CmaCh08G007200 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G007200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Eukaryotic LigT isoform 1
Location	Cma_Chr08 : 4355888 .. 4357937 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCAGGGACTCTATGCTGATAATGGTTGGAGCCTGAATGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAGAAGCCCAAAACAGTCACCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGGTATGTGGAATTTATATTACAAAAGCATATAACTGTAGCCGTGCAGTTTGGGAATTGTACAAATCAATATTTATAACCTAAACATTTCATCTAATGGTACTTATGTTTAAGTTGTGGAACAAGGAGTCAGTTGAGGCTGCTTCTGAAATTCTGAGAGTGATTATACTTACTAACTGGACATTTGTTGTGAGATTCCACCTCAATTGGAGAGGGAAACGAGTGCCAGCGAGGACACTGGGCCTCAAGTGTCAGGGGTTGGATTGTGAGATCCTATATCGGTTGAGGAAGAGAACGAATCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGAAAACGCGTTTTAAAAACCTTGAGGCCCTAATCATGAGTTGCATGTGTTTTATTTGTAGGATATTTGTATTAAAAGTAGAAAGAAAACTGTAACAGCCCAAGCCTACCGCTAGCAGACATTGTCCTCTTTGAGTTTTCCCTTTCATACTTCCCTTCAAGGTTTTTAAAACCTCTCTGTTAGGGAGAGGTTTCCACATCCTTATAAAAAATGTTTCATTCCTTCTCCAAACGAAGTGAGATCTCACATTTGTAGAGCTTGTATGTGATGACACATCTTCTTTATGAGGTATCTCCTGGATGCATTGGATAATAGGCCAATACTAATTAAGCTCAAGTGGTTGGTGAGTTCTGTTATGTTCAATCATCAAATTTTCTACATAGATACCATTTCAATCATAACTGCAGCCCACCAAGGATTAATACAGTCGCATTTGATTAGAAGTATCTATATTTTGGTTTGAATCTTCACTTTCAACAACTTACCAAATATACAGAAAGTGGTGTTTTAGTGATGAGATTGAATAATTTATTTCCAAACATTGTTTGCAAGCATTATTTTGGGAAAGTAATTTGAAAAACACTCATCTACGTAGTTTGGAAGTTCATTTTTGTTTATTCCCAATAATGTCTGTGTGATACGAGGATTGTATGAGAGGTTCTTTTGCCAAAGCCCGTGTTCTCTATGCTCCTGTGGAAGAAATTGGCGATGTCAGAATACTGTTACGAGCTTGTAATATTCATTTTATAGTTTCATCTCAAACATATCCTGCAGAAAAAAATTATTCCATCTGTTTCTTTTTTGTTCAAGTTCTTAAGAGAACCAAAAAAATTTCACTTTTAAATTTCCTGAGCTTTTTCAGAAGTCATCATTGATGCATTTACAGAAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGGTATGTTAACAACTTCTAATACATTTCATTCCGAACTCAACCATCAACGATCAAATATCAGAATGTTTTGTCTATTACTTTGCGATTTGATTCGATAAATATCTTCTGAATAATTTTCTCATTATCAATATTTAGTTGCCCTCGATAAATATCTTCTGAATAATTTTCTCATTATCAATATTTAGTTGCCCGCTGGTACGAACAACGAACGTCCACATTGGTATAATATTGTCCACTTTAAGTATAAGTTCTTGTGGCTTTACTTTTGATCTTTTCAAAAGGTCTTGTATCAATACAAATAATGTCTCTTACTTATATACTCATGATCTTCGGTTCGTTTTTTCTTCAATATGTTCATCTTTTCATGTACTTTCTAGTTCCTTCCATGTGTGAATCTCTGTTTACAATCCTGAATTGTTTGATTTCACTGTCAGGGCTGATTTCATGTCACCGCAATGCTTCAGGAATAAAAGGAAAAAGAAGAAATTCATTTGCTGCTCGTGAAATTTTCAAGCAGTATGGGTCGAAGGAGTGGAACGAGTATCATATCCGTGAAGCTCATCTCTCACAAAGATCTGCATTTGATGAAAATGGATACTGCCATTGCTGTGCTACCGAACATATGCAATTCGACTGA

mRNA sequence

ATGCGTCAGGGACTCTATGCTGATAATGGTTGGAGCCTGAATGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAGAAGCCCAAAACAGTCACCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGAGGTTCTTTTGCCAAAGCCCGTGTTCTCTATGCTCCTGTGGAAGAAATTGGCGATGTCAGAATACTGTTACGAGCTTAAGTCATCATTGATGCATTTACAGAAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGGCTGATTTCATGTCACCGCAATGCTTCAGGAATAAAAGGAAAAAGAAGAAATTCATTTGCTGCTCGTGAAATTTTCAAGCAGTATGGGTCGAAGGAGTGGAACGAGTATCATATCCGTGAAGCTCATCTCTCACAAAGATCTGCATTTGATGAAAATGGATACTGCCATTGCTGTGCTACCGAACATATGCAATTCGACTGA

Coding sequence (CDS)

ATGCGTCAGGGACTCTATGCTGATAATGGTTGGAGCCTGAATGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAGAAGCCCAAAACAGTCACCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGAGGTTCTTTTGCCAAAGCCCGTGTTCTCTATGCTCCTGTGGAAGAAATTGGCGATGTCAGAATACTGTTACGAGCTTAAGTCATCATTGATGCATTTACAGAAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGGCTGATTTCATGTCACCGCAATGCTTCAGGAATAAAAGGAAAAAGAAGAAATTCATTTGCTGCTCGTGAAATTTTCAAGCAGTATGGGTCGAAGGAGTGGAACGAGTATCATATCCGTGAAGCTCATCTCTCACAAAGATCTGCATTTGATGAAAATGGATACTGCCATTGCTGTGCTACCGAACATATGCAATTCGACTGA

Protein sequence

MRQGLYADNGWSLNANMTGKKEFWSAADQKKKPKTVTQTWRPVYMHASPSEEVLLPKPVFSMLLWKKLAMSEYCYELKSSLMHLQKLDLFWRKMQNRRLISCHRNASGIKGKRRNSFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENGYCHCCATEHMQFD

Homology

[Close]

BLAST of CmaCh08G007200 vs. TrEMBL
Match: A0A0A0K963_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447090 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-14
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 92  RKMQNRRLISCHRNASGIKGKRRNSFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENG 151
           +K++    +   R+    K K+ +SF AREIFK+YGS+EW EYHIREAHLSQR AFDENG
Sbjct: 479 QKLKLHATVMNARHRKSKKKKKFDSFDAREIFKEYGSEEWGEYHIREAHLSQRFAFDENG 538

Query: 152 YCHCCAT------EHMQFD 165
           Y HCCA+      +HMQ D
Sbjct: 539 YYHCCASIPFPHEQHMQVD 557

[Close]

BLAST of CmaCh08G007200 vs. TrEMBL
Match: B9GG58_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s18720g PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-11
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1


Query: 95  QNRRLISCHRNASGIKGKRRN-SFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENGYC 154
           Q  +L +   NA   KG+R+N SF AR IFKQ+GS++W EY IREAHLSQR  FDENGY 
Sbjct: 363 QKLKLHATVMNARHRKGRRKNDSFDARGIFKQFGSEDWGEYLIREAHLSQRFVFDENGYY 422

Query: 155 HCCAT 159
           HCCA+
Sbjct: 423 HCCAS 427

[Close]

BLAST of CmaCh08G007200 vs. TrEMBL
Match: M0RKE8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 103 HRNASGIKGKRRNSFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENGYCHCCAT---- 162
           HR   G + KR +SF AR IF+ YGS++W EYHI E HLSQR  FDE+GY HCC +    
Sbjct: 891 HRKRKGRRTKRHDSFDARHIFRVYGSEDWGEYHIPEVHLSQRFKFDESGYYHCCTSIPLP 950

Query: 163 EHMQFD 165
           E MQ D
Sbjct: 951 ESMQID 956

[Close]

BLAST of CmaCh08G007200 vs. TrEMBL
Match: A5BMM2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011439 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 110 KGKRRNSFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENGYCHCCAT----EHMQFD 165
           K ++ +SF AR IFKQYGS+EW +Y IREAHLSQR  FDENGY HCCA+    E+MQ D
Sbjct: 79  KTRKSDSFDARGIFKQYGSEEWGDYIIREAHLSQRFVFDENGYYHCCASIPFPENMQVD 137

[Close]

BLAST of CmaCh08G007200 vs. TrEMBL
Match: F6HYD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04060 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 110 KGKRRNSFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENGYCHCCAT----EHMQFD 165
           K ++ +SF AR IFKQYGS+EW +Y IREAHLSQR  FDENGY HCCA+    E+MQ D
Sbjct: 891 KTRKSDSFDARGIFKQYGSEEWGDYIIREAHLSQRFVFDENGYYHCCASIPFPENMQVD 949

[Close]

BLAST of CmaCh08G007200 vs. TAIR10
Match: AT3G16230.2 (AT3G16230.2 Predicted eukaryotic LigT)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 103 HRNASGIKGKRRNSFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENGYCHCCAT 159
           HR       K+  +F AREI KQ+G+++W EY I+EAHLSQR  FD+NGY  CC +
Sbjct: 385 HRKRRKNNKKKMETFDAREIHKQFGNEDWGEYLIQEAHLSQRFVFDQNGYYRCCGS 440

[Close]

BLAST of CmaCh08G007200 vs. TAIR10
Match: AT3G16220.1 (AT3G16220.1 Predicted eukaryotic LigT)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-10
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1


Query: 110 KGKRRNSFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENGYCHCCAT 159
           K K+ ++F AREI K++ +K+W  Y IREAH+SQR  +D NGY HCCA+
Sbjct: 203 KSKKMDTFDAREIHKEFENKDWGTYLIREAHISQRYKYDPNGYFHCCAS 251

[Close]

BLAST of CmaCh08G007200 vs. NCBI nr
Match: gi|449448002|ref|XP_004141755.1| (PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 92  RKMQNRRLISCHRNASGIKGKRRNSFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENG 151
           +K++    +   R+    K K+ +SF AREIFK+YGS+EW EYHIREAHLSQR AFDENG
Sbjct: 421 QKLKLHATVMNARHRKSKKKKKFDSFDAREIFKEYGSEEWGEYHIREAHLSQRFAFDENG 480

Query: 152 YCHCCAT------EHMQFD 165
           Y HCCA+      +HMQ D
Sbjct: 481 YYHCCASIPFPHEQHMQVD 499

[Close]

BLAST of CmaCh08G007200 vs. NCBI nr
Match: gi|700190161|gb|KGN45394.1| (hypothetical protein Csa_7G447090 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 92  RKMQNRRLISCHRNASGIKGKRRNSFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENG 151
           +K++    +   R+    K K+ +SF AREIFK+YGS+EW EYHIREAHLSQR AFDENG
Sbjct: 479 QKLKLHATVMNARHRKSKKKKKFDSFDAREIFKEYGSEEWGEYHIREAHLSQRFAFDENG 538

Query: 152 YCHCCAT------EHMQFD 165
           Y HCCA+      +HMQ D
Sbjct: 539 YYHCCASIPFPHEQHMQVD 557

[Close]

BLAST of CmaCh08G007200 vs. NCBI nr
Match: gi|659124468|ref|XP_008462176.1| (PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 43/68 (63.24%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 104 RNASGIKGKRRNSFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENGYCHCCAT----- 163
           R+    K K+ +SF AREIFKQYGS+EW EYHIREAHLSQR  FDENGY HCCA+     
Sbjct: 446 RHRKSKKKKKFDSFDAREIFKQYGSEEWGEYHIREAHLSQRFVFDENGYYHCCASIPFPH 505

Query: 164 --EHMQFD 165
             +HMQ D
Sbjct: 506 EQQHMQVD 513

[Close]

BLAST of CmaCh08G007200 vs. NCBI nr
Match: gi|224054382|ref|XP_002298232.1| (hypothetical protein POPTR_0001s18720g [Populus trichocarpa])

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-11
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1


Query: 95  QNRRLISCHRNASGIKGKRRN-SFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENGYC 154
           Q  +L +   NA   KG+R+N SF AR IFKQ+GS++W EY IREAHLSQR  FDENGY 
Sbjct: 363 QKLKLHATVMNARHRKGRRKNDSFDARGIFKQFGSEDWGEYLIREAHLSQRFVFDENGYY 422

Query: 155 HCCAT 159
           HCCA+
Sbjct: 423 HCCAS 427

[Close]

BLAST of CmaCh08G007200 vs. NCBI nr
Match: gi|147838874|emb|CAN70339.1| (hypothetical protein VITISV_011439 [Vitis vinifera])

HSP 1 Score: 76.3 bits (186), Expect = 5.7e-11
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 110 KGKRRNSFAAREIFKQYGSKEWNEYHIREAHLSQRSAFDENGYCHCCAT----EHMQFD 165
           K ++ +SF AR IFKQYGS+EW +Y IREAHLSQR  FDENGY HCCA+    E+MQ D
Sbjct: 79  KTRKSDSFDARGIFKQYGSEEWGDYIIREAHLSQRFVFDENGYYHCCASIPFPENMQVD 137

The following BLAST results are available for this feature:

BLAST of CmaCh08G007200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh08G007200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K963_CUCSA	5.0e-14	55.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447090 PE=4 SV=1	[more]
B9GG58_POPTR	2.3e-11	61.54	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s18720g PE=4 SV=1	[more]
M0RKE8_MUSAM	4.0e-11	56.06	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A5BMM2_VITVI	4.0e-11	64.41	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011439 PE=4 SV=1	[more]
F6HYD3_VITVI	4.0e-11	64.41	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04060 PE=4 SV=...	[more]

BLAST of CmaCh08G007200 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G16230.2	1.0e-10	51.79	Predicted eukaryotic LigT	[more]
AT3G16220.1	3.0e-10	55.10	Predicted eukaryotic LigT	[more]

BLAST of CmaCh08G007200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448002\|ref\|XP_004141755.1\|	7.2e-14	55.70	PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis sativus]	[more]
gi\|700190161\|gb\|KGN45394.1\|	7.2e-14	55.70	hypothetical protein Csa_7G447090 [Cucumis sativus]	[more]
gi\|659124468\|ref\|XP_008462176.1\|	7.2e-14	63.24	PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis melo]	[more]
gi\|224054382\|ref\|XP_002298232.1\|	3.4e-11	61.54	hypothetical protein POPTR_0001s18720g [Populus trichocarpa]	[more]
gi\|147838874\|emb\|CAN70339.1\|	5.7e-11	64.41	hypothetical protein VITISV_011439 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019510	Kinase-A_anchor_nucl_local_sig

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G007200.1	CmaCh08G007200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019510	Protein kinase A anchor protein, nuclear localisation signal domain	PFAM	PF10469	AKAP7_NLS	coord: 105..158 score: 9.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G007200	Csa7G447090	Cucumber (Chinese Long) v2	cmacuB915
CmaCh08G007200	CSPI07G21610	Wild cucumber (PI 183967)	cmacpiB935
CmaCh08G007200	CmoCh17G007530	Cucurbita moschata (Rifu)	cmacmoB897
CmaCh08G007200	CmoCh08G006830	Cucurbita moschata (Rifu)	cmacmoB912
CmaCh08G007200	Lsi02G028150	Bottle gourd (USVL1VR-Ls)	cmalsiB823
CmaCh08G007200	Cp4.1LG12g08250	Cucurbita pepo (Zucchini)	cmacpeB903
CmaCh08G007200	CsaV3_7G033510	Cucumber (Chinese Long) v3	cmacucB1085
CmaCh08G007200	Cla97C09G163940	Watermelon (97103) v2	cmawmbB942
CmaCh08G007200	Carg18776	Silver-seed gourd	carcmaB1046
CmaCh08G007200	Carg09509	Silver-seed gourd	carcmaB1424

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh08G007200	CmaCh17G007860	Cucurbita maxima (Rimu)	cmacmaB383

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G007200	Silver-seed gourd	carcmaB0160
CmaCh08G007200	Silver-seed gourd	carcmaB0283
CmaCh08G007200	Cucumber (Chinese Long) v3	cmacucB1059
CmaCh08G007200	Watermelon (97103) v2	cmawmbB926
CmaCh08G007200	Wax gourd	cmawgoB1109
CmaCh08G007200	Wax gourd	cmawgoB1120
CmaCh08G007200	Cucurbita maxima (Rimu)	cmacmaB119
CmaCh08G007200	Cucurbita maxima (Rimu)	cmacmaB297
CmaCh08G007200	Cucurbita maxima (Rimu)	cmacmaB441
CmaCh08G007200	Cucumber (Gy14) v1	cgycmaB0987
CmaCh08G007200	Cucurbita moschata (Rifu)	cmacmoB884
CmaCh08G007200	Cucurbita moschata (Rifu)	cmacmoB906
CmaCh08G007200	Wild cucumber (PI 183967)	cmacpiB912
CmaCh08G007200	Melon (DHL92) v3.5.1	cmameB827
CmaCh08G007200	Melon (DHL92) v3.5.1	cmameB840
CmaCh08G007200	Watermelon (Charleston Gray)	cmawcgB788
CmaCh08G007200	Watermelon (Charleston Gray)	cmawcgB809
CmaCh08G007200	Watermelon (97103) v1	cmawmB858
CmaCh08G007200	Watermelon (97103) v1	cmawmB868
CmaCh08G007200	Cucurbita pepo (Zucchini)	cmacpeB916
CmaCh08G007200	Cucurbita pepo (Zucchini)	cmacpeB921
CmaCh08G007200	Cucurbita pepo (Zucchini)	cmacpeB929
CmaCh08G007200	Bottle gourd (USVL1VR-Ls)	cmalsiB845
CmaCh08G007200	Cucumber (Gy14) v2	cgybcmaB461
CmaCh08G007200	Cucumber (Gy14) v2	cgybcmaB974
CmaCh08G007200	Melon (DHL92) v3.6.1	cmamedB925
CmaCh08G007200	Melon (DHL92) v3.6.1	cmamedB941