAATCGTTTATATTTCCATATTTCATCCTTCGCACGTGGAGAAGGTACGTGCGAATTCCTTTCTCGTCCATTATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGAATGATAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGACGGTTGGAGCCTGAAGGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGGTATGTGGAATTTATATTACAATAGCATATAACTGTAGCCGTGCAGTTTGGGAATTGACAAATCAATATTTATAACCTAAACATTTCATCTAATGGTACTTATGTTTAAGTTGTGGAACAAGGAGTGAGTTGAGGCTGCTTCTGAAGTTCTGAGAGTGATTATACTTACTAACTGGACACTTGTTGTGAGATCCTACCTCGATTGGAGAGGGGAACGAGTGC

Coding sequence (CDS)

ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGAATGATAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGACGGTTGGAGCCTGAAGGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGGTATGTGGAATTTATATTACAATAGCATATAA

Protein sequence

MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGMWNLYYNSI
BLAST of Carg18776 vs. NCBI nr
Match: XP_022149236.1 (uncharacterized protein LOC111017681 isoform X3 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-17
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 6  CRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPV 65
          C    D+AG+ANDSLQVSFQG YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV
Sbjct: 3  CAVPVDKAGIANDSLQVSFQGHYAYNGLSLYTNMTGRKEFRSAADQKKKRKTISQAWRPV 62

Query: 66 YMHASPSEGM 76
            HASPSE +
Sbjct: 63 CTHASPSEDL 72

BLAST of Carg18776 vs. NCBI nr
Match: XP_022954065.1 (uncharacterized protein LOC111456441 isoform X2 [Cucurbita moschata])

HSP 1 Score: 97.1 bits (240), Expect = 3.1e-17
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 11 DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHAS 70
          D+AGVANDSLQVSFQGLY  +GWSL ANM GKKEF   ADQKKK KT++Q WRPV   AS
Sbjct: 8  DKAGVANDSLQVSFQGLYTYNGWSLNANMAGKKEFRRVADQKKKRKTITQAWRPVCTQAS 67

Query: 71 PSEGM 76
          PSE +
Sbjct: 68 PSEDL 72

BLAST of Carg18776 vs. NCBI nr
Match: XP_023549271.1 (activating signal cointegrator 1 complex subunit 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 11 DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHAS 70
          D+AGVANDSLQVSFQGLY  +GWSL ANM  KKEF   ADQKKK KT++Q WRPV   AS
Sbjct: 8  DKAGVANDSLQVSFQGLYTYNGWSLNANMASKKEFRRVADQKKKRKTITQAWRPVCTQAS 67

Query: 71 PSEGM 76
          PSE +
Sbjct: 68 PSEDL 72

BLAST of Carg18776 vs. NCBI nr
Match: KGN45394.1 (hypothetical protein Csa_7G447090 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 3.3e-11
Identity = 44/90 (48.89%), Postives = 50/90 (55.56%), Query Frame = 0

Query: 2   LNDLCRSGRDQAGVANDSLQVSFQ----------------GLYADDGWSLKANMTGKKEF 61
           LN LC SGR    +     +  F+                GLYA +GW L ANMTGK EF
Sbjct: 44  LNALCSSGRQSQSLRMIVCRSLFRVDRFLKYTAPFVLHQTGLYAYNGWRLNANMTGKTEF 103

Query: 62  WSAADQKKKPKTVSQTWRPVYMHASPSEGM 76
            SAADQKKK KT+SQ WRPV  HA PSE +
Sbjct: 104 RSAADQKKKRKTISQAWRPVCTHACPSEDL 133

BLAST of Carg18776 vs. NCBI nr
Match: XP_004141755.1 (PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 9.6e-11
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 26 GLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM 76
          GLYA +GW L ANMTGK EF SAADQKKK KT+SQ WRPV  HA PSE +
Sbjct: 26 GLYAYNGWRLNANMTGKTEFRSAADQKKKRKTISQAWRPVCTHACPSEDL 75

BLAST of Carg18776 vs. TrEMBL
Match: tr|A0A0A0K963|A0A0A0K963_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 44/90 (48.89%), Postives = 50/90 (55.56%), Query Frame = 0

Query: 2   LNDLCRSGRDQAGVANDSLQVSFQ----------------GLYADDGWSLKANMTGKKEF 61
           LN LC SGR    +     +  F+                GLYA +GW L ANMTGK EF
Sbjct: 44  LNALCSSGRQSQSLRMIVCRSLFRVDRFLKYTAPFVLHQTGLYAYNGWRLNANMTGKTEF 103

Query: 62  WSAADQKKKPKTVSQTWRPVYMHASPSEGM 76
            SAADQKKK KT+SQ WRPV  HA PSE +
Sbjct: 104 RSAADQKKKRKTISQAWRPVCTHACPSEDL 133

BLAST of Carg18776 vs. TrEMBL
Match: tr|A0A1S3CGC2|A0A1S3CGC2_CUCME (activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103500600 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-10
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 26 GLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM 76
          GLYA +GW L ANMTGK EF SAADQKKK KT+SQ WRPV  HA  SE +
Sbjct: 38 GLYAYNGWRLNANMTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSEDL 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149236.12.4e-1770.00uncharacterized protein LOC111017681 isoform X3 [Momordica charantia][more]
XP_022954065.13.1e-1772.31uncharacterized protein LOC111456441 isoform X2 [Cucurbita moschata][more]
XP_023549271.11.5e-1670.77activating signal cointegrator 1 complex subunit 1-like isoform X2 [Cucurbita pe... [more]
KGN45394.13.3e-1148.89hypothetical protein Csa_7G447090 [Cucumis sativus][more]
XP_004141755.19.6e-1172.00PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0K963|A0A0A0K963_CUCSA2.2e-1148.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=1[more]
tr|A0A1S3CGC2|A0A1S3CGC2_CUCME5.4e-1070.00activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo OX=3656 GN=LO... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18776-RACarg18776-RAmRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg18776Wax gourdcarwgoB0879
Carg18776Wax gourdcarwgoB0883
Carg18776Silver-seed gourdcarcarB045
Carg18776Silver-seed gourdcarcarB143
Carg18776Silver-seed gourdcarcarB234
Carg18776Silver-seed gourdcarcarB596
Carg18776Cucumber (Gy14) v2carcgybB0739
Carg18776Cucumber (Gy14) v2carcgybB0742
Carg18776Cucumber (Gy14) v1carcgyB0839
Carg18776Cucurbita maxima (Rimu)carcmaB1043
Carg18776Cucurbita maxima (Rimu)carcmaB1045
Carg18776Cucurbita moschata (Rifu)carcmoB1014
Carg18776Cucurbita moschata (Rifu)carcmoB1017
Carg18776Cucurbita pepo (Zucchini)carcpeB1051
Carg18776Cucurbita pepo (Zucchini)carcpeB1052
Carg18776Cucurbita pepo (Zucchini)carcpeB1053
Carg18776Cucurbita pepo (Zucchini)carcpeB1054
Carg18776Cucurbita pepo (Zucchini)carcpeB1055
Carg18776Wild cucumber (PI 183967)carcpiB0777
Carg18776Wild cucumber (PI 183967)carcpiB0780
Carg18776Cucumber (Chinese Long) v2carcuB0763
Carg18776Cucumber (Chinese Long) v3carcucB0780
Carg18776Cucumber (Chinese Long) v3carcucB0783
Carg18776Bottle gourd (USVL1VR-Ls)carlsiB685
Carg18776Melon (DHL92) v3.5.1carmeB0742
Carg18776Melon (DHL92) v3.5.1carmeB0741
Carg18776Melon (DHL92) v3.6.1carmedB0754
Carg18776Melon (DHL92) v3.6.1carmedB0755
Carg18776Watermelon (Charleston Gray)carwcgB0722
Carg18776Watermelon (Charleston Gray)carwcgB0725
Carg18776Watermelon (97103) v1carwmB0743
Carg18776Watermelon (97103) v1carwmB0746
Carg18776Watermelon (97103) v2carwmbB0781
Carg18776Watermelon (97103) v2carwmbB0780