Carg23144 (gene) Silver-seed gourd

Overview
NameCarg23144
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat
LocationCucurbita_argyrosperma_scaffold_194 : 124513 .. 127003 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAATGGATTGTCGGTTCTGGTTATTCTCATCATGCAACTAAAAACAAAACTCTTCTATCAGATGTTCGTCTACATTGTCAAGAGAAGAGTAAAGGGTCCAACAAAGTGGCTGAATTGGAATCATGGCTTTCTTAACTCCAAGAGAAACTTAAGAAAACAAGTGATCAACTGAGCACATCTGAATCACACAAAGCAGGTTTGGAGGTTTTGATACTTGGAAGATCGTGGATGATTTGGAGGTTTTCATTAAGAAGTTCAAGACAAAGCAGGCTAAGGATGGAAAATTGAAGGCGGACAATTTCGATGCCTATTATGATTCAGGCTGGTCGAGAGAATTGGGGGAGCTTTATGAGAAGAGGGTTTTTTAGGAAGAGTCTGACCATGATTATGCTTCGTTTTTCAAGAAATTAGGGGTTTTGAGAATCCGAGTAGATCGAGCGCGGTTCAAAGAGGAGGTTTTTGATGGGATGATGGAGAAAAACTTGGTGTATTGGTGGACGATGATCAGTGGCTATGCAAGGATGGGCAATTTAGAAGAAGCACGTCATCTGTTTGAGAATATGCCAATGAGGAATGTGGTTTCTTGGAACGCAATGATAGCTGGATATGCACAGAATGAGAACTATGCAGATGCAATTGAGTTGTTCAGGCAAATGCAGCGTGAAGGCGACCCGGCACCCAACGATGTTACGCTTGTTAGCGTACTCTCCGCTTGTGCACGTCTTGGTGCTCTTGATATAGATGGAGGTATGCCTGTTTTTGTTGAAAATAAGAGCTCGCTTTGATACCAATTTGTTAGAATAACACTCACGAAACTGTGAAGGAGATATCGAGAGTGGAGAGACAAGGAGATAAAAGGAATTCTGAAAACCTTTTTCTATTACCATAAAAATAAATTGTCTCTTCTCCTTATAATTTTCTTCATCTTTGACTACCTCGACCATTCCCTCGACTTCCACGACCTCTGCCTTGAATATTTTGAGAGTAGAGTACTTTTTCTTCCTTTATTGATGCCTTAGTCTAAAGCGCTTGGTCAAGTATCTCCTCCTTCTTTTTCTTACATTGCTCGTGTGCCTTGAGAGAACAGGCGATCTCATCGATCGAGAACGTCGCTAGGTCTGAGAAGATCTCTCATCCGTCTTGAGAACCGAGAAGAGCTTTCATTTGAATGCTCCAATTCTCGTAGTTCATCTTCATTAATCGCGGTAGTGGCATTTGTCCCATCATATTCGCCATCAGCTCTGATACCAATTTGTTGAAAATAAAAGCTCGCTCTGATACCAATTTATGAGAATAACACTCAAGAAATTGTGAAGGAGATGTCGAGAGGGGAGAGACGAGGAGACGAGGAATTCTGAAAAACCCTTTCTATTATACCGTACTTAAATGAGATACGTGTTGGCAAAACGTGGATGCATATTAGAGGCGAAGAGATGTGACCTAATGGAGTATAATAATTTTGGGGTTGGCTATGTATGGCTATGCAGATGAAGCATTCAAGTGCTTTGATGAAATGATTGAAGATGATGGTTTAAAGCCAAATGATATTTCCTTCATGGCTTTATTAACAGCCTGCACCCATGCTGGATTGGTTGATAAGGGGCTGAAGTATTTTGACATGATGGCTGCAGTTTATGGTATTACTCCTAAGGTTGAGCACTATGGGTGTGTGGTCGATCTGCTTAGTCGTGTCGGGCGTCTTAATCAAGCCGAGTCTTGGATTAACTCTATGCCTGTGCAGCCTAATGTAATAGTTTGGGGTGCACTACTTGCTGGTTGTCGGATATACAAAGATGCAGAACGAGAAGAAAATGTTATCGCAGTATGTTGAATTGCAGAAAATATATACTAATGAGCAAGTTGCAGACATATTTACTAAGCCACTTGCTAAAGTGAAGTCTGAAGTTTTTCGTAAGGCTCTTGGAGTTATTAAGAAATAAGCTTGTACTAAAAAGGACTTTCAGAGAATTTAGTGCAATTTATTGCTGGTTTGAATTAATCAAAACATTCTTAATCACTTAATATTTGGAGAAAATCTTAGTTATAGAATATATTTGAGATATTTTAATATTTTTATTTGATTAATAGTATATTTTATTTTATTTTTAATAGTTTTTATATATATATATATATATATATATTTTTTTTTTTTTGTAAGTAGTTAGTATCTTGTATCCTAATTTATACGTTGTGAATATCAATGAATATTAAACCTTCGATCCCAATTTTATTTCTCATAATTTTGTATTGTTTACTTGAGTAATAATATTTTCAGATCTCTTCGCACTTTTTTTTTTTTGAGTGGTAGATATTGTGTCAGATTAATCTAGTCTATAACCAAATGGAACTTTGCCCAATTAAAAGAGGATGATGCAGGCTTGCAGGTATATCTAGGGGCAGTCGGAGAAGGGGATGATGGTGCATACAACAAGACAAGTGAAGTAGCACTCTTGAAAAGAAGTGGGTTTTGTCGTTGTGATCAGTGA

mRNA sequence

ATGAAGAATGGATTGTCGGTTCTGGTTATTCTCATCATGCAACTAAAAACAAAACTCTTCTATCAGATGTTCGTCTACATTGTCAAGAGAAGAGTAAAGGGTCCAACAAAGTTTGGAGGTTTTGATACTTGGAAGATCGTGGATGATTTGGAGGTTTTCATTAAGAAGTTCAAGACAAAGCAGGCTAAGGATGGAAAATTGAAGGCGGACAATTTCGATGCCTATTATGATTCAGGCTGGTCGAGAGAATTGGGGGAGCTTTATGAGAAGAGGAAATTAGGGGTTTTGAGAATCCGAGTAGATCGAGCGCGGTTCAAAGAGGAGGTTTTTGATGGGATGATGGAGAAAAACTTGGTGTATTGGTGGACGATGATCAGTGGCTATGCAAGGATGGGCAATTTAGAAGAAGCACGTCATCTGTTTGAGAATATGCCAATGAGGAATGTGGTTTCTTGGAACGCAATGATAGCTGGATATGCACAGAATGAGAACTATGCAGATGCAATTGAGTTGTTCAGGCAAATGCAGCGTGAAGGCGACCCGGCACCCAACGATGTTACGCTTGTTAGCGTACTCTCCGCTTGTGCACGTCTTGGTGCTCTTGATATAGATGGAGATGAAGCATTCAAGTGCTTTGATGAAATGATTGAAGATGATGGTTTAAAGCCAAATGATATTTCCTTCATGGCTTTATTAACAGCCTGCACCCATGCTGGATTGGTTGATAAGGGGCTGAAGTATTTTGACATGATGGCTGCAGTTTATGGTATTACTCCTAAGGTTGAGCACTATGGGTGTGTGGTCGATCTGCTTAGTCGTGTCGGGCGTCTTAATCAAGCCGAGTCTTGGATTAACTCTATGCCTGTGCAGCCTAATGTAATAGTTTGGGGTGCACTACTTGCTGGTTGTCGGATATACAAAGATGCAGAACGAGAAGAAAATGTTATCGCAGTATATCTAGGGGCAGTCGGAGAAGGGGATGATGGTGCATACAACAAGACAAGTGAAGTAGCACTCTTGAAAAGAAGTGGGTTTTGTCGTTGTGATCAGTGA

Coding sequence (CDS)

ATGAAGAATGGATTGTCGGTTCTGGTTATTCTCATCATGCAACTAAAAACAAAACTCTTCTATCAGATGTTCGTCTACATTGTCAAGAGAAGAGTAAAGGGTCCAACAAAGTTTGGAGGTTTTGATACTTGGAAGATCGTGGATGATTTGGAGGTTTTCATTAAGAAGTTCAAGACAAAGCAGGCTAAGGATGGAAAATTGAAGGCGGACAATTTCGATGCCTATTATGATTCAGGCTGGTCGAGAGAATTGGGGGAGCTTTATGAGAAGAGGAAATTAGGGGTTTTGAGAATCCGAGTAGATCGAGCGCGGTTCAAAGAGGAGGTTTTTGATGGGATGATGGAGAAAAACTTGGTGTATTGGTGGACGATGATCAGTGGCTATGCAAGGATGGGCAATTTAGAAGAAGCACGTCATCTGTTTGAGAATATGCCAATGAGGAATGTGGTTTCTTGGAACGCAATGATAGCTGGATATGCACAGAATGAGAACTATGCAGATGCAATTGAGTTGTTCAGGCAAATGCAGCGTGAAGGCGACCCGGCACCCAACGATGTTACGCTTGTTAGCGTACTCTCCGCTTGTGCACGTCTTGGTGCTCTTGATATAGATGGAGATGAAGCATTCAAGTGCTTTGATGAAATGATTGAAGATGATGGTTTAAAGCCAAATGATATTTCCTTCATGGCTTTATTAACAGCCTGCACCCATGCTGGATTGGTTGATAAGGGGCTGAAGTATTTTGACATGATGGCTGCAGTTTATGGTATTACTCCTAAGGTTGAGCACTATGGGTGTGTGGTCGATCTGCTTAGTCGTGTCGGGCGTCTTAATCAAGCCGAGTCTTGGATTAACTCTATGCCTGTGCAGCCTAATGTAATAGTTTGGGGTGCACTACTTGCTGGTTGTCGGATATACAAAGATGCAGAACGAGAAGAAAATGTTATCGCAGTATATCTAGGGGCAGTCGGAGAAGGGGATGATGGTGCATACAACAAGACAAGTGAAGTAGCACTCTTGAAAAGAAGTGGGTTTTGTCGTTGTGATCAGTGA

Protein sequence

MKNGLSVLVILIMQLKTKLFYQMFVYIVKRRVKGPTKFGGFDTWKIVDDLEVFIKKFKTKQAKDGKLKADNFDAYYDSGWSRELGELYEKRKLGVLRIRVDRARFKEEVFDGMMEKNLVYWWTMISGYARMGNLEEARHLFENMPMRNVVSWNAMIAGYAQNENYADAIELFRQMQREGDPAPNDVTLVSVLSACARLGALDIDGDEAFKCFDEMIEDDGLKPNDISFMALLTACTHAGLVDKGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWGALLAGCRIYKDAEREENVIAVYLGAVGEGDDGAYNKTSEVALLKRSGFCRCDQ
Homology
[Close]
BLAST of Carg23144 vs. NCBI nr
Match: XP_023523583.1 (pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 1.9e-31
Identity = 89/199 (44.72%), Postives = 93/199 (46.73%), Query Frame = 0 

Query: 177 REGDPAPNDVTLVSVLSACARLGALDID-------------------------------- 236
           REGDPAPNDVTLVSVLSACA LGALD+                                 
Sbjct: 247 REGDPAPNDVTLVSVLSACAHLGALDLGKWIHKFIRRSKMEVGLFLGNALADMYAKCGCI 306

Query: 237 ------------------------------GDXXXXXXXXXXXXXXXXXXXXXXXXXXXX 296
                                          D                            
Sbjct: 307 LEAKRVFHEMQERDVTSWSIIIMGLAMYGYADEAFNCFAKMIEDDGLKPNDISFMGLLTA 366

Query: 297 XXXXXXXXKGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVI 314
                   KGL+YFDMMA VYGITPKVEHYGCVVDLLSR GRL+QAES INSMP+QPNVI
Sbjct: 367 CTHAGLVDKGLEYFDMMAEVYGITPKVEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVI 426

[Close]
BLAST of Carg23144 vs. NCBI nr
Match: XP_022940581.1 (pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita moschata])

HSP 1 Score: 146.0 bits (367), Expect = 2.4e-31
Identity = 89/198 (44.95%), Postives = 92/198 (46.46%), Query Frame = 0 

Query: 178 EGDPAPNDVTLVSVLSACARLGALDID--------------------------------- 237
           EGDPAPNDVTLVSVLSACA LGALD+                                  
Sbjct: 248 EGDPAPNDVTLVSVLSACAHLGALDLGKWIHKFIRRSKMEVGLFLGNALADMYAKCGCIL 307

Query: 238 -----------------------------GDXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 297
                                         D                             
Sbjct: 308 EAKRVFHEMQERDVTSWSIIIMGLAMYGYADEAFKCFAKMIEDDGLKPNDISFMGLLTAC 367

Query: 298 XXXXXXXKGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIV 314
                  KGLKYFDMMA VYGITPKVEHYGCVVDLLSR GRL+QAES INSMP+QPNVIV
Sbjct: 368 THAGLVDKGLKYFDMMAEVYGITPKVEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIV 427

[Close]
BLAST of Carg23144 vs. NCBI nr
Match: XP_022980959.1 (pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita maxima])

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 86/198 (43.43%), Postives = 91/198 (45.96%), Query Frame = 0 

Query: 178 EGDPAPNDVTLVSVLSACARLGALDID--------------------------------- 237
           EGDPAPNDVTLVSVLSACA LGALD+                                  
Sbjct: 248 EGDPAPNDVTLVSVLSACAHLGALDLGKWIHKFIRRSKMEVGLFLGNALADMYAKCGCIL 307

Query: 238 -----------------------------GDXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 297
                                         D                             
Sbjct: 308 EAKRVFHEMQERDVTSWSIIIMGLAMYGYADEAFKCFDEMIEDDGLKPNDISFMGLLTSC 367

Query: 298 XXXXXXXKGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIV 314
                  KGL+YFDMMA VYGITPKVEHYGCVVDLLSR GRL+QAES INSMP+ PNVIV
Sbjct: 368 THAGLVDKGLEYFDMMAEVYGITPKVEHYGCVVDLLSRAGRLDQAESLINSMPMLPNVIV 427

[Close]
BLAST of Carg23144 vs. NCBI nr
Match: XP_011652887.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis sativus] >KGN60310.1 hypothetical protein Csa_3G895070 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-28
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 243 KGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWGALLAG 302
           KGL+YFDMM  VYGITPK+EHYGCVVDLLSR GRL+QAES INSMP+QPNVIVWGALL G
Sbjct: 410 KGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 469

Query: 303 CRIYKDAEREENVI 317
           CRIYKDAER E V+
Sbjct: 470 CRIYKDAERGERVV 483

[Close]
BLAST of Carg23144 vs. NCBI nr
Match: XP_016903603.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-28
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 243 KGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWGALLAG 302
           KGL+YFDMMA VYGITPK+EHYGCV+DLLSR GRL+QAES INSMP+QPNVIVWGALL G
Sbjct: 374 KGLEYFDMMAQVYGITPKIEHYGCVIDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 433

Query: 303 CRIYKDAEREENVI 317
           CRIYKDA R E V+
Sbjct: 434 CRIYKDAVRGERVV 447

[Close]
BLAST of Carg23144 vs. TAIR10
Match: AT1G77170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-21
Identity = 67/240 (27.92%), Postives = 97/240 (40.42%), Query Frame = 0 

Query: 102 RARFKEEVFDGMMEKNLVYWWTMISGYARMGNLEEAXXXXXXXXXXXXXXXXXXXXXXXX 161
           R      +F+ M ++N+V W +MI GYA  GN  EA                        
Sbjct: 270 RMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEA------------------------ 329

Query: 162 XXXXXXXXXXXXXXXREGDPAPNDVTLVSVLSACARLGALDIDGDXXXXXXXXXXXXXXX 221
                          RE    PN +T V VLSAC   G ++                   
Sbjct: 330 --------LECFRQMREFGVRPNKITFVGVLSACVHGGLVE------------------- 389

Query: 222 XXXXXXXXXXXXXXXXXXXXXKGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAE 281
                                +G  YF MM + + + P + HYGC+VDLLSR G+L +A+
Sbjct: 390 ---------------------EGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAK 436

Query: 282 SWINSMPVQPNVIVWGALLAGCRIYKDAEREENVIAVYLGAVGEGDDGAYNKTSEVALLK 341
             +  MP++PNV+VWG L+ GC  + D E  E  +A Y+  +   +DG Y   + V  L+
Sbjct: 450 KVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAE-WVAPYMVELEPWNDGVYVVLANVYALR 436

[Close]
BLAST of Carg23144 vs. TAIR10
Match: AT4G14850.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 95.9 bits (237), Expect = 5.3e-20
Identity = 60/200 (30.00%), Postives = 81/200 (40.50%), Query Frame = 0 

Query: 107 EEVFDGMMEKNLVYWWTMISGYARMGNLEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 166
           E+ FD M EKNLV   ++I GYA  G ++ A                             
Sbjct: 365 EQAFDEMPEKNLVTRNSLIGGYAHQGQVDMA----------------------------- 424

Query: 167 XXXXXXXXXXREGDPAPNDVTLVSVLSACARLGALDIDGDXXXXXXXXXXXXXXXXXXXX 226
                     R   P PN +T VS+LSAC+R GA++                        
Sbjct: 425 -LALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVE------------------------ 484

Query: 227 XXXXXXXXXXXXXXXXKGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINS 286
                            G+K FD M + YGI P  EHY C+VD+L R G + +A  +I  
Sbjct: 485 ----------------NGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKK 494

Query: 287 MPVQPNVIVWGALLAGCRIY 307
           MP+QP + VWGAL   CR++
Sbjct: 545 MPIQPTISVWGALQNACRMH 494

[Close]
BLAST of Carg23144 vs. TAIR10
Match: AT3G29230.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 5.8e-19
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 0 

Query: 243 KGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWGALLAG 302
           +G+ YF  M  VY + P+VEHYGC+VDLL RVGRL +A   + +MP++PNV++WGALL  
Sbjct: 434 EGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGA 493

Query: 303 CRIYKDAEREENVIAVYLGAVGEGDDGAYNKTSEV 338
           CR++ + +  + V+   L  +   D G Y+  S +
Sbjct: 494 CRMHNEVDIAKEVLD-NLVKLDPCDPGNYSLLSNI 527

[Close]
BLAST of Carg23144 vs. TAIR10
Match: AT3G05240.1 (mitochondrial editing factor 19)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-18
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 0 

Query: 178 EGDPAPNDVTLVSVLSACARLGALDIDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 237
           +G+  P+ +T + VL AC+ +G ++                                   
Sbjct: 412 KGNATPDGITYLGVLYACSHIGLVE----------------------------------- 471

Query: 238 XXXXXKGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWG 297
                +G +YF  M  ++G+ P VEHYGC+VD+LSR GR  +AE  + +MPV+PNV +WG
Sbjct: 472 -----EGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWG 509

Query: 298 ALLAGCRIYKDAEREENV 316
           ALL GC I+++ E  + +
Sbjct: 532 ALLNGCDIHENLELTDRI 509

[Close]
BLAST of Carg23144 vs. TAIR10
Match: AT4G13650.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-18
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 0 

Query: 183 PNDVTLVSVLSACARLGALDIDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242
           PN VTLV VLSAC+ +G +D                                        
Sbjct: 791 PNHVTLVGVLSACSHIGLVD---------------------------------------- 850

Query: 243 KGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWGALLAG 302
           KG+ YF+ M + YG++PK EHY CVVD+L+R G L++A+ +I  MP++P+ +VW  LL+ 
Sbjct: 851 KGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 878

Query: 303 CRIYKDAE 311
           C ++K+ E
Sbjct: 911 CVVHKNME 878

[Close]
BLAST of Carg23144 vs. Swiss-Prot
Match: sp|Q3ECB8|PP128_ARATH (Pentatricopeptide repeat-containing protein At1g77170, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E21 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.9e-20
Identity = 67/240 (27.92%), Postives = 97/240 (40.42%), Query Frame = 0 

Query: 102 RARFKEEVFDGMMEKNLVYWWTMISGYARMGNLEEAXXXXXXXXXXXXXXXXXXXXXXXX 161
           R      +F+ M ++N+V W +MI GYA  GN  EA                        
Sbjct: 270 RMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEA------------------------ 329

Query: 162 XXXXXXXXXXXXXXXREGDPAPNDVTLVSVLSACARLGALDIDGDXXXXXXXXXXXXXXX 221
                          RE    PN +T V VLSAC   G ++                   
Sbjct: 330 --------LECFRQMREFGVRPNKITFVGVLSACVHGGLVE------------------- 389

Query: 222 XXXXXXXXXXXXXXXXXXXXXKGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAE 281
                                +G  YF MM + + + P + HYGC+VDLLSR G+L +A+
Sbjct: 390 ---------------------EGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAK 436

Query: 282 SWINSMPVQPNVIVWGALLAGCRIYKDAEREENVIAVYLGAVGEGDDGAYNKTSEVALLK 341
             +  MP++PNV+VWG L+ GC  + D E  E  +A Y+  +   +DG Y   + V  L+
Sbjct: 450 KVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAE-WVAPYMVELEPWNDGVYVVLANVYALR 436

[Close]
BLAST of Carg23144 vs. Swiss-Prot
Match: sp|Q0WSH6|PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana OX=3702 GN=LOI1 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.5e-19
Identity = 60/200 (30.00%), Postives = 81/200 (40.50%), Query Frame = 0 

Query: 107 EEVFDGMMEKNLVYWWTMISGYARMGNLEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 166
           E+ FD M EKNLV   ++I GYA  G ++ A                             
Sbjct: 365 EQAFDEMPEKNLVTRNSLIGGYAHQGQVDMA----------------------------- 424

Query: 167 XXXXXXXXXXREGDPAPNDVTLVSVLSACARLGALDIDGDXXXXXXXXXXXXXXXXXXXX 226
                     R   P PN +T VS+LSAC+R GA++                        
Sbjct: 425 -LALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVE------------------------ 484

Query: 227 XXXXXXXXXXXXXXXXKGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINS 286
                            G+K FD M + YGI P  EHY C+VD+L R G + +A  +I  
Sbjct: 485 ----------------NGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKK 494

Query: 287 MPVQPNVIVWGALLAGCRIY 307
           MP+QP + VWGAL   CR++
Sbjct: 545 MPIQPTISVWGALQNACRMH 494

[Close]
BLAST of Carg23144 vs. Swiss-Prot
Match: sp|Q9LS72|PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-17
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 0 

Query: 243 KGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWGALLAG 302
           +G+ YF  M  VY + P+VEHYGC+VDLL RVGRL +A   + +MP++PNV++WGALL  
Sbjct: 434 EGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGA 493

Query: 303 CRIYKDAEREENVIAVYLGAVGEGDDGAYNKTSEV 338
           CR++ + +  + V+   L  +   D G Y+  S +
Sbjct: 494 CRMHNEVDIAKEVLD-NLVKLDPCDPGNYSLLSNI 527

[Close]
BLAST of Carg23144 vs. Swiss-Prot
Match: sp|Q9MA95|PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 4.0e-17
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 0 

Query: 178 EGDPAPNDVTLVSVLSACARLGALDIDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 237
           +G+  P+ +T + VL AC+ +G ++                                   
Sbjct: 412 KGNATPDGITYLGVLYACSHIGLVE----------------------------------- 471

Query: 238 XXXXXKGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWG 297
                +G +YF  M  ++G+ P VEHYGC+VD+LSR GR  +AE  + +MPV+PNV +WG
Sbjct: 472 -----EGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWG 509

Query: 298 ALLAGCRIYKDAEREENV 316
           ALL GC I+++ E  + +
Sbjct: 532 ALLNGCDIHENLELTDRI 509

[Close]
BLAST of Carg23144 vs. Swiss-Prot
Match: sp|Q9SVP7|PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 4.0e-17
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 0 

Query: 183 PNDVTLVSVLSACARLGALDIDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242
           PN VTLV VLSAC+ +G +D                                        
Sbjct: 791 PNHVTLVGVLSACSHIGLVD---------------------------------------- 850

Query: 243 KGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWGALLAG 302
           KG+ YF+ M + YG++PK EHY CVVD+L+R G L++A+ +I  MP++P+ +VW  LL+ 
Sbjct: 851 KGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 878

Query: 303 CRIYKDAE 311
           C ++K+ E
Sbjct: 911 CVVHKNME 878

[Close]
BLAST of Carg23144 vs. TrEMBL
Match: tr|A0A0A0LE51|A0A0A0LE51_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895070 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 7.5e-29
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 243 KGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWGALLAG 302
           KGL+YFDMM  VYGITPK+EHYGCVVDLLSR GRL+QAES INSMP+QPNVIVWGALL G
Sbjct: 410 KGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 469

Query: 303 CRIYKDAEREENVI 317
           CRIYKDAER E V+
Sbjct: 470 CRIYKDAERGERVV 483

[Close]
BLAST of Carg23144 vs. TrEMBL
Match: tr|A0A1S4E5V0|A0A1S4E5V0_CUCME (pentatricopeptide repeat-containing protein At3g62890-like OS=Cucumis melo OX=3656 GN=LOC103503614 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.7e-28
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 243 KGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWGALLAG 302
           KGL+YFDMMA VYGITPK+EHYGCV+DLLSR GRL+QAES INSMP+QPNVIVWGALL G
Sbjct: 374 KGLEYFDMMAQVYGITPKIEHYGCVIDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 433

Query: 303 CRIYKDAEREENVI 317
           CRIYKDA R E V+
Sbjct: 434 CRIYKDAVRGERVV 447

[Close]
BLAST of Carg23144 vs. TrEMBL
Match: tr|A0A2P5DDK4|A0A2P5DDK4_9ROSA (DYW domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_254390 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.4e-27
Identity = 66/134 (49.25%), Postives = 78/134 (58.21%), Query Frame = 0 

Query: 183 PNDVTLVSVLSACARLGALDIDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242
           PND+T + +L+AC  +G ++                                        
Sbjct: 354 PNDITFMGLLTACTHVGLVE---------------------------------------- 413

Query: 243 KGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWGALLAG 302
           KGL YFDMM   YGI PK+EHYGCVVDLLSR GRL++AE  INSMPV+PNVIVWGALL G
Sbjct: 414 KGLNYFDMMDQTYGIIPKIEHYGCVVDLLSRAGRLDEAEKLINSMPVKPNVIVWGALLGG 447

Query: 303 CRIYKDAEREENVI 317
           CRIYKDAER E V+
Sbjct: 474 CRIYKDAERGERVV 447

[Close]
BLAST of Carg23144 vs. TrEMBL
Match: tr|A0A1U8AFG8|A0A1U8AFG8_NELNU (pentatricopeptide repeat-containing protein At5g48910-like OS=Nelumbo nucifera OX=4432 GN=LOC104599708 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 73/169 (43.20%), Postives = 88/169 (52.07%), Query Frame = 0 

Query: 183 PNDVTLVSVLSACARLGALDIDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242
           PN++T + +LSAC   G +D                                        
Sbjct: 354 PNEITFMGLLSACTHAGLVD---------------------------------------- 413

Query: 243 KGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWGALLAG 302
           KGLKYF +M   YGITPKVEHYGCVVDLLSR GRL +AE  INSMP++PNV+VWGALL G
Sbjct: 414 KGLKYFYLMDQEYGITPKVEHYGCVVDLLSRAGRLAEAEDLINSMPIKPNVVVWGALLGG 473

Query: 303 CRIYKDAEREENVIAVYLGAVGEGDDGAY----NKTSEVALLKRSGFCR 348
           CRIYKD ER E V+   L    E   G+Y    N  + +  L  +  CR
Sbjct: 474 CRIYKDNERGERVVKQILELESE-HSGSYVYLANVYASIGRLDDAANCR 481

[Close]
BLAST of Carg23144 vs. TrEMBL
Match: tr|A0A2P5D3N1|A0A2P5D3N1_PARAD (DYW domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_100360 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 65/134 (48.51%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 183 PNDVTLVSVLSACARLGALDIDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242
           PND+T + +L+AC  +G ++                                        
Sbjct: 354 PNDITFMGLLTACTHVGLVE---------------------------------------- 413

Query: 243 KGLKYFDMMAAVYGITPKVEHYGCVVDLLSRVGRLNQAESWINSMPVQPNVIVWGALLAG 302
           KGL YFDMM   YGI PK+EHYGCVVDLLSR GRL++AE  INSMPV+PNVIVWGALL G
Sbjct: 414 KGLNYFDMMDQTYGIIPKIEHYGCVVDLLSRAGRLDEAEKLINSMPVKPNVIVWGALLGG 447

Query: 303 CRIYKDAEREENVI 317
           CR YKDAER E V+
Sbjct: 474 CRKYKDAERGERVV 447

The following BLAST results are available for this feature:
BLAST of Carg23144 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023523583.11.9e-3144.72pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita pepo subsp... [more]
XP_022940581.12.4e-3144.95pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita moschata][more]
XP_022980959.11.3e-2943.43pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita maxima][more]
XP_011652887.11.1e-2883.78PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis s... [more]
XP_016903603.12.5e-2882.43PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis m... [more]
BLAST of Carg23144 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G77170.11.6e-2127.92Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G14850.15.3e-2030.00Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G29230.15.8e-1943.16Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G05240.12.2e-1831.88mitochondrial editing factor 19[more]
AT4G13650.12.2e-1835.16Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg23144 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q3ECB8|PP128_ARATH2.9e-2027.92Pentatricopeptide repeat-containing protein At1g77170, mitochondrial OS=Arabidop... [more]
sp|Q0WSH6|PP312_ARATH9.5e-1930.00Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana OX... [more]
sp|Q9LS72|PP261_ARATH1.0e-1743.16Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX... [more]
sp|Q9MA95|PP214_ARATH4.0e-1731.88Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th... [more]
sp|Q9SVP7|PP307_ARATH4.0e-1735.16Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg23144 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LE51|A0A0A0LE51_CUCSA7.5e-2983.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895070 PE=4 SV=1[more]
tr|A0A1S4E5V0|A0A1S4E5V0_CUCME1.7e-2882.43pentatricopeptide repeat-containing protein At3g62890-like OS=Cucumis melo OX=36... [more]
tr|A0A2P5DDK4|A0A2P5DDK4_9ROSA2.4e-2749.25DYW domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_254390 ... [more]
tr|A0A1U8AFG8|A0A1U8AFG8_NELNU1.6e-2643.20pentatricopeptide repeat-containing protein At5g48910-like OS=Nelumbo nucifera O... [more]
tr|A0A2P5D3N1|A0A2P5D3N1_PARAD1.6e-2648.51DYW domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_100... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23144-RACarg23144-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 227..251
e-value: 0.021
score: 15.0
coord: 204..218
e-value: 1.1
score: 9.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 123..149
e-value: 2.0E-5
score: 22.4
coord: 150..179
e-value: 9.7E-8
score: 29.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 147..197
e-value: 2.4E-12
score: 46.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 148..182
score: 11.871
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 184..223
score: 7.563
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 260..290
score: 5.996
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 117..147
score: 9.668
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 224..259
score: 7.256
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 204..339
e-value: 2.4E-22
score: 81.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 99..203
e-value: 1.1E-24
score: 88.7
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 204..331
coord: 135..203
NoneNo IPR availablePANTHERPTHR24015:SF1027SUBFAMILY NOT NAMEDcoord: 204..331
coord: 135..203