CmoCh08G006090.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAAAAACTTTGTGTCCTGGTGGACGATGATCAGTGGCTATGCAAGGATAGGCAATTTAGAAGAAGCACGCCATCTGTTTGAGAATATGCCAATGAGGAATGTGGTTTCTTGGAACGCAATGATAGCTGGATATGCACAGAATGAGAATGTCGCTAGGTCTGAGAAGAGCTCCCATCCGTCTTGAGAATCGAGAAGAGCTTTCATTTGAATCCTCCAATTCTCGTAGTTCATCTTCATTAATCGCGGTAGTGGCATTTGTCCCATCATATTCGCCATCGTCTCTGATACCAATTTGTTGAAATTAAAAGCTCGCTCTGATACCAATTTATGAGAATAACACTCACGAAATTGTGAAGGAGATGTCGAGAGGGGAGAGACAAGGAGACAAGGAATTCTGAAAAACCCTTTCTATTATACCGTACTTAAATGAGATACATGTTGGCAAAACGTGGATGCATATTAGAGGTCAAGAGATGTGACCTAATGGAGTATAATAATTTTGGGGTTGGCTATGTATGGCTATGCAGATGAAGCATTCAATTTCTTTGATGAAATGATTGAAGAGGATGGTTTAAAGCCAAATGATATTTCCTTCATGCTGGATTGGTTGATAAGGGGCTGAAGTATTTTGACATGATGGCTGAAGTTTATGGTTTACTCCTAAGGTTGAGCACTATGGGTGTGTGGTCGATCTGCTTAGTCGTGTCGGGCGTCTTGATCAAGCCGAGTCTTGGATTAACTCTATGCCTATGCAGCCTAATGTAATAGTTTGGGGTGCACTACTTGATAGTTGTCGGATATACAAAGATGCAGAACGAGAAGAAAGTGTTGTCGCATGATGTTGAATTGCAGAAAATATATACTAATGAGCAAGTTGCAGACATATTTACTAAGACACCTGCTAAAGTGAAGTTTGAAGTTTTTCGTAAGGCTCTTGGAGTTATTAAGAAATAAGCTTGCACTAACGGAGACTTTTAGAATTTAGTGCAATTTATTGCTGGTTTGAATTAATCAAGACATTCGTAATCATTTAATATTTGGATAATATCTTAGTTATAGAATATATTCGAAATATTTTAATATTTTTATTTGATTAGCAGTATATTTTATTTTATTTTTAAGATTTTGTTAGTTTATATTTTCTTTATTTGTAAGTAGTTAGTATCTTGTATCCTAATTTATACGTTGTGAATATCAATGAATATTAAACCTTCGATCCCAATTCTATTTCTCATAACTATGTATTGTTTACTTGAGTAATAATATTTTCAGATCTCTTCGCACTTTCTTTTTTGAGTGGTAGATATTGTGTCAGATTAATCTAGCCATATGGAACTCTGCCCAATTAAGAGGGGATGATGCAGGCTTGCAGGTATATCTAGGGGCAGTTGGAGAAGGGGATGATGGTGCATACGACAAGACAAGTGAAGTAGCACTCTTGAAAAGAAGTGGGTTTTGTCGTTGTGATTAGTGAGTTTAGTGTCACGGTTATGTTTGTCTAAGACGTGTTGCTTATGGTCGTATGCCCATTTCAGGTTGAAACTCTTGTCTTGTATTATTTTATCGCATTCCTTTACTACTTTCATGATGTATAATTTCTTTCTTACTTTTTCTAAGTGTGACTTTTCGGCAGAATCATGTCATGCTTGGTAGACATAAAATGTTTCAGAATATACTATAGGGGAGTGAAACTAGTTGTCAACTCCTCCTCTGATTATTTTGTATTATGATTATTTGTCGAAATCATGTTTAAGTCTGCCAAACCTGATTCACCTCACAATCTACTATAGGGAGATGACTGGTTGCCAGATTCTCGAGAAAAGTTATATGTTATTTTAAGTAGTTGTGTTGTCTTTTACCCCGCTTTCTAAAAATCTTTTTCTTAAATAAGGGCTAGAGGTTTGAGCATATGCTGCATGGTCGTGAGCGACCCAATCCTAAGTTGCTTCACTCAACATCCCTTTGTTTGTTTGTTTAGAGAGGAATTTTGGCAGTCCATTGGGTCGACCCGAACCGACATATCGGGCCCAAGCCCACGAATCGTTTCGCTCTAGTAAGGTACTTACCGGTAGTTCTCGTTCCGGTAATGTGGATAACTCAATTTTAAAATTAGTTTAATTGAACAGTGGACCCCACTTGAGTACAGACTTATTCAAGATGCTCACGTGGCGGTTTCTAATTGGTTAGCTTTTCACATCTCATTTTCTCTACCTTTCCCAGTGTGTCACATTTACCAAATTGCCCTTTTCCCAACAATTCCTTATTAAGAAATCGTTTTCCAGCCTCGGTCCTTTCTCAAAATTTCCGTAGACTGTCTATCTATCACCTTGTCTTTAATTTTAGGGTTCCGGCCGAAGCTACACCCTAGATTTCAACCGCAATTGTAGTGCTTAA ATGGAGAAAAACTTTGTGTCCTGGTGGACGATGATCAGTGGCTATGCAAGGATAGGCAATTTAGAAGAAGCACGCCATCTGTTTGAGAATATGCCAATGAGGAATGTGGTTGAGCACTATGGGTGTGTGGTCGATCTGCTTAGTCGTGTCGGGCGTCTTGATCAAGCCGAGTCTTGGATTAACTCTATGCCTATGCAGCCTAATTGGACCCCACTTGAGTACAGACTTATTCAAGATGCTCACGTGGCGGGTTCCGGCCGAAGCTACACCCTAGATTTCAACCGCAATTGTAGTGCTTAA ATGGAGAAAAACTTTGTGTCCTGGTGGACGATGATCAGTGGCTATGCAAGGATAGGCAATTTAGAAGAAGCACGCCATCTGTTTGAGAATATGCCAATGAGGAATGTGGTTGAGCACTATGGGTGTGTGGTCGATCTGCTTAGTCGTGTCGGGCGTCTTGATCAAGCCGAGTCTTGGATTAACTCTATGCCTATGCAGCCTAATTGGACCCCACTTGAGTACAGACTTATTCAAGATGCTCACGTGGCGGGTTCCGGCCGAAGCTACACCCTAGATTTCAACCGCAATTGTAGTGCTTAA
BLAST of CmoCh08G006090.1 vs. Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 6.5e-10 Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. Swiss-Prot
Match: PP243_ARATH (Pentatricopeptide repeat-containing protein At3g18970 OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 8.5e-10 Identity = 28/72 (38.89%), Postives = 49/72 (68.06%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08 Identity = 42/129 (32.56%), Postives = 55/129 (42.64%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08 Identity = 25/72 (34.72%), Postives = 47/72 (65.28%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. Swiss-Prot
Match: PP336_ARATH (Pentatricopeptide repeat-containing protein At4g22760 OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 2.1e-08 Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. TrEMBL
Match: A0A0A0LE51_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895070 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 7.0e-11 Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. TrEMBL
Match: J3LQB1_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08 Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. TrEMBL
Match: M4CMD4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08 Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. TrEMBL
Match: D7MMG1_ARALL (Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_920076 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08 Identity = 29/72 (40.28%), Postives = 49/72 (68.06%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. TrEMBL
Match: M8CB51_AEGTA (Uncharacterized protein OS=Aegilops tauschii GN=F775_06879 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 4.3e-08 Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. TAIR10
Match: AT2G35030.1 (AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 64.7 bits (156), Expect = 3.7e-11 Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. TAIR10
Match: AT3G18970.1 (AT3G18970.1 mitochondrial editing factor 20) HSP 1 Score: 64.3 bits (155), Expect = 4.8e-11 Identity = 28/72 (38.89%), Postives = 49/72 (68.06%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. TAIR10
Match: AT5G09950.1 (AT5G09950.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 60.5 bits (145), Expect = 6.9e-10 Identity = 42/129 (32.56%), Postives = 55/129 (42.64%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. TAIR10
Match: AT5G66520.1 (AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 60.5 bits (145), Expect = 6.9e-10 Identity = 25/72 (34.72%), Postives = 47/72 (65.28%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. TAIR10
Match: AT4G22760.1 (AT4G22760.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09 Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. NCBI nr
Match: gi|778689051|ref|XP_011652887.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis sativus]) HSP 1 Score: 74.7 bits (182), Expect = 1.0e-10 Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. NCBI nr
Match: gi|659132216|ref|XP_008466082.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis melo]) HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09 Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. NCBI nr
Match: gi|297739912|emb|CBI30094.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 67.0 bits (162), Expect = 2.1e-08 Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. NCBI nr
Match: gi|694424442|ref|XP_009339995.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Pyrus x bretschneideri]) HSP 1 Score: 66.6 bits (161), Expect = 2.7e-08 Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1
BLAST of CmoCh08G006090.1 vs. NCBI nr
Match: gi|694438292|ref|XP_009346130.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Pyrus x bretschneideri]) HSP 1 Score: 66.6 bits (161), Expect = 2.7e-08 Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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