CmoCh08G006380 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTAGGTAAAGAAAAGCGCGAAATCCCTAATTCAGGGGTTGGTTCCGCCAGTTCCAAACCCTGCAGCGCCCGAGATTTCTTCATTTTCTTCGCCGTCTTCCTCTCTGTTGTTGCTGCACGGCCTCATTCTCTTCCTATCTCCCTTCATTCGCTTAGTCTTCTCGTTCAAGTCTGCCCATATCAAATTTTATCTTTCCATCCATTCAACGAACTTCAAAATTGGGAAATTTTGGAATTGGAGCAGTTTTGAATTCGATATAATTCTAGATTTCAAATTCATTTCGAGCTGGTTTCGATATCTGTATTTGCGTCGTAATAGCGAGTATGTATGGGAGAAAAGCATGTCAGTTGGTGAAAGAGCTAGCAAGCGGCGAGAAAGGACAGCTAGCACAGTTCAATGTAAGTCCACATGCTCGTTTTTTTTGATGTGTACGAACTGAGGTTGTTGGTCAGCTAGTATTGTGATTGCGTTTCTTTTTATATATTGACTTTTCCTATTTGCATCAGTAGGAGATCTTGGTTAGTTTTGACAGATTCGAAAAGAGTATAATTAATTTTTGTGTTCAAATGTTTGATGGAGTGGAAAATAAAATATTCATAGTATGGGTTTTTAATCTTGAGTTATGAATAGAAAATTAAAATTTTAGAAGTATATGAAATCCTGCAATCAAAATCTTAAACATTGAAATATTTGCACTCCTCGAGAGATGTTTAATTTTCTTTCACTTTAGCTGTTAATACCTCTACAACGGATGGAGTTTGCTTATTTTCACTAATACCGAGTTTGTTTGAAGTGATTGTTATACTTTTGGTGCAAATTGATCAAACAGCAGAGGCAATGTTGACTCATTAACTTTTTATCATGTATGCGTGCGTGTACAATTAACTACACGATTTCTATTGAGTTTTTAAATATGCTCTGTTTTGGATATACATTGTGAATGGTGATGGCTTTTGAGCACTTTCGGTAACAAGTAAACAACTTTAAAAGAAATTATGGTTTCTTATGATAGCAGTTCTCTGTCTCACAAATCACCGTGGTCAGTGTCCTAACGTCGAGCTATAGTGAAATTTCATAGTATATCTAATACTTTGCCATTTTGCTTTCTTATTGTCTCTGTGCTTCTCCAGAGCGACCTGTTTGAACAGGTTATTTCAGAATGCCAGCAACATCATCTTGAGCTTCAATCCTTGTTGAGGTTATAATATTCTACCTTTTCATTCACATAATTCATTAATGGATATGATATTTAGTTTTAAGTAGTAGCTGATCTGTTTCTGGTTTGTCCCATAGTAGTTGAACTGTTTGGTAGCAAAGTCGACGGTAATTAAACTGCTTCTAAGAGCATGCTCATTTGGTTAATAGTGGTTCAGTTATATATGACTAAGGAGAGCAGAATTGAGAAATGGTAGATGTTCACAGAATCAGGTCAAGGCTTCATTTCTTGACAATAGCACTTGGGAACTTTATCCGATGAACTGGTGGCCTTGGTTGGGAATAGAACTATAACATATGAACTTAAGGTAATTTTAACTTTTTAGTGAGTTTATAGTTTGAGAAATCTCCATCCATATCCCTAGGAAATCCACATCCAATGGTTTCAATCTGCATACCAGGAACTATCCCTTTAGTTCACTAATCACTACATTCCTGAACTTACTGTGGTACATTTTTGACCCATTGCATTTAAGAGTGTCCCTCCAAGATTGAACTGCACGTGTAGAAAGAAATCTACACATGGATGAAACAAGAGATTTGGTATATCTTTCAAGTACTAAAGTATGAAAGGAGTTTTTTTCCATCCCAATCCTAATCATTATGCCCTCATCTGGTTGATGGTGAGAAAATTCTACCTCTTGTTATGTCCCTCAAATAGTAACCAAATGCTAAAAGCTGACCAGCCATGTATTCACTGTCACTCTGGTTGTGAGTGCGCCCGAACTGATGAATTCTAAAGCCTGATATTCTCCATTCTAATTACTCCTCAATTTATGCGAGTATAGAGCGAAAGTGGCATATATATGCATTTAATTATCGGTTTAGATTCATTGGCAATCATATAATGAAACGACAGTATTTCAGGATGACTAAATGTAGCTCATATGATAATCTGAAACAGGAAAATCCAGGATGAAGGATTGGATCTACAGACGACTAAGAATGAAGATCATTTTGGTGCACTCGTTCACCACCTAGCATTAGTTCGCAATAAACGCTGCCTCATGGCCTATGTGTAAGTGTAATATTGTGAGATAACTTTGAGGAACTGGCTTCTTACCTTGTTTGCTGGATTGAGATAATTTTGTAATATTTGTCAATCAAATGTCGTTGTACATGAACAAACAGGTACAATCGAGCTGAAACTATAAGAAGTTTGATATGGAAGATAGTAGGATCTATGCTTCCACCTGAAATACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTTAAGAAGCATTCTGCTCGTCTAAAAGAATACATGTCGAAAATGGAGTTGGATTTGACTGTGGTAATTTCAGACGCCGCTCAATGACACTTTACAATAACACACAATGTTTTTGTAGGATAACTTTTTAGATATACGCTTCCAACTCAAACTCCTCGGACTAAAATCTTCAAGTTTATCATTGGCAGGATATGGTGCCTCCTAAGGATCCATATATCCAAGTGAGGGTACTCGATGATATCGGTGAAGGAATAGTACTGAGTGATGATAAAACAGCAAATTTTGCACTTCATTCCATACATTTTCTTAAACGTACTGATGCTGAGCAATACATCTCACGGGTGGGAATCCCCGTAAACCTTGATCATTCTTATTATTGTTTTGCTTAGATGTCTTCTGAACTCGTATTCTTTGAAGAACAGGGGTTAATGGAGGAGCTTAGAGGCTGAGTGTTACATTGAAGATGGAGCTTAGTTGGAGATGTTTCTGCAAACCTGGAAAAGGGGAAGAACCAAATGAGAAAGCGGGGAAAGAAGTGGAAGTGTGAGGTGTTACAGTCATGTTTGTCTAAGGCGTGTTGCAATGGCCGCGTGTCCGTTGCATGTCAAACTCCTTGTGTTGTATCGCTCTATTGCTTTCCTTTACCACTGTTATGATGTATAGCTTCTTTTTTGTATTTTTTAAGTGTAAGATGTTATGTCTATATTTGGTAGACTTGAAATGTTCCAAAATATACTATAGAAGTATGCGACTAGTTGCTAAATCTTTTATGCTATTTAAGTCGTTGCG TTAGGTAAAGAAAAGCGCGAAATCCCTAATTCAGGGGTTGGTTCCGCCAGTTCCAAACCCTGCAGCGCCCGAGATTTCTTCATTTTCTTCGCCGTCTTCCTCTCTGTTGTTGCTGCACGGCCTCATTCTCTTCCTATCTCCCTTCATTCGCTTAGTCTTCTCGTTCAAGTCTGCCCATATCAAATTTTATCTTTCCATCCATTCAACGAACTTCAAAATTGGGAAATTTTGGAATTGGAGCAGTTTTGAATTCGATATAATTCTAGATTTCAAATTCATTTCGAGCTGGTTTCGATATCTGTATTTGCGTCGTAATAGCGAGTATGTATGGGAGAAAAGCATGTCAGTTGGTGAAAGAGCTAGCAAGCGGCGAGAAAGGACAGCTAGCACAGTTCAATAGCGACCTGTTTGAACAGGTTATTTCAGAATGCCAGCAACATCATCTTGAGCTTCAATCCTTGTTGAGGAAAATCCAGGATGAAGGATTGGATCTACAGACGACTAAGAATGAAGATCATTTTGGTGCACTCGTTCACCACCTAGCATTAGTTCGCAATAAACGCTGCCTCATGGCCTATGTGTACAATCGAGCTGAAACTATAAGAAGTTTGATATGGAAGATAGTAGGATCTATGCTTCCACCTGAAATACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTTAAGAAGCATTCTGCTCGTCTAAAAGAATACATGTCGAAAATGGAGTTGGATTTGACTGTGGATATGGTGCCTCCTAAGGATCCATATATCCAAGTGAGGGTACTCGATGATATCGGTGAAGGAATAGTACTGAGTGATGATAAAACAGCAAATTTTGCACTTCATTCCATACATTTTCTTAAACGTACTGATGCTGAGCAATACATCTCACGGGGGTTAATGGAGGAGCTTAGAGGCTGAGTGTTACATTGAAGATGGAGCTTAGTTGGAGATGTTTCTGCAAACCTGGAAAAGGGGAAGAACCAAATGAGAAAGCGGGGAAAGAAGTGGAAGTGTGAGGTGTTACAGTCATGTTTGTCTAAGGCGTGTTGCAATGGCCGCGTGTCCGTTGCATGTCAAACTCCTTGTGTTGTATCGCTCTATTGCTTTCCTTTACCACTGTTATGATGTATAGCTTCTTTTTTGTATTTTTTAAGTGTAAGATGTTATGTCTATATTTGGTAGACTTGAAATGTTCCAAAATATACTATAGAAGTATGCGACTAGTTGCTAAATCTTTTATGCTATTTAAGTCGTTGCG ATGTATGGGAGAAAAGCATGTCAGTTGGTGAAAGAGCTAGCAAGCGGCGAGAAAGGACAGCTAGCACAGTTCAATAGCGACCTGTTTGAACAGGTTATTTCAGAATGCCAGCAACATCATCTTGAGCTTCAATCCTTGTTGAGGAAAATCCAGGATGAAGGATTGGATCTACAGACGACTAAGAATGAAGATCATTTTGGTGCACTCGTTCACCACCTAGCATTAGTTCGCAATAAACGCTGCCTCATGGCCTATGTGTACAATCGAGCTGAAACTATAAGAAGTTTGATATGGAAGATAGTAGGATCTATGCTTCCACCTGAAATACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTTAAGAAGCATTCTGCTCGTCTAAAAGAATACATGTCGAAAATGGAGTTGGATTTGACTGTGGATATGGTGCCTCCTAAGGATCCATATATCCAAGTGAGGGTACTCGATGATATCGGTGAAGGAATAGTACTGAGTGATGATAAAACAGCAAATTTTGCACTTCATTCCATACATTTTCTTAAACGTACTGATGCTGAGCAATACATCTCACGGGGGTTAATGGAGGAGCTTAGAGGCTGA
BLAST of CmoCh08G006380 vs. Swiss-Prot
Match: PSF1_DICDI (Probable DNA replication complex GINS protein PSF1 OS=Dictyostelium discoideum GN=gins1 PE=3 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 4.7e-23 Identity = 64/200 (32.00%), Postives = 113/200 (56.50%), Query Frame = 1
BLAST of CmoCh08G006380 vs. Swiss-Prot
Match: PSF1_MOUSE (DNA replication complex GINS protein PSF1 OS=Mus musculus GN=Gins1 PE=1 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.0e-22 Identity = 74/203 (36.45%), Postives = 109/203 (53.69%), Query Frame = 1
BLAST of CmoCh08G006380 vs. Swiss-Prot
Match: PSF1_BOVIN (DNA replication complex GINS protein PSF1 OS=Bos taurus GN=GINS1 PE=2 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 3.0e-22 Identity = 72/203 (35.47%), Postives = 110/203 (54.19%), Query Frame = 1
BLAST of CmoCh08G006380 vs. Swiss-Prot
Match: PSF1_HUMAN (DNA replication complex GINS protein PSF1 OS=Homo sapiens GN=GINS1 PE=1 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 3.9e-22 Identity = 71/204 (34.80%), Postives = 109/204 (53.43%), Query Frame = 1
BLAST of CmoCh08G006380 vs. Swiss-Prot
Match: PSF1_CAEEL (Probable DNA replication complex GINS protein PSF1 OS=Caenorhabditis elegans GN=psf-1 PE=3 SV=2) HSP 1 Score: 83.2 bits (204), Expect = 3.6e-15 Identity = 60/195 (30.77%), Postives = 98/195 (50.26%), Query Frame = 1
BLAST of CmoCh08G006380 vs. TrEMBL
Match: A0A0A0K8U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433190 PE=4 SV=1) HSP 1 Score: 381.3 bits (978), Expect = 7.1e-103 Identity = 187/200 (93.50%), Postives = 196/200 (98.00%), Query Frame = 1
BLAST of CmoCh08G006380 vs. TrEMBL
Match: V7BUE2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G004200g PE=4 SV=1) HSP 1 Score: 323.6 bits (828), Expect = 1.7e-85 Identity = 155/200 (77.50%), Postives = 181/200 (90.50%), Query Frame = 1
BLAST of CmoCh08G006380 vs. TrEMBL
Match: V7BW96_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G019100g PE=4 SV=1) HSP 1 Score: 322.8 bits (826), Expect = 3.0e-85 Identity = 155/200 (77.50%), Postives = 181/200 (90.50%), Query Frame = 1
BLAST of CmoCh08G006380 vs. TrEMBL
Match: A0A072VHS7_MEDTR (DNA replication complex GINS protein PSF1 OS=Medicago truncatula GN=MTR_1g052500 PE=4 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 1.3e-83 Identity = 154/200 (77.00%), Postives = 177/200 (88.50%), Query Frame = 1
BLAST of CmoCh08G006380 vs. TrEMBL
Match: G7IYB5_MEDTR (DNA replication complex GINS protein PSF1 OS=Medicago truncatula GN=MTR_3g005080 PE=4 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 1.4e-82 Identity = 152/200 (76.00%), Postives = 176/200 (88.00%), Query Frame = 1
BLAST of CmoCh08G006380 vs. TAIR10
Match: AT1G80190.1 (AT1G80190.1 partner of SLD five 1) HSP 1 Score: 275.0 bits (702), Expect = 3.6e-74 Identity = 135/202 (66.83%), Postives = 162/202 (80.20%), Query Frame = 1
BLAST of CmoCh08G006380 vs. NCBI nr
Match: gi|659122340|ref|XP_008461089.1| (PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis melo]) HSP 1 Score: 383.3 bits (983), Expect = 2.7e-103 Identity = 188/200 (94.00%), Postives = 197/200 (98.50%), Query Frame = 1
BLAST of CmoCh08G006380 vs. NCBI nr
Match: gi|449436120|ref|XP_004135842.1| (PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis sativus]) HSP 1 Score: 381.3 bits (978), Expect = 1.0e-102 Identity = 187/200 (93.50%), Postives = 196/200 (98.00%), Query Frame = 1
BLAST of CmoCh08G006380 vs. NCBI nr
Match: gi|1009113000|ref|XP_015871190.1| (PREDICTED: DNA replication complex GINS protein PSF1 isoform X1 [Ziziphus jujuba]) HSP 1 Score: 327.0 bits (837), Expect = 2.3e-86 Identity = 158/200 (79.00%), Postives = 183/200 (91.50%), Query Frame = 1
BLAST of CmoCh08G006380 vs. NCBI nr
Match: gi|1021561272|ref|XP_016171876.1| (PREDICTED: probable DNA replication complex GINS protein PSF1 [Arachis ipaensis]) HSP 1 Score: 323.9 bits (829), Expect = 1.9e-85 Identity = 161/200 (80.50%), Postives = 183/200 (91.50%), Query Frame = 1
BLAST of CmoCh08G006380 vs. NCBI nr
Match: gi|593696358|ref|XP_007148661.1| (hypothetical protein PHAVU_005G004200g [Phaseolus vulgaris]) HSP 1 Score: 323.6 bits (828), Expect = 2.5e-85 Identity = 155/200 (77.50%), Postives = 181/200 (90.50%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |