CmoCh08G005880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G005880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ethylene-responsive transcription factor
Location	Cmo_Chr08 : 3585257 .. 3586002 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCAAACTCCGACCTCTTCCACCGTTGCACTTCCTCTTCAACCTCCTCCTCCTCCTTCTCCGACCGCCATGGCCCGACCTCAACAACGGTATCGCGGTGTTCGTCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGTAATTCTCTTCTTTTATACACTAAAAATACAAACTTTTTGAGATTTTTAATACTCCCTTCTTCTTCCTTCTTCCTTCTACTTAAAAACTTTCTTTTTCAGAAAGACGAGAATATGGTTGGGGACGTTCGAGACGGCGGAGGATGCAGCCCGAGCCTACGACGAGGCAGCGAGGCTGATGTGCGGCCCCAAAGCTAGAACTAACTTCCAACTCAATCTCAACGATCAACCCTCCTTTTCTTCTTCCTCCAACCTTCTCTCACCGGCGCTCATAGCCAAACTACACAAATGCCATTTAGCCTCACTCCAAATCACCAAAAAACACATCCATAAGCAACACCCGGGGTTCGACCTGAACGGCGGTCCTCCACCGAGCATTTCCAGGACCACCACCGGCCAGTGGCCACCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGATCAACAACAACGACAACAACAACATTCATCATCAGCCATGCCTTCAACCTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGTTGCTAGATCTCGGACCGTTCGAAATCATTACATAGCTCCAATTCCCCCCTAGATTTACT

mRNA sequence

AACCAAACTCCGACCTCTTCCACCGTTGCACTTCCTCTTCAACCTCCTCCTCCTCCTTCTCCGACCGCCATGGCCCGACCTCAACAACGGTATCGCGGTGTTCGTCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTAAAGACGAGAATATGGTTGGGGACGTTCGAGACGGCGGAGGATGCAGCCCGAGCCTACGACGAGGCAGCGAGGCTGATGTGCGGCCCCAAAGCTAGAACTAACTTCCAACTCAATCTCAACGATCAACCCTCCTTTTCTTCTTCCTCCAACCTTCTCTCACCGGCGCTCATAGCCAAACTACACAAATGCCATTTAGCCTCACTCCAAATCACCAAAAAACACATCCATAAGCAACACCCGGGGTTCGACCTGAACGGCGGTCCTCCACCGAGCATTTCCAGGACCACCACCGGCCAGTGGCCACCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGATCAACAACAACGACAACAACAACATTCATCATCAGCCATGCCTTCAACCTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGTTGCTAGATCTCGGACCGTTCGAAATCATTACATAGCTCCAATTCCCCCCTAGATTTACT

Coding sequence (CDS)

ATGGCCCGACCTCAACAACGGTATCGCGGTGTTCGTCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTAAAGACGAGAATATGGTTGGGGACGTTCGAGACGGCGGAGGATGCAGCCCGAGCCTACGACGAGGCAGCGAGGCTGATGTGCGGCCCCAAAGCTAGAACTAACTTCCAACTCAATCTCAACGATCAACCCTCCTTTTCTTCTTCCTCCAACCTTCTCTCACCGGCGCTCATAGCCAAACTACACAAATGCCATTTAGCCTCACTCCAAATCACCAAAAAACACATCCATAAGCAACACCCGGGGTTCGACCTGAACGGCGGTCCTCCACCGAGCATTTCCAGGACCACCACCGGCCAGTGGCCACCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGATCAACAACAACGACAACAACAACATTCATCATCAGCCATGCCTTCAACCTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGTTGCTAGATCTCGGACCGTTCGAAATCATTACATAG

Homology

[Close]

BLAST of CmoCh08G005880 vs. Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-45
Identity = 107/181 (59.12%), Postives = 120/181 (66.30%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGP+AR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNF  N N  P  +SSS LLS  L AKLHKC++ASLQ+TK+                 S 
Sbjct: 61  TNFPYNPNAIP--TSSSKLLSATLTAKLHKCYMASLQMTKQ------TQTQTQTQTARSQ 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           S  + G    E           EI   D  N + Q   +PLE+DHIEQMI+ELL  G  E
Sbjct: 121 SADSDGVTANESHLNRGVTETTEIKWED-GNANMQQNFRPLEEDHIEQMIEELLHYGSIE 172

Query: 181 I 182
           +
Sbjct: 181 L 172

[Close]

BLAST of CmoCh08G005880 vs. Swiss-Prot
Match: PZ02_LUPPO (Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.3e-37
Identity = 78/100 (78.00%), Postives = 86/100 (86.00%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAARLMCG +AR
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITK 101
           TNF  N N   S SSSS LLS  LIAKLH+C++ASLQ+T+
Sbjct: 61  TNFPYNPN--ASQSSSSKLLSATLIAKLHRCYMASLQMTR 98

[Close]

BLAST of CmoCh08G005880 vs. Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.6e-25
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 1


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQL 65
           +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNF L
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  NLND---------------QPSFSSSSNLLSPALIAKLHKC 92
           N N+                 S S+SS+ LS  L AKL KC
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKC 105

[Close]

BLAST of CmoCh08G005880 vs. Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.2e-21
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQ- 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNF  
Sbjct: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66 LNLNDQPSFSSSSNLLSPALIAKL 89
          +  N   S   +S L SP  +++L
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSEL 88

[Close]

BLAST of CmoCh08G005880 vs. Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.9e-21
Identity = 51/86 (59.30%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQL 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNF +
Sbjct: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66 NLNDQPS---FSSSSNLLSPALIAKL 89
            +++ S      +S L+SP  +++L
Sbjct: 65 VKSEEGSDHVKDVNSPLMSPKSLSEL 90

[Close]

BLAST of CmoCh08G005880 vs. TrEMBL
Match: A0A0A0KA12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432080 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.8e-76
Identity = 152/196 (77.55%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQ---PSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFD-----L 120
           TNF  N NDQ    SFSSSS LLS ALI KLHKCHLASLQI K+H+HKQH GF+      
Sbjct: 61  TNFPYNPNDQQSSSSFSSSSKLLSAALIEKLHKCHLASLQIAKQHVHKQHAGFEPSYLAY 120

Query: 121 NGGPPPSISRTTTGQWPPEETWVYSDEA-QMEINNND---NNNIHHQPC-LQPLEDDHIE 180
           +G PPP I+  TT QW  +ETWVYS++  QME+NNN+   NNNIHHQ C L+PLEDDHIE
Sbjct: 121 SGSPPPIITGATTSQWASDETWVYSNKGDQMEMNNNNNNYNNNIHHQQCQLEPLEDDHIE 180

Query: 181 QMIQELLDLGPFEIIT 184
           QMIQELLDLG FEIIT
Sbjct: 181 QMIQELLDLGSFEIIT 196

[Close]

BLAST of CmoCh08G005880 vs. TrEMBL
Match: A0A067E3X8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030482mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.4e-51
Identity = 114/181 (62.98%), Postives = 124/181 (68.51%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNF  N N+    SSSS LLS  L AKLHKCH+ASLQ TKK++ K          P    
Sbjct: 61  TNFPYNPNEPQ--SSSSKLLSATLAAKLHKCHMASLQATKKNVPKPPAVLQSQCKPFAGK 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           S  T+  W PE  W+  D      NN+           + LEDDHIEQMI+ELLD G  E
Sbjct: 121 SIDTSAGW-PETKWINEDTQVRSTNNSQQ--------FKALEDDHIEQMIEELLDYGSIE 170

Query: 181 I 182
           +
Sbjct: 181 L 170

[Close]

BLAST of CmoCh08G005880 vs. TrEMBL
Match: V4S0C2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026602mg PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-50
Identity = 114/181 (62.98%), Postives = 126/181 (69.61%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNF  N N+    SSSS LLS  L AKLHKCH+ASLQ TKK++ K          P    
Sbjct: 61  TNFPYNPNEPQ--SSSSKLLSATLAAKLHKCHMASLQATKKNVPKPPAVLQSQCKPFAGK 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           S   +  W PE  W+ ++E Q+   NN           + LEDDHIEQMI+ELLD G  E
Sbjct: 121 SIDASAGW-PETKWI-NEETQVRSTNNSQQ-------FKALEDDHIEQMIEELLDYGSIE 170

Query: 181 I 182
           +
Sbjct: 181 L 170

[Close]

BLAST of CmoCh08G005880 vs. TrEMBL
Match: F6H3U5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06000 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.2e-49
Identity = 116/192 (60.42%), Postives = 132/192 (68.75%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGP+AR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNF  N N   S SSSS LLS  L AKLH+C++ASLQ+TK+ +H+          PP S 
Sbjct: 61  TNFPYNPN--ASQSSSSKLLSATLTAKLHRCYMASLQLTKQSLHEPQK-------PPTSH 120

Query: 121 SRTTT---------GQWPPEE--TWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQM 180
             TTT         GQW PE+    V   EA   +     ++   Q   +PLEDDHI+QM
Sbjct: 121 VATTTSIAGKVGESGQWSPEKRPVTVQQPEANWVVKKVQVDSNTQQ--FKPLEDDHIQQM 180

Query: 181 IQELLDLGPFEI 182
           I+ELLD G  E+
Sbjct: 181 IEELLDYGSIEL 181

[Close]

BLAST of CmoCh08G005880 vs. TrEMBL
Match: A0A059BXE2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03947 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 7.0e-49
Identity = 116/189 (61.38%), Postives = 127/189 (67.20%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           M R QQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MTRTQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQ----HPGFDLNGGP 120
           TNF  N N+    +SSS LLS  L AKLHKCHLASLQ+ KK   K+    HPG     G 
Sbjct: 61  TNFPYNPNEPQ--TSSSKLLSATLAAKLHKCHLASLQVAKKSAKKEIDDSHPGHFRREGD 120

Query: 121 PPSISRT---TTGQWPPEE-TWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQE 180
             S  R      G W  E+ T V   E   + +    +N   Q   +PLEDDHIEQMI+E
Sbjct: 121 RTSSQRNGDQRVGGWSEEKPTVVQWHEMNWDSDEGQGDNSVQQ--FRPLEDDHIEQMIEE 180

Query: 181 LLDLGPFEI 182
           LLD G  E+
Sbjct: 181 LLDYGSIEL 185

[Close]

BLAST of CmoCh08G005880 vs. TAIR10
Match: AT5G25190.1 (AT5G25190.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-46
Identity = 107/181 (59.12%), Postives = 120/181 (66.30%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGP+AR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNF  N N  P  +SSS LLS  L AKLHKC++ASLQ+TK+                 S 
Sbjct: 61  TNFPYNPNAIP--TSSSKLLSATLTAKLHKCYMASLQMTKQ------TQTQTQTQTARSQ 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           S  + G    E           EI   D  N + Q   +PLE+DHIEQMI+ELL  G  E
Sbjct: 121 SADSDGVTANESHLNRGVTETTEIKWED-GNANMQQNFRPLEEDHIEQMIEELLHYGSIE 172

Query: 181 I 182
           +
Sbjct: 181 L 172

[Close]

BLAST of CmoCh08G005880 vs. TAIR10
Match: AT1G15360.1 (AT1G15360.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-26
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 1


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQL 65
           +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNF L
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  NLND---------------QPSFSSSSNLLSPALIAKLHKC 92
           N N+                 S S+SS+ LS  L AKL KC
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKC 105

[Close]

BLAST of CmoCh08G005880 vs. TAIR10
Match: AT5G25390.2 (AT5G25390.2 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-22
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQ- 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNF  
Sbjct: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66 LNLNDQPSFSSSSNLLSPALIAKL 89
          +  N   S   +S L SP  +++L
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSEL 88

[Close]

BLAST of CmoCh08G005880 vs. TAIR10
Match: AT5G11190.1 (AT5G11190.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 101.7 bits (252), Expect = 5.0e-22
Identity = 51/86 (59.30%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQL 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNF +
Sbjct: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66 NLNDQPS---FSSSSNLLSPALIAKL 89
            +++ S      +S L+SP  +++L
Sbjct: 65 VKSEEGSDHVKDVNSPLMSPKSLSEL 90

[Close]

BLAST of CmoCh08G005880 vs. TAIR10
Match: AT3G20310.1 (AT3G20310.1 ethylene response factor 7)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-18
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 5   QQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQ 64
           + RYRGVR+R WG + +EIR PL K+R+WLGTF++A DAARAYD AAR + GPKA+TNF 
Sbjct: 24  EPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83

Query: 65  LNLND----QP-SFSSSSNLLSPALI 86
           ++ +     QP ++  + NL SP +I
Sbjct: 84  IDCSPSSPLQPLTYLHNQNLCSPPVI 109

[Close]

BLAST of CmoCh08G005880 vs. NCBI nr
Match: gi|659122485|ref|XP_008461170.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo])

HSP 1 Score: 299.3 bits (765), Expect = 4.6e-78
Identity = 153/202 (75.74%), Postives = 164/202 (81.19%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQP-----SFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFD---- 120
           TNF  NLNDQ      S SSSS LLS ALI KLHKCHLASLQI K+H+HKQHPGF+    
Sbjct: 61  TNFPYNLNDQQSSSSFSSSSSSKLLSAALIEKLHKCHLASLQIAKQHVHKQHPGFEPSYL 120

Query: 121 -LNGGPPPSISRTTTGQWPPEETWVYSDEAQMEI--------NNNDNNNIHHQPC-LQPL 180
              G PPPSI+  TT +W  +ETWVYSD+ Q+E+        NNN+NNNIHHQ C L+PL
Sbjct: 121 AYGGSPPPSITGATTSRWTSDETWVYSDKGQLEMNNNNNNNNNNNNNNNIHHQQCQLEPL 180

Query: 181 EDDHIEQMIQELLDLGPFEIIT 184
           EDDHIEQMIQELLDLG FEIIT
Sbjct: 181 EDDHIEQMIQELLDLGSFEIIT 202

[Close]

BLAST of CmoCh08G005880 vs. NCBI nr
Match: gi|778728957|ref|XP_011659507.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 2.5e-76
Identity = 152/196 (77.55%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQ---PSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFD-----L 120
           TNF  N NDQ    SFSSSS LLS ALI KLHKCHLASLQI K+H+HKQH GF+      
Sbjct: 61  TNFPYNPNDQQSSSSFSSSSKLLSAALIEKLHKCHLASLQIAKQHVHKQHAGFEPSYLAY 120

Query: 121 NGGPPPSISRTTTGQWPPEETWVYSDEA-QMEINNND---NNNIHHQPC-LQPLEDDHIE 180
           +G PPP I+  TT QW  +ETWVYS++  QME+NNN+   NNNIHHQ C L+PLEDDHIE
Sbjct: 121 SGSPPPIITGATTSQWASDETWVYSNKGDQMEMNNNNNNYNNNIHHQQCQLEPLEDDHIE 180

Query: 181 QMIQELLDLGPFEIIT 184
           QMIQELLDLG FEIIT
Sbjct: 181 QMIQELLDLGSFEIIT 196

[Close]

BLAST of CmoCh08G005880 vs. NCBI nr
Match: gi|1012229873|ref|XP_015938082.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Arachis duranensis])

HSP 1 Score: 210.7 bits (535), Expect = 2.2e-51
Identity = 128/210 (60.95%), Postives = 137/210 (65.24%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLN---DQPSFSSSSNLLSPALIAKLHKCHLAS--LQITKKHIHKQHPGFDLNGG 120
           TNF  N N      S SSSS LLSP L AKLHKCHLAS  LQ++        P  D    
Sbjct: 61  TNFPFNPNLSQSSSSSSSSSKLLSPTLTAKLHKCHLASLALQMSNNKQKSSQPNKDPQPP 120

Query: 121 PPPSISRTTT------GQWP-PEETWVYSDEAQMEINNNDNNNI-----------HH--- 180
           PP S S T++       Q+P    T  Y +   +E NNN+NNNI           HH   
Sbjct: 121 PPSSSSSTSSNNRLFNNQFPIGAGTIAYEELHWLEGNNNNNNNINNNNWGGIIEGHHQVE 180

Query: 181 --QPCLQP-LEDDHIEQMIQELLDLGPFEI 182
             Q   QP LEDDHIEQMIQELLD G  E+
Sbjct: 181 VAQQQFQPVLEDDHIEQMIQELLDCGSIEL 210

[Close]

BLAST of CmoCh08G005880 vs. NCBI nr
Match: gi|568821626|ref|XP_006465255.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Citrus sinensis])

HSP 1 Score: 209.9 bits (533), Expect = 3.7e-51
Identity = 115/181 (63.54%), Postives = 125/181 (69.06%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNF  N N+  S SSSS LLS  L AKLHKCH+ASLQ TKK++ K          P    
Sbjct: 61  TNFPYNPNE--SQSSSSKLLSATLAAKLHKCHMASLQATKKNVPKPPAVLQSQCKPFAGK 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           S  T+  W PE  W+  D      NN+           + LEDDHIEQMI+ELLD G  E
Sbjct: 121 SIDTSAGW-PETKWINEDTQVRSTNNSQQ--------FKALEDDHIEQMIEELLDYGSIE 170

Query: 181 I 182
           +
Sbjct: 181 L 170

[Close]

BLAST of CmoCh08G005880 vs. NCBI nr
Match: gi|641826372|gb|KDO45596.1| (hypothetical protein CISIN_1g030482mg [Citrus sinensis])

HSP 1 Score: 209.1 bits (531), Expect = 6.3e-51
Identity = 114/181 (62.98%), Postives = 124/181 (68.51%), Query Frame = 1


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNF  N N+    SSSS LLS  L AKLHKCH+ASLQ TKK++ K          P    
Sbjct: 61  TNFPYNPNEPQ--SSSSKLLSATLAAKLHKCHMASLQATKKNVPKPPAVLQSQCKPFAGK 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           S  T+  W PE  W+  D      NN+           + LEDDHIEQMI+ELLD G  E
Sbjct: 121 SIDTSAGW-PETKWINEDTQVRSTNNSQQ--------FKALEDDHIEQMIEELLDYGSIE 170

Query: 181 I 182
           +
Sbjct: 181 L 170

The following BLAST results are available for this feature:

BLAST of CmoCh08G005880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERF03_ARATH	2.3e-45	59.12	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF00...	[more]
PZ02_LUPPO	2.3e-37	78.00	Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1	[more]
WIN1_ARATH	4.6e-25	61.39	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE...	[more]
SHN3_ARATH	5.2e-21	60.71	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3...	[more]
SHN2_ARATH	8.9e-21	59.30	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2...	[more]

BLAST of CmoCh08G005880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA12_CUCSA	1.8e-76	77.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432080 PE=4 SV=1	[more]
A0A067E3X8_CITSI	4.4e-51	62.98	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030482mg PE=4 SV=1	[more]
V4S0C2_9ROSI	1.3e-50	62.98	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026602mg PE=4 SV=1	[more]
F6H3U5_VITVI	3.2e-49	60.42	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06000 PE=4 SV=...	[more]
A0A059BXE2_EUCGR	7.0e-49	61.38	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03947 PE=4 SV=1	[more]

BLAST of CmoCh08G005880 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25190.1	1.3e-46	59.12	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	2.6e-26	61.39	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.2	2.9e-22	60.71	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	5.0e-22	59.30	Integrase-type DNA-binding superfamily protein	[more]
AT3G20310.1	1.5e-18	53.49	ethylene response factor 7	[more]

BLAST of CmoCh08G005880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122485\|ref\|XP_008461170.1\|	4.6e-78	75.74	PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo]	[more]
gi\|778728957\|ref\|XP_011659507.1\|	2.5e-76	77.55	PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis sativus...	[more]
gi\|1012229873\|ref\|XP_015938082.1\|	2.2e-51	60.95	PREDICTED: ethylene-responsive transcription factor ERF003-like [Arachis duranen...	[more]
gi\|568821626\|ref\|XP_006465255.1\|	3.7e-51	63.54	PREDICTED: ethylene-responsive transcription factor ERF003-like [Citrus sinensis...	[more]
gi\|641826372\|gb\|KDO45596.1\|	6.3e-51	62.98	hypothetical protein CISIN_1g030482mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf
IPR017392	AP2/ERF-transcript_factor

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G005880.1	CmoCh08G005880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 8..19 score: 2.9E-11coord: 30..46 score: 2.9
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 7..64 score: 5.0
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 7..56 score: 2.0
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 7..70 score: 3.0
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 7..64 score: 20
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 7..66 score: 7.85
IPR017392	AP2/ERF transcription factor ERF/PTI6	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 1..181 score: 1.1
None	No IPR available	PANTHER	PTHR31194:SF4	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003	coord: 1..181 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G005880	Cucsa.105830	Cucumber (Gy14) v1	cgycmoB0240
CmoCh08G005880	CmaCh17G008890	Cucurbita maxima (Rimu)	cmacmoB374
CmoCh08G005880	CmaCh01G001720	Cucurbita maxima (Rimu)	cmacmoB490
CmoCh08G005880	CmaCh08G005960	Cucurbita maxima (Rimu)	cmacmoB913
CmoCh08G005880	Cla015332	Watermelon (97103) v1	cmowmB844
CmoCh08G005880	Csa7G432080	Cucumber (Chinese Long) v2	cmocuB900
CmoCh08G005880	MELO3C023458	Melon (DHL92) v3.5.1	cmomeB808
CmoCh08G005880	ClCG09G003240	Watermelon (Charleston Gray)	cmowcgB786
CmoCh08G005880	ClCG07G012410	Watermelon (Charleston Gray)	cmowcgB805
CmoCh08G005880	CSPI07G20200	Wild cucumber (PI 183967)	cmocpiB913
CmoCh08G005880	Lsi02G026750	Bottle gourd (USVL1VR-Ls)	cmolsiB809
CmoCh08G005880	Cp4.1LG17g08820	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G005880	Cp4.1LG12g07360	Cucurbita pepo (Zucchini)	cmocpeB839
CmoCh08G005880	MELO3C023458.2	Melon (DHL92) v3.6.1	cmomedB911
CmoCh08G005880	CsaV3_7G031980	Cucumber (Chinese Long) v3	cmocucB1066
CmoCh08G005880	Cla97C09G165470	Watermelon (97103) v2	cmowmbB917
CmoCh08G005880	CsGy7G018470	Cucumber (Gy14) v2	cgybcmoB955
CmoCh08G005880	Carg13510	Silver-seed gourd	carcmoB0610
CmoCh08G005880	Carg09615	Silver-seed gourd	carcmoB1379

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G005880	CmoCh17G008580	Cucurbita moschata (Rifu)	cmocmoB319
CmoCh08G005880	CmoCh01G001790	Cucurbita moschata (Rifu)	cmocmoB378

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G005880	Wax gourd	cmowgoB1126
CmoCh08G005880	Cucurbita moschata (Rifu)	cmocmoB234