Carg18825 (gene) Silver-seed gourd

Overview
NameCarg18825
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDna replication complex gins protein psf1
LocationCucurbita_argyrosperma_scaffold_123 : 428522 .. 430988 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGGGAGAAAAGCATGTCAGTTGGTGAAAGAGCTAGCAAGCGGCGAGAAAGGACAGCTAGCACAGTTCAATGTAAGTCCACATGCTCGTTTTTTTTGATGTGTACGAACTGAGGTTGTTGGTCAGCTAGTATTGTGATTGCGTTTCTTTTTATATATTGACTTTTCCTATTTGCATCAGTAGGAGATCTTGGTTAGTTTTGACAGATTCGAAAAGAGTATAATTAATTTTTGTGTTCAAATGTTTGATGGAGTGGAAAATAAAATATTCATAGTATGGGTTTTTAATCTTGAGTTATGAATAGAAAATTAAAATTTTAGAAGTATATGAAATCCTGCAATCAAAATCTTAAACATTGAAATATTTGCACTCCTCGAGAGATGTTTAATTTTCTTTCACTTTAGCTGTTAATACCTCTACAACGGATGGAGTTTGCTTATTTTCACTAATACCGAGTTTGTTTGAAGTGATTGTTATACTTTTGGTGCAAATTGATCAAACAGCAGAGGCAATGTTGACTCATTAACTTTTTATCATGTATGCGTGCGTGTACAATTAACTACACGATTTCTATTGAGTTTTTAAATATGCTCTGTTTTGGATATACATTGTGAATGGTGATGGCTTTTGAGCACTTTCGGTAACAAGTAAACAACTTTAAAAGAAATTATGGTTTCTTATGATAGCAGTTCTCTGTCTCACAAATCACCGTGGTCAGTGTCCTAACGTCGAGCTATAGTGAAATTTCATAGTATATCTAATACTTTGCCATTTTGCTTTCTTATTGTCTCTGTGCTTCTCCAGAGCGACCTGTTTGAACAGGTTATTTCAGAATGCCAGCAACATCATCTTGAGCTTCAATCCTTGTTGAGGTTATAATATTCTACCTTTTCATTCACATAATTCATTAATGGATATGATATTTAGTTTTAAGTAGTAGCTGATCTGTTTCTGGTTTGTCCCATAGTAGTTGAACTGTTTGGTAGCAAAGTCGACGGTAATTAAACTGCTTCTAAGAGCATGCTCATTTGGTTAATAGTGGTTCAGTTATATATGACTAAGGAGAGCAGAATTGAGAAATGGTAGATGTTCACAGAATCAGGTCAAGGCTTCATTTCTTGACAATAGCACTTGGGAACTTTATCCGATGAACTGGTGGCCTTGGTTGGGAATAGAACTATAACATATGAACTTAAGGTAATTTTAACTTTTTAGTGAGTTTATAGTTTGAGAAATCTCCATCCATATCCCTAGGAAATCCACATCCAATGGTTTCAATCTGCATACCAGGAACTATCCCTTTAGTTCACTAATCACTACATTCCTGAACTTACTGTGGTACATTTTTGACCCATTGCATTTAAGAGTGTCCCTCCAAGATTGAACTGCACGTGTAGAAAGAAATCTACACATGGATGAAACAAGAGATTTGGTATATCTTTCAAGTACTAAAGTATGAAAGGAGTTTTTTTCCATCCCAATCCTAATCATTATGCCCTCATCTGGTTGATGGTGAGAAAATTCTACCTCTTGTTATGTCCCTCAAATAGTAACCAAATGCTAAAAGCTGACCAGCCATGTATTCACTGTCACTCTGGTTGTGAGTGCGCCCGAACTGATGAATTCTAAAGCCTGATATTCTCCATTCTAATTACTCCTCAATTTATGCGAGTATAGAGCGAAAGTGGCATATATATGCATTTAATTATCGGTTTAGATTCATTGGCAATCATATAATGAAACGACAGTATTTCAGGATGACTAAATGTAGCTCATATGATAATCTGAAACAGGAAAATCCAGGATGAAGGATTGGATCTACAGACGACTAAGAATGAAGATCATTTTGGTGCACTCGTTCACCACCTAGCATTAGTTCGCAATAAACGCTGCCTCATGGCCTATGTGTAAGTGTAATATTGTGAGATAACTTTGAGGAACTGGCTTCTTACCTTGTTTGCTGGATTGAGATAATTTTGTAATATTTGTCAATCAAATGTCGTTGTACATGAACAAACAGGTACAATCGAGCTGAAACTATAAGAAGTTTGATATGGAAGATAGTAGGATCTATGCTTCCACCTGAAATACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTTAAGAAGCATTCTGCTCGTCTAAAAGAATACATGTCGAAAATGGAGTTGGATTTGACTGTGGTAATTTCAGACGCCGCTCAATGACACTTTACAATAACACACAATGTTTTTGTAGGATAACTTTTTAGATATACGCTTCCAACTCAAACTCCTCGGACTAAAATCTTCAAGTTTATCATTGGCAGGATATGGTGCCTCCTAAGGATCCATATATCCAAGTGAGGGTACTCGATGATATCGGTGAAGGAATAGTACTGAGTGATGATAAAACAGCAAATTTTGCACTTCATTCCATACATTTTCTTAAACGTACTGATGCTGAGCAATACATCTCACGG

mRNA sequence

ATGTATGGGAGAAAAGCATGTCAGTTGGTGAAAGAGCTAGCAAGCGGCGAGAAAGGACAGCTAGCACAGTTCAATAGCGACCTGTTTGAACAGGTTATTTCAGAATGCCAGCAACATCATCTTGAGCTTCAATCCTTGTTGAGGAAAATCCAGGATGAAGGATTGGATCTACAGACGACTAAGAATGAAGATCATTTTGGTGCACTCGTTCACCACCTAGCATTAGTTCGCAATAAACGCTGCCTCATGGCCTATGTGTACAATCGAGCTGAAACTATAAGAAGTTTGATATGGAAGATAGTAGGATCTATGCTTCCACCTGAAATACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTTAAGAAGCATTCTGCTCGTCTAAAAGAATACATGTCGAAAATGGAGTTGGATTTGACTGTGGATATGGTGCCTCCTAAGGATCCATATATCCAAGTGAGGGTACTCGATGATATCGGTGAAGGAATAGTACTGAGTGATGATAAAACAGCAAATTTTGCACTTCATTCCATACATTTTCTTAAACGTACTGATGCTGAGCAATACATCTCACGG

Coding sequence (CDS)

ATGTATGGGAGAAAAGCATGTCAGTTGGTGAAAGAGCTAGCAAGCGGCGAGAAAGGACAGCTAGCACAGTTCAATAGCGACCTGTTTGAACAGGTTATTTCAGAATGCCAGCAACATCATCTTGAGCTTCAATCCTTGTTGAGGAAAATCCAGGATGAAGGATTGGATCTACAGACGACTAAGAATGAAGATCATTTTGGTGCACTCGTTCACCACCTAGCATTAGTTCGCAATAAACGCTGCCTCATGGCCTATGTGTACAATCGAGCTGAAACTATAAGAAGTTTGATATGGAAGATAGTAGGATCTATGCTTCCACCTGAAATACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTTAAGAAGCATTCTGCTCGTCTAAAAGAATACATGTCGAAAATGGAGTTGGATTTGACTGTGGATATGGTGCCTCCTAAGGATCCATATATCCAAGTGAGGGTACTCGATGATATCGGTGAAGGAATAGTACTGAGTGATGATAAAACAGCAAATTTTGCACTTCATTCCATACATTTTCTTAAACGTACTGATGCTGAGCAATACATCTCACGG

Protein sequence

MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTTKNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEYFKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHFLKRTDAEQYISR
Homology
[Close]
BLAST of Carg18825 vs. NCBI nr
Match: XP_022964026.1 (probable DNA replication complex GINS protein PSF1 [Cucurbita moschata] >XP_023000395.1 probable DNA replication complex GINS protein PSF1 [Cucurbita maxima])

HSP 1 Score: 382.5 bits (981), Expect = 8.5e-103
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60
           MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT
Sbjct: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60

Query: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120
           KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISR 193
           LKRTDAEQYISR
Sbjct: 181 LKRTDAEQYISR 192

[Close]
BLAST of Carg18825 vs. NCBI nr
Match: XP_023514648.1 (probable DNA replication complex GINS protein PSF1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379.8 bits (974), Expect = 5.5e-102
Identity = 191/192 (99.48%), Postives = 191/192 (99.48%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60
           MYGRKACQLVK LASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT
Sbjct: 1   MYGRKACQLVKVLASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60

Query: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120
           KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISR 193
           LKRTDAEQYISR
Sbjct: 181 LKRTDAEQYISR 192

[Close]
BLAST of Carg18825 vs. NCBI nr
Match: XP_004135842.1 (PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis sativus] >KGN45289.1 hypothetical protein Csa_7G433190 [Cucumis sativus])

HSP 1 Score: 368.2 bits (944), Expect = 1.7e-98
Identity = 180/192 (93.75%), Postives = 189/192 (98.44%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60
           MYGRKACQLVKELASGEKGQL  FNSDLFEQVISECQQHHLELQSL+RK+Q+EGLDLQTT
Sbjct: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60

Query: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120
           KNEDHFGAL+HHLALVRNKRCLMAYV+NRAE IRSL+WK+VGSM+PPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSK+ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISR 193
           LKRTDAEQYISR
Sbjct: 181 LKRTDAEQYISR 192

[Close]
BLAST of Carg18825 vs. NCBI nr
Match: XP_008461089.1 (PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis melo] >XP_008461091.1 PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis melo] >XP_008461092.1 PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis melo] >XP_008461093.1 PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis melo])

HSP 1 Score: 367.9 bits (943), Expect = 2.2e-98
Identity = 180/192 (93.75%), Postives = 189/192 (98.44%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60
           MYGRKACQLV ELASGEKGQL  FNSDLFEQVISECQQHHLELQSL+RK+Q+EGLDLQTT
Sbjct: 1   MYGRKACQLVTELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60

Query: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120
           KNEDHFGAL+HHLALVRNKRCLMAYV+NRAETIRSLIWK++GSM+PPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAETIRSLIWKLLGSMIPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSK+ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISR 193
           LKRTDAEQYISR
Sbjct: 181 LKRTDAEQYISR 192

[Close]
BLAST of Carg18825 vs. NCBI nr
Match: XP_022139358.1 (DNA replication complex GINS protein PSF1-like [Momordica charantia])

HSP 1 Score: 352.4 bits (903), Expect = 9.4e-94
Identity = 174/192 (90.62%), Postives = 186/192 (96.88%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60
           MYGRKACQLVKELA+GEKGQL  FNSDLF+QVISEC+QHHLELQSL+RKIQ+EGLDLQTT
Sbjct: 1   MYGRKACQLVKELANGEKGQLTHFNSDLFDQVISECEQHHLELQSLMRKIQEEGLDLQTT 60

Query: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120
           KNEDHFGAL+HHL+LVRNKRCLMAYVYNRAE IRSLIWK VGSMLPPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALIHHLSLVRNKRCLMAYVYNRAEIIRSLIWK-VGSMLPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLK YMS++EL+LTVDMVPPKDPYIQVRVLDDIGEGI+LSDDKTANFA HSIHF
Sbjct: 121 FKKHSARLKVYMSRLELELTVDMVPPKDPYIQVRVLDDIGEGIILSDDKTANFARHSIHF 180

Query: 181 LKRTDAEQYISR 193
           LKRTDAEQ+ISR
Sbjct: 181 LKRTDAEQFISR 191

[Close]
BLAST of Carg18825 vs. TAIR10
Match: AT1G80190.1 (partner of SLD five 1)

HSP 1 Score: 264.2 bits (674), Expect = 6.1e-71
Identity = 129/194 (66.49%), Postives = 156/194 (80.41%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60
           MYGRK  QL+K+ A+GEKGQL  FNS LF++ I EC Q+H  +QSL+RK+Q EGLD+Q  
Sbjct: 1   MYGRKGYQLIKDFATGEKGQLKPFNSKLFDETIEECDQNHHLIQSLIRKMQQEGLDVQNN 60

Query: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSM--LPPEIQEKLSNSEE 120
           +N DH+GAL+HHLAL+RNKRCLMAYVYNRAE +R L W++   +  LP EIQEKL+  E+
Sbjct: 61  RNADHYGALIHHLALIRNKRCLMAYVYNRAEIVRDLAWRVGLELLDLPSEIQEKLTTLEK 120

Query: 121 EYFKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSI 180
           EYFK HS  LK YM K+ ++L VDMVPPKDPYI+VR+LDDI EGIVLS DKT NFA HS+
Sbjct: 121 EYFKNHSVALKSYMGKVGIELNVDMVPPKDPYIKVRILDDIDEGIVLS-DKTTNFARHSM 180

Query: 181 HFLKRTDAEQYISR 193
           HFLKRTDAE YI+R
Sbjct: 181 HFLKRTDAEPYIAR 193

[Close]
BLAST of Carg18825 vs. Swiss-Prot
Match: sp|Q54HR6|PSF1_DICDI (Probable DNA replication complex GINS protein PSF1 OS=Dictyostelium discoideum OX=44689 GN=gins1 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-21
Identity = 62/187 (33.16%), Postives = 108/187 (57.75%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60
           M+ + A +L+KEL   +   +  +N    +  I E    + +L   + + +++       
Sbjct: 1   MFTKTAIELIKELRGTD--SIPHYNDTSIKATIDEMIALYEDLIKTITEHKEQ------- 60

Query: 61  KNEDHF--GALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEE 120
           K E  +   A+  H ++ R+KRC++AY+  R   I+   W    S+LP +++E+LS +E 
Sbjct: 61  KKEPFYLQHAITFHNSINRDKRCILAYLNERLNRIKEYRWSSGQSLLPDQLKERLSQNEI 120

Query: 121 EYFKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSI 180
           ++F ++   L EY SK+ LDLT+D  PPK+ YI+VRV+ ++GE +VL+   T N  L++ 
Sbjct: 121 QFFSEYDKILTEYNSKVGLDLTIDPQPPKELYIEVRVIKELGE-VVLNSGCTVNLNLNTT 177

Query: 181 HFLKRTD 186
           HFLKR+D
Sbjct: 181 HFLKRSD 177

[Close]
BLAST of Carg18825 vs. Swiss-Prot
Match: sp|Q9CZ15|PSF1_MOUSE (DNA replication complex GINS protein PSF1 OS=Mus musculus OX=10090 GN=Gins1 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.6e-21
Identity = 72/195 (36.92%), Postives = 103/195 (52.82%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGL-DLQT 60
           M+  KA +LV+EL    +GQL  FN D   QV+ E +  + + QS + + +  G  DL  
Sbjct: 1   MFCEKAMELVRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSAGRGDLIP 60

Query: 61  TKNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEE 120
           T           H AL+RN+RC +AY+Y+R   IR+L W+  GS+LP  ++  +S  E E
Sbjct: 61  T-------VKFRHCALLRNRRCTIAYLYDRLLRIRALRWE-YGSVLPNSLRFHMSAEETE 120

Query: 121 YFKKHSARLKEYMSKM----ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFAL 180
           +F  +   L  YM  +     LD+T D+ PPK  YI+VR L D GE   + D  +     
Sbjct: 121 WFNHYKKSLATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGE-FEVDDGTSVLLKK 180

Query: 181 HSIHFLKRTDAEQYI 191
           +S HFL R   EQ I
Sbjct: 181 NSQHFLPRWKCEQLI 186

[Close]
BLAST of Carg18825 vs. Swiss-Prot
Match: sp|A4IFH4|PSF1_BOVIN (DNA replication complex GINS protein PSF1 OS=Bos taurus OX=9913 GN=GINS1 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-20
Identity = 70/195 (35.90%), Postives = 104/195 (53.33%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGL-DLQT 60
           M+  KA +LV+EL    +G+L  FN D   QV+ E +  + + QS + + +  G  DL  
Sbjct: 1   MFCEKAMELVRELHRAAEGRLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSSGRGDLIP 60

Query: 61  TKNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEE 120
           T           H +L+RN+RC +AY+Y+R   IR+L W+  GS+LP  ++  +S  E +
Sbjct: 61  T-------IKFRHCSLLRNQRCTVAYLYDRLLRIRALRWE-YGSVLPSALRFHMSAEEMD 120

Query: 121 YFKKHSARLKEYMSKM----ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFAL 180
           +F ++   L  YM  +     LD+T DM PPK  YI+VR L D GE   + D  +     
Sbjct: 121 WFNRYKKSLATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGE-FEVEDGTSVLLKK 180

Query: 181 HSIHFLKRTDAEQYI 191
           +S HFL R   EQ I
Sbjct: 181 NSQHFLPRWKCEQLI 186

[Close]
BLAST of Carg18825 vs. Swiss-Prot
Match: sp|Q14691|PSF1_HUMAN (DNA replication complex GINS protein PSF1 OS=Homo sapiens OX=9606 GN=GINS1 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-20
Identity = 70/195 (35.90%), Postives = 103/195 (52.82%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEG-LDLQT 60
           M+  KA +L++EL    +GQL  FN D   QV+ E +  + + QS + + +  G  DL  
Sbjct: 1   MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIP 60

Query: 61  TKNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEE 120
           T           H +L+RN+RC +AY+Y+R   IR+L W+  GS+LP  ++  ++  E E
Sbjct: 61  T-------IKFRHCSLLRNRRCTVAYLYDRLLRIRALRWE-YGSVLPNALRFHMAAEEME 120

Query: 121 YFKKHSARLKEYMSKM----ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFAL 180
           +F  +   L  YM  +     LD+T DM PPK  YI+VR L D GE   + D  +     
Sbjct: 121 WFNNYKRSLATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGE-FEVDDGTSVLLKK 180

Query: 181 HSIHFLKRTDAEQYI 191
           +S HFL R   EQ I
Sbjct: 181 NSQHFLPRWKCEQLI 186

[Close]
BLAST of Carg18825 vs. Swiss-Prot
Match: sp|Q22019|PSF1_CAEEL (Probable DNA replication complex GINS protein PSF1 OS=Caenorhabditis elegans OX=6239 GN=psf-1 PE=3 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 58/189 (30.69%), Postives = 93/189 (49.21%), Query Frame = 0 

Query: 5   KACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTTKNED 64
           KA QLV E+       L  +N++L  Q   +  +   +  +++ KI+  GL   +T  + 
Sbjct: 14  KALQLVLEM-KRNPDVLPPYNTELVRQCYQKIDELFQKNAAVVEKIR-AGLPHDSTLLQP 73

Query: 65  HFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEYFKKH 124
              A+ H       +RC+MAYV  R   IRS  WK  G  LP  ++  L ++E ++F ++
Sbjct: 74  RLAAMCH------IRRCMMAYVNERKNRIRSFRWK-YGGALPASVRNALCDAEIQFFNEY 133

Query: 125 SARLKEYMSKM---ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHFL 184
           S+ L  + S +    ++L +   PPK  ++QVR L+D GE    SD      +  S+H L
Sbjct: 134 SSTLARFQSNLGEGGVNLLLHSAPPKSLFVQVRALEDYGE-FETSDGTQVQLSKDSLHSL 192

Query: 185 KRTDAEQYI 191
            R D E  I
Sbjct: 194 PRQDCEMLI 192

[Close]
BLAST of Carg18825 vs. TrEMBL
Match: tr|A0A0A0K8U8|A0A0A0K8U8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433190 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 1.1e-98
Identity = 180/192 (93.75%), Postives = 189/192 (98.44%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60
           MYGRKACQLVKELASGEKGQL  FNSDLFEQVISECQQHHLELQSL+RK+Q+EGLDLQTT
Sbjct: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60

Query: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120
           KNEDHFGAL+HHLALVRNKRCLMAYV+NRAE IRSL+WK+VGSM+PPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSK+ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISR 193
           LKRTDAEQYISR
Sbjct: 181 LKRTDAEQYISR 192

[Close]
BLAST of Carg18825 vs. TrEMBL
Match: tr|A0A1S3CDY2|A0A1S3CDY2_CUCME (probable DNA replication complex GINS protein PSF1 OS=Cucumis melo OX=3656 GN=LOC103499784 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 1.4e-98
Identity = 180/192 (93.75%), Postives = 189/192 (98.44%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60
           MYGRKACQLV ELASGEKGQL  FNSDLFEQVISECQQHHLELQSL+RK+Q+EGLDLQTT
Sbjct: 1   MYGRKACQLVTELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60

Query: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120
           KNEDHFGAL+HHLALVRNKRCLMAYV+NRAETIRSLIWK++GSM+PPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAETIRSLIWKLLGSMIPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSK+ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISR 193
           LKRTDAEQYISR
Sbjct: 181 LKRTDAEQYISR 192

[Close]
BLAST of Carg18825 vs. TrEMBL
Match: tr|A0A2P5BQH3|A0A2P5BQH3_PARAD (GINS complex, subunit Psf OS=Parasponia andersonii OX=3476 GN=PanWU01x14_219850 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 6.9e-85
Identity = 156/192 (81.25%), Postives = 180/192 (93.75%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60
           MYGRKACQLVKEL+SGEKGQL  FNSDLF+QVI+EC QH+LELQ+L+RK+Q++GLD+QTT
Sbjct: 1   MYGRKACQLVKELSSGEKGQLTPFNSDLFDQVIAECNQHYLELQALIRKMQEKGLDVQTT 60

Query: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120
           KNEDHFG+L+HHL+LVRNKRCLM+Y+YNRAE++R+LIWK VG +LP EIQEKLS+ EEEY
Sbjct: 61  KNEDHFGSLIHHLSLVRNKRCLMSYLYNRAESLRNLIWK-VGPVLPKEIQEKLSHVEEEY 120

Query: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSA LK YMSK++LDL VDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANF  HS+HF
Sbjct: 121 FKKHSASLKTYMSKIDLDLAVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFTRHSMHF 180

Query: 181 LKRTDAEQYISR 193
           LKRTDAEQ+ISR
Sbjct: 181 LKRTDAEQFISR 191

[Close]
BLAST of Carg18825 vs. TrEMBL
Match: tr|A0A2P5EV14|A0A2P5EV14_9ROSA (GINS complex, subunit Psf OS=Trema orientalis OX=63057 GN=TorRG33x02_147330 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 5.0e-83
Identity = 153/192 (79.69%), Postives = 178/192 (92.71%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60
           MYGRKACQLVKEL+SGEKGQL  FNSDLF+QVI+EC QH+LELQ+L+RK+Q++GLD+QT+
Sbjct: 1   MYGRKACQLVKELSSGEKGQLTPFNSDLFDQVIAECSQHYLELQALIRKMQEKGLDVQTS 60

Query: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120
           KNEDHFG+L+HHL+LVRNKRCLM+Y+Y+RAE +R+L WK VG +LP EIQEKLS+ EEEY
Sbjct: 61  KNEDHFGSLIHHLSLVRNKRCLMSYLYSRAEILRNLTWK-VGPVLPKEIQEKLSHFEEEY 120

Query: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSA LK YMSK++LDL VDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANF  HS+HF
Sbjct: 121 FKKHSASLKTYMSKIDLDLAVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFTRHSMHF 180

Query: 181 LKRTDAEQYISR 193
           LKRTDAEQ+ISR
Sbjct: 181 LKRTDAEQFISR 191

[Close]
BLAST of Carg18825 vs. TrEMBL
Match: tr|V7BUE2|V7BUE2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G004200g PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 5.5e-82
Identity = 149/192 (77.60%), Postives = 175/192 (91.15%), Query Frame = 0 

Query: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60
           MYGR ACQLVKE ASG+KGQL  FNSDLF+QV++EC QHHLELQSL+RKIQ+EGLD+QT 
Sbjct: 1   MYGRTACQLVKEFASGDKGQLVSFNSDLFQQVVAECSQHHLELQSLIRKIQEEGLDIQTA 60

Query: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120
           +N DH+GAL+HHLALVRNKRCLMAYVYNRAE IR+L+WKI G +LP EI+EKLS++EEE+
Sbjct: 61  RNADHYGALIHHLALVRNKRCLMAYVYNRAEIIRNLLWKI-GHVLPQEIEEKLSHAEEEH 120

Query: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           F+KHS  LK YMSK+ +DLTVDMVPPKDPYI+VRVLDDIG+GI+LSDDKTANFA HS+H 
Sbjct: 121 FRKHSTALKSYMSKVMVDLTVDMVPPKDPYIKVRVLDDIGDGIMLSDDKTANFACHSMHL 180

Query: 181 LKRTDAEQYISR 193
           LKRTDAEQ++SR
Sbjct: 181 LKRTDAEQFVSR 191

The following BLAST results are available for this feature:
BLAST of Carg18825 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022964026.18.5e-103100.00probable DNA replication complex GINS protein PSF1 [Cucurbita moschata] >XP_0230... [more]
XP_023514648.15.5e-10299.48probable DNA replication complex GINS protein PSF1 [Cucurbita pepo subsp. pepo][more]
XP_004135842.11.7e-9893.75PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis sativus] ... [more]
XP_008461089.12.2e-9893.75PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis melo] >XP... [more]
XP_022139358.19.4e-9490.63DNA replication complex GINS protein PSF1-like [Momordica charantia][more]
BLAST of Carg18825 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G80190.16.1e-7166.49partner of SLD five 1[more]
BLAST of Carg18825 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q54HR6|PSF1_DICDI1.9e-2133.16Probable DNA replication complex GINS protein PSF1 OS=Dictyostelium discoideum O... [more]
sp|Q9CZ15|PSF1_MOUSE5.6e-2136.92DNA replication complex GINS protein PSF1 OS=Mus musculus OX=10090 GN=Gins1 PE=1... [more]
sp|A4IFH4|PSF1_BOVIN2.1e-2035.90DNA replication complex GINS protein PSF1 OS=Bos taurus OX=9913 GN=GINS1 PE=2 SV... [more]
sp|Q14691|PSF1_HUMAN2.8e-2035.90DNA replication complex GINS protein PSF1 OS=Homo sapiens OX=9606 GN=GINS1 PE=1 ... [more]
sp|Q22019|PSF1_CAEEL1.1e-1330.69Probable DNA replication complex GINS protein PSF1 OS=Caenorhabditis elegans OX=... [more]
BLAST of Carg18825 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K8U8|A0A0A0K8U8_CUCSA1.1e-9893.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433190 PE=4 SV=1[more]
tr|A0A1S3CDY2|A0A1S3CDY2_CUCME1.4e-9893.75probable DNA replication complex GINS protein PSF1 OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A2P5BQH3|A0A2P5BQH3_PARAD6.9e-8581.25GINS complex, subunit Psf OS=Parasponia andersonii OX=3476 GN=PanWU01x14_219850 ... [more]
tr|A0A2P5EV14|A0A2P5EV14_9ROSA5.0e-8379.69GINS complex, subunit Psf OS=Trema orientalis OX=63057 GN=TorRG33x02_147330 PE=4... [more]
tr|V7BUE2|V7BUE2_PHAVU5.5e-8277.60Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G004200g PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000811GINS complex
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: INTERPRO
TermDefinition
IPR036224GINS_bundle-like_dom_sf
IPR005339GINS_Psf1
IPR021151GINS_A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0000811 GINS complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18825-RACarg18825-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021151GINS subunit, domain APFAMPF05916Sld5coord: 45..117
e-value: 5.0E-7
score: 30.1
NoneNo IPR availableGENE3DG3DSA:1.20.58.1030coord: 1..135
e-value: 1.1E-38
score: 134.3
IPR005339GINS complex, subunit Psf1PANTHERPTHR12914PARTNER OF SLD5coord: 1..191
IPR005339GINS complex, subunit Psf1CDDcd11710GINS_A_psf1coord: 3..137
e-value: 3.92984E-46
score: 149.328
IPR036224GINS, helical bundle-like domain superfamilySUPERFAMILYSSF158573GINS helical bundle-likecoord: 1..147

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18825Cla015381Watermelon (97103) v1carwmB0744
Carg18825Csa7G433190Cucumber (Chinese Long) v2carcuB0762
Carg18825MELO3C023404Melon (DHL92) v3.5.1carmeB0740
Carg18825ClCG09G002750Watermelon (Charleston Gray)carwcgB0724
Carg18825CSPI07G20770Wild cucumber (PI 183967)carcpiB0779
Carg18825Cucsa.105290Cucumber (Gy14) v1carcgyB0837
Carg18825CmaCh08G006730Cucurbita maxima (Rimu)carcmaB1046
Carg18825CmoCh08G006380Cucurbita moschata (Rifu)carcmoB1018
Carg18825Lsi02G027260Bottle gourd (USVL1VR-Ls)carlsiB683
Carg18825Cp4.1LG17g05660Cucurbita pepo (Zucchini)carcpeB1051
Carg18825CsGy7G019010Cucumber (Gy14) v2carcgybB0741
Carg18825MELO3C023404.2Melon (DHL92) v3.6.1carmedB0753
Carg18825CsaV3_7G032580Cucumber (Chinese Long) v3carcucB0782
Carg18825Cla97C09G164900Watermelon (97103) v2carwmbB0784
Carg18825Bhi09G000037Wax gourdcarwgoB0880
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg18825Silver-seed gourdcarcarB143
Carg18825Silver-seed gourdcarcarB234
Carg18825Silver-seed gourdcarcarB596
Carg18825Silver-seed gourdcarcarB597
Carg18825Cucurbita maxima (Rimu)carcmaB1044
Carg18825Cucurbita maxima (Rimu)carcmaB1045
Carg18825Cucurbita moschata (Rifu)carcmoB1014
Carg18825Cucurbita moschata (Rifu)carcmoB1016
Carg18825Cucurbita moschata (Rifu)carcmoB1017
Carg18825Cucurbita pepo (Zucchini)carcpeB1049
Carg18825Cucurbita pepo (Zucchini)carcpeB1050
Carg18825Cucurbita pepo (Zucchini)carcpeB1053
Carg18825Bottle gourd (USVL1VR-Ls)carlsiB685
Carg18825Watermelon (Charleston Gray)carwcgB0725
Carg18825Watermelon (97103) v1carwmB0746
Carg18825Watermelon (97103) v2carwmbB0781