CmoCh08G006090 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G006090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pentatricopeptide repeat-containing protein
Location	Cmo_Chr08 : 3701474 .. 3703872 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAACTTTGTGTCCTGGTGGACGATGATCAGTGGCTATGCAAGGATAGGCAATTTAGAAGAAGCACGCCATCTGTTTGAGAATATGCCAATGAGGAATGTGGTTTCTTGGAACGCAATGATAGCTGGATATGCACAGAATGAGAATGTCGCTAGGTCTGAGAAGAGCTCCCATCCGTCTTGAGAATCGAGAAGAGCTTTCATTTGAATCCTCCAATTCTCGTAGTTCATCTTCATTAATCGCGGTAGTGGCATTTGTCCCATCATATTCGCCATCGTCTCTGATACCAATTTGTTGAAATTAAAAGCTCGCTCTGATACCAATTTATGAGAATAACACTCACGAAATTGTGAAGGAGATGTCGAGAGGGGAGAGACAAGGAGACAAGGAATTCTGAAAAACCCTTTCTATTATACCGTACTTAAATGAGATACATGTTGGCAAAACGTGGATGCATATTAGAGGTCAAGAGATGTGACCTAATGGAGTATAATAATTTTGGGGTTGGCTATGTATGGCTATGCAGATGAAGCATTCAATTTCTTTGATGAAATGATTGAAGAGGATGGTTTAAAGCCAAATGATATTTCCTTCATGCTGGATTGGTTGATAAGGGGCTGAAGTATTTTGACATGATGGCTGAAGTTTATGGTTTACTCCTAAGGTTGAGCACTATGGGTGTGTGGTCGATCTGCTTAGTCGTGTCGGGCGTCTTGATCAAGCCGAGTCTTGGATTAACTCTATGCCTATGCAGCCTAATGTAATAGTTTGGGGTGCACTACTTGATAGTTGTCGGATATACAAAGATGCAGAACGAGAAGAAAGTGTTGTCGCATGATGTTGAATTGCAGAAAATATATACTAATGAGCAAGTTGCAGACATATTTACTAAGACACCTGCTAAAGTGAAGTTTGAAGTTTTTCGTAAGGCTCTTGGAGTTATTAAGAAATAAGCTTGCACTAACGGAGACTTTTAGAATTTAGTGCAATTTATTGCTGGTTTGAATTAATCAAGACATTCGTAATCATTTAATATTTGGATAATATCTTAGTTATAGAATATATTCGAAATATTTTAATATTTTTATTTGATTAGCAGTATATTTTATTTTATTTTTAAGATTTTGTTAGTTTATATTTTCTTTATTTGTAAGTAGTTAGTATCTTGTATCCTAATTTATACGTTGTGAATATCAATGAATATTAAACCTTCGATCCCAATTCTATTTCTCATAACTATGTATTGTTTACTTGAGTAATAATATTTTCAGATCTCTTCGCACTTTCTTTTTTGAGTGGTAGATATTGTGTCAGATTAATCTAGCCATATGGAACTCTGCCCAATTAAGAGGGGATGATGCAGGCTTGCAGGTATATCTAGGGGCAGTTGGAGAAGGGGATGATGGTGCATACGACAAGACAAGTGAAGTAGCACTCTTGAAAAGAAGTGGGTTTTGTCGTTGTGATTAGTGAGTTTAGTGTCACGGTTATGTTTGTCTAAGACGTGTTGCTTATGGTCGTATGCCCATTTCAGGTTGAAACTCTTGTCTTGTATTATTTTATCGCATTCCTTTACTACTTTCATGATGTATAATTTCTTTCTTACTTTTTCTAAGTGTGACTTTTCGGCAGAATCATGTCATGCTTGGTAGACATAAAATGTTTCAGAATATACTATAGGGGAGTGAAACTAGTTGTCAACTCCTCCTCTGATTATTTTGTATTATGATTATTTGTCGAAATCATGTTTAAGTCTGCCAAACCTGATTCACCTCACAATCTACTATAGGGAGATGACTGGTTGCCAGATTCTCGAGAAAAGTTATATGTTATTTTAAGTAGTTGTGTTGTCTTTTACCCCGCTTTCTAAAAATCTTTTTCTTAAATAAGGGCTAGAGGTTTGAGCATATGCTGCATGGTCGTGAGCGACCCAATCCTAAGTTGCTTCACTCAACATCCCTTTGTTTGTTTGTTTAGAGAGGAATTTTGGCAGTCCATTGGGTCGACCCGAACCGACATATCGGGCCCAAGCCCACGAATCGTTTCGCTCTAGTAAGGTACTTACCGGTAGTTCTCGTTCCGGTAATGTGGATAACTCAATTTTAAAATTAGTTTAATTGAACAGTGGACCCCACTTGAGTACAGACTTATTCAAGATGCTCACGTGGCGGTTTCTAATTGGTTAGCTTTTCACATCTCATTTTCTCTACCTTTCCCAGTGTGTCACATTTACCAAATTGCCCTTTTCCCAACAATTCCTTATTAAGAAATCGTTTTCCAGCCTCGGTCCTTTCTCAAAATTTCCGTAGACTGTCTATCTATCACCTTGTCTTTAATTTTAGGGTTCCGGCCGAAGCTACACCCTAGATTTCAACCGCAATTGTAGTGCTTAA

mRNA sequence

ATGGAGAAAAACTTTGTGTCCTGGTGGACGATGATCAGTGGCTATGCAAGGATAGGCAATTTAGAAGAAGCACGCCATCTGTTTGAGAATATGCCAATGAGGAATGTGGTTGAGCACTATGGGTGTGTGGTCGATCTGCTTAGTCGTGTCGGGCGTCTTGATCAAGCCGAGTCTTGGATTAACTCTATGCCTATGCAGCCTAATTGGACCCCACTTGAGTACAGACTTATTCAAGATGCTCACGTGGCGGGTTCCGGCCGAAGCTACACCCTAGATTTCAACCGCAATTGTAGTGCTTAA

Coding sequence (CDS)

ATGGAGAAAAACTTTGTGTCCTGGTGGACGATGATCAGTGGCTATGCAAGGATAGGCAATTTAGAAGAAGCACGCCATCTGTTTGAGAATATGCCAATGAGGAATGTGGTTGAGCACTATGGGTGTGTGGTCGATCTGCTTAGTCGTGTCGGGCGTCTTGATCAAGCCGAGTCTTGGATTAACTCTATGCCTATGCAGCCTAATTGGACCCCACTTGAGTACAGACTTATTCAAGATGCTCACGTGGCGGGTTCCGGCCGAAGCTACACCCTAGATTTCAACCGCAATTGTAGTGCTTAA

Homology

[Close]

BLAST of CmoCh08G006090 vs. Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.5e-10
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 1


Query: 2   EKNFVSWWTMISGYARIGNLEEARHLFENMPMRNVVEHYGCVVDLLSRVGRLDQAESWIN 61
           E+N VSW TMI GYA+ G +++A  LF+ MP RN+V     V  L+ R GR+D+A +   
Sbjct: 137 ERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQR-GRIDEAMNLFE 196

Query: 62  SMPMQP--NWTPLEYRLIQDAHVAGSGRSYTLDFNRN 97
            MP +   +WT +   L ++  V  + R +     RN
Sbjct: 197 RMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERN 232

[Close]

BLAST of CmoCh08G006090 vs. Swiss-Prot
Match: PP243_ARATH (Pentatricopeptide repeat-containing protein At3g18970 OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.5e-10
Identity = 28/72 (38.89%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 1   MEKNFVSWWTMISGYARIGNLEEARHLFENMPMR----NVVEHYGCVVDLLSRVGRLDQA 60
           ++ N +++ +++S Y  IG +EE   LF++M  R     V+EHYGC+VDLL + GR+ +A
Sbjct: 319 IKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEA 378

Query: 61  ESWINSMPMQPN 69
             +I +MP++P+
Sbjct: 379 YQFILAMPIKPD 390

[Close]

BLAST of CmoCh08G006090 vs. Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 42/129 (32.56%), Postives = 55/129 (42.64%), Query Frame = 1


Query: 3   KNFVSWWTMISGYARIGNLEEARHLFENM------PMRNV-------------------- 62
           +N  SW +MISGYAR G  EEA  LFE M      P  +V                    
Sbjct: 683 RNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFK 742

Query: 63  --------------VEHYGCVVDLLSRVGRLDQAESWINSMPMQPNWTPLEYRLIQDAHV 92
                         +EH+ C+ D+L R G LD+ E +I  MPM+PN   L +R +  A  
Sbjct: 743 HFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPN--VLIWRTVLGACC 802

[Close]

BLAST of CmoCh08G006090 vs. Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 25/72 (34.72%), Postives = 47/72 (65.28%), Query Frame = 1


Query: 1   MEKNFVSWWTMISGYARIGNLEEARHLFENMP----MRNVVEHYGCVVDLLSRVGRLDQA 60
           ++ N +++  +++  +  G +EE + +F +M     ++  +EHYGC+VDLL R G LD+A
Sbjct: 344 IKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEA 403

Query: 61  ESWINSMPMQPN 69
           + +I  MP++PN
Sbjct: 404 KRFIQEMPLKPN 415

[Close]

BLAST of CmoCh08G006090 vs. Swiss-Prot
Match: PP336_ARATH (Pentatricopeptide repeat-containing protein At4g22760 OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-08
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1


Query: 4   NFVSWWTMISGYARIGNLEEARHLFENMPMRNV---VEHYGCVVDLLSRVGRLDQAESWI 63
           N V++  ++S Y+  G ++E    F +M   N+    +HYG +VD+L R GRL++A   I
Sbjct: 431 NVVTFTGLLSAYSHSGLVQEGYKCFNSMKDHNLEPSADHYGIMVDMLGRAGRLEEAYELI 490

Query: 64  NSMPMQPN 69
            SMPMQPN
Sbjct: 491 KSMPMQPN 498

[Close]

BLAST of CmoCh08G006090 vs. TrEMBL
Match: A0A0A0LE51_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895070 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.0e-11
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1


Query: 1   MEKNFVSWWTMISGYARIGNLEEARHLFENMP----MRNVVEHYGCVVDLLSRVGRLDQA 60
           +E N +S+  +++     G +++    F+ MP    +   +EHYGCVVDLLSR GRLDQA
Sbjct: 388 LEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQA 447

Query: 61  ESWINSMPMQPN 69
           ES INSMPMQPN
Sbjct: 448 ESLINSMPMQPN 459

[Close]

BLAST of CmoCh08G006090 vs. TrEMBL
Match: J3LQB1_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 1


Query: 1   MEKNFVSWWTMISGYARIGNLEEARHLFENMPMRNV-----------------------V 60
           +E N VSW TMIS  AR G L+EA  LF+ M   ++                       +
Sbjct: 264 VEMNVVSWNTMISASARAGELDEALALFQEMQAASMRPDDATFVAVLGACAQLGALDTGI 323

Query: 61  EHYGCVVDLLSRVGRLDQAESWINSMPMQPN 69
           E YGCVVD+L+R GRLD+A   + +MPMQP+
Sbjct: 324 EPYGCVVDMLARSGRLDEAVELVAAMPMQPD 354

[Close]

BLAST of CmoCh08G006090 vs. TrEMBL
Match: M4CMD4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08
Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 1


Query: 2   EKNFVSWWTMISGYARIGNLEEARHLFENMPMRNVVEHYGCVVDLLSRVGRLDQAESWIN 61
           E+N VSW TMI GYA+ G +++A  LF+ MP RNVV     +  L+ R GR+D+A     
Sbjct: 137 ERNIVSWNTMIDGYAQSGRIDKALELFDEMPERNVVSWNTMIKGLVMR-GRIDEAMGLFE 196

Query: 62  SMPMQ--PNWTPLEYRLIQDAHVAGSGRSYTLDFNRN 97
           SMP++   +WT +   L ++  V  + R +     RN
Sbjct: 197 SMPVRDVKSWTAVVDGLAKNGKVDEARRVFDCMPERN 232

[Close]

BLAST of CmoCh08G006090 vs. TrEMBL
Match: D7MMG1_ARALL (Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_920076 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08
Identity = 29/72 (40.28%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 1   MEKNFVSWWTMISGYARIGNLEEARHLFENMP----MRNVVEHYGCVVDLLSRVGRLDQA 60
           ++ N +++ T+++  +  G +EE + +F NM     ++  +EHYGCVVDLLSR G LD+A
Sbjct: 373 IKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEA 432

Query: 61  ESWINSMPMQPN 69
           + +I  MP++PN
Sbjct: 433 KRFIQEMPLKPN 444

[Close]

BLAST of CmoCh08G006090 vs. TrEMBL
Match: M8CB51_AEGTA (Uncharacterized protein OS=Aegilops tauschii GN=F775_06879 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-08
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1


Query: 1   MEKNFVSWWTMISGYARIGNLEEARHLFENMPMRNVVE----HYGCVVDLLSRVGRLDQA 60
           ME N V++  ++ G +  G +EE R  F++M  ++ VE    HYGC+VDL  R GRLD A
Sbjct: 186 MEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDA 245

Query: 61  ESWINSMPMQPN 69
            ++INSMP++P+
Sbjct: 246 VNFINSMPVEPH 257

[Close]

BLAST of CmoCh08G006090 vs. TAIR10
Match: AT2G35030.1 (AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.7e-11
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 1


Query: 2   EKNFVSWWTMISGYARIGNLEEARHLFENMPMRNVVEHYGCVVDLLSRVGRLDQAESWIN 61
           E+N VSW TMI GYA+ G +++A  LF+ MP RN+V     V  L+ R GR+D+A +   
Sbjct: 137 ERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQR-GRIDEAMNLFE 196

Query: 62  SMPMQP--NWTPLEYRLIQDAHVAGSGRSYTLDFNRN 97
            MP +   +WT +   L ++  V  + R +     RN
Sbjct: 197 RMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERN 232

[Close]

BLAST of CmoCh08G006090 vs. TAIR10
Match: AT3G18970.1 (AT3G18970.1 mitochondrial editing factor 20)

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-11
Identity = 28/72 (38.89%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 1   MEKNFVSWWTMISGYARIGNLEEARHLFENMPMR----NVVEHYGCVVDLLSRVGRLDQA 60
           ++ N +++ +++S Y  IG +EE   LF++M  R     V+EHYGC+VDLL + GR+ +A
Sbjct: 319 IKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEA 378

Query: 61  ESWINSMPMQPN 69
             +I +MP++P+
Sbjct: 379 YQFILAMPIKPD 390

[Close]

BLAST of CmoCh08G006090 vs. TAIR10
Match: AT5G09950.1 (AT5G09950.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-10
Identity = 42/129 (32.56%), Postives = 55/129 (42.64%), Query Frame = 1


Query: 3   KNFVSWWTMISGYARIGNLEEARHLFENM------PMRNV-------------------- 62
           +N  SW +MISGYAR G  EEA  LFE M      P  +V                    
Sbjct: 683 RNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFK 742

Query: 63  --------------VEHYGCVVDLLSRVGRLDQAESWINSMPMQPNWTPLEYRLIQDAHV 92
                         +EH+ C+ D+L R G LD+ E +I  MPM+PN   L +R +  A  
Sbjct: 743 HFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPN--VLIWRTVLGACC 802

[Close]

BLAST of CmoCh08G006090 vs. TAIR10
Match: AT5G66520.1 (AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-10
Identity = 25/72 (34.72%), Postives = 47/72 (65.28%), Query Frame = 1


Query: 1   MEKNFVSWWTMISGYARIGNLEEARHLFENMP----MRNVVEHYGCVVDLLSRVGRLDQA 60
           ++ N +++  +++  +  G +EE + +F +M     ++  +EHYGC+VDLL R G LD+A
Sbjct: 344 IKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEA 403

Query: 61  ESWINSMPMQPN 69
           + +I  MP++PN
Sbjct: 404 KRFIQEMPLKPN 415

[Close]

BLAST of CmoCh08G006090 vs. TAIR10
Match: AT4G22760.1 (AT4G22760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1


Query: 4   NFVSWWTMISGYARIGNLEEARHLFENMPMRNV---VEHYGCVVDLLSRVGRLDQAESWI 63
           N V++  ++S Y+  G ++E    F +M   N+    +HYG +VD+L R GRL++A   I
Sbjct: 431 NVVTFTGLLSAYSHSGLVQEGYKCFNSMKDHNLEPSADHYGIMVDMLGRAGRLEEAYELI 490

Query: 64  NSMPMQPN 69
            SMPMQPN
Sbjct: 491 KSMPMQPN 498

[Close]

BLAST of CmoCh08G006090 vs. NCBI nr
Match: gi|778689051|ref|XP_011652887.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-10
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1


Query: 1   MEKNFVSWWTMISGYARIGNLEEARHLFENMP----MRNVVEHYGCVVDLLSRVGRLDQA 60
           +E N +S+  +++     G +++    F+ MP    +   +EHYGCVVDLLSR GRLDQA
Sbjct: 388 LEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQA 447

Query: 61  ESWINSMPMQPN 69
           ES INSMPMQPN
Sbjct: 448 ESLINSMPMQPN 459

[Close]

BLAST of CmoCh08G006090 vs. NCBI nr
Match: gi|659132216|ref|XP_008466082.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 1


Query: 1   MEKNFVSWWTMISGYARIGNLEEARHLFENMP----MRNVVEHYGCVVDLLSRVGRLDQA 60
           +E N +S+  +++     G +++    F+ M     +   +EHYGCV+DLLSR GRLDQA
Sbjct: 352 LEPNDISFMGLLTACTHAGLVDKGLEYFDMMAQVYGITPKIEHYGCVIDLLSRAGRLDQA 411

Query: 61  ESWINSMPMQPN 69
           ES INSMPMQPN
Sbjct: 412 ESLINSMPMQPN 423

[Close]

BLAST of CmoCh08G006090 vs. NCBI nr
Match: gi|297739912|emb|CBI30094.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-08
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 1


Query: 3   KNFVSWWTMISGYARIGNLEEARHLFENMPMRNVVEHYGCVVDLLSRVGRLDQAESWINS 62
           KN VSW TMI GYA+ G ++ A +LFE MP RNVV  +  V+ +L++ GR+++A    + 
Sbjct: 159 KNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVS-WNTVMSMLAQCGRIEEARRLFDR 218

Query: 63  MPMQP--NWTPLEYRLIQDA 81
           MP +   +WT +   L+ +A
Sbjct: 219 MPERDVISWTAMIAGLLDEA 237

[Close]

BLAST of CmoCh08G006090 vs. NCBI nr
Match: gi|694424442|ref|XP_009339995.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-08
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 2   EKNFVSWWTMISGYARIGNLEEARHLFENMPMRNVVEHYGCVVDLLSRVGRLDQAESWIN 61
           EKN VSW TMI GYAR G ++ A  LF+ MP RNVV  +  V+  L++ GR+++A S   
Sbjct: 155 EKNVVSWNTMIDGYARDGQVDRALDLFKRMPERNVVS-WNTVLTALAQCGRIEEARSLFK 214

Query: 62  SMPMQP--NWTPLEYRLIQDAHVAGSGRSYTLD 93
            MP +   +WT         A VAG  R+  +D
Sbjct: 215 LMPKRDIISWT---------AMVAGFSRNGMID 237

[Close]

BLAST of CmoCh08G006090 vs. NCBI nr
Match: gi|694438292|ref|XP_009346130.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-08
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 2   EKNFVSWWTMISGYARIGNLEEARHLFENMPMRNVVEHYGCVVDLLSRVGRLDQAESWIN 61
           EKN VSW TMI GYAR G ++ A  LF+ MP RNVV  +  V+  L++ GR+++A S   
Sbjct: 155 EKNVVSWNTMIDGYARDGQVDRALDLFKRMPERNVVS-WNTVLTALAQCGRIEEARSLFK 214

Query: 62  SMPMQP--NWTPLEYRLIQDAHVAGSGRSYTLD 93
            MP +   +WT         A VAG  R+  +D
Sbjct: 215 LMPARDIISWT---------AMVAGFSRNGMID 237

The following BLAST results are available for this feature:

BLAST of CmoCh08G006090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP185_ARATH	6.5e-10	37.11	Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidop...	[more]
PP243_ARATH	8.5e-10	38.89	Pentatricopeptide repeat-containing protein At3g18970 OS=Arabidopsis thaliana GN...	[more]
PP373_ARATH	1.2e-08	32.56	Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis th...	[more]
PP449_ARATH	1.2e-08	34.72	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN...	[more]
PP336_ARATH	2.1e-08	41.18	Pentatricopeptide repeat-containing protein At4g22760 OS=Arabidopsis thaliana GN...	[more]

BLAST of CmoCh08G006090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE51_CUCSA	7.0e-11	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895070 PE=4 SV=1	[more]
J3LQB1_ORYBR	1.1e-08	40.66	Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1	[more]
M4CMD4_BRARP	2.5e-08	38.14	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
D7MMG1_ARALL	2.5e-08	40.28	Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata ...	[more]
M8CB51_AEGTA	4.3e-08	44.44	Uncharacterized protein OS=Aegilops tauschii GN=F775_06879 PE=4 SV=1	[more]

BLAST of CmoCh08G006090 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35030.1	3.7e-11	37.11	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G18970.1	4.8e-11	38.89	mitochondrial editing factor 20	[more]
AT5G09950.1	6.9e-10	32.56	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G66520.1	6.9e-10	34.72	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G22760.1	1.2e-09	41.18	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CmoCh08G006090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778689051\|ref\|XP_011652887.1\|	1.0e-10	50.00	PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis s...	[more]
gi\|659132216\|ref\|XP_008466082.1\|	1.1e-09	47.22	PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis m...	[more]
gi\|297739912\|emb\|CBI30094.3\|	2.1e-08	41.25	unnamed protein product [Vitis vinifera]	[more]
gi\|694424442\|ref\|XP_009339995.1\|	2.7e-08	41.94	PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-...	[more]
gi\|694438292\|ref\|XP_009346130.1\|	2.7e-08	41.94	PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G006090.1	CmoCh08G006090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 7..35 score: 2.1E-6coord: 39..64 score: 0
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 10..36 score: 5.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 4..38 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..68 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G006090	Carg23144	Silver-seed gourd	carcmoB0199

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G006090	Melon (DHL92) v3.6.1	cmomedB911
CmoCh08G006090	Silver-seed gourd	carcmoB1379
CmoCh08G006090	Cucumber (Chinese Long) v3	cmocucB1066
CmoCh08G006090	Watermelon (97103) v2	cmowmbB917
CmoCh08G006090	Wax gourd	cmowgoB1100
CmoCh08G006090	Wax gourd	cmowgoB1125
CmoCh08G006090	Cucurbita moschata (Rifu)	cmocmoB234
CmoCh08G006090	Cucurbita maxima (Rimu)	cmacmoB913
CmoCh08G006090	Wild cucumber (PI 183967)	cmocpiB913
CmoCh08G006090	Cucumber (Chinese Long) v2	cmocuB900
CmoCh08G006090	Melon (DHL92) v3.5.1	cmomeB808
CmoCh08G006090	Watermelon (Charleston Gray)	cmowcgB786
CmoCh08G006090	Watermelon (Charleston Gray)	cmowcgB805
CmoCh08G006090	Watermelon (97103) v1	cmowmB844
CmoCh08G006090	Cucurbita pepo (Zucchini)	cmocpeB839
CmoCh08G006090	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G006090	Bottle gourd (USVL1VR-Ls)	cmolsiB809
CmoCh08G006090	Cucumber (Gy14) v2	cgybcmoB955