CmoCh08G001740 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G001740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr08 : 1001631 .. 1002017 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAAACCCGAAGCGAAAGTGCTTCATGAGGCGTCTATATCGAGCCGCAAGATCCGCCGGAAAAGCCAAAGCCAAAGGGAAGCAAAGCAACCCGCCGGCGTCGATGGATTTCGCGACGGAGACGGTCGGCAGTGGTGGCTGCGGGCGTTTTTGGGAGAGGAGCGAGATGCGATCTGAGAGTTACCCGAACAAATCGGCGGCCGCGCCGCGAGCAGGACAGAAGCAGGCTTCGTCGGCGCACGGCGGATTTCGCGACGGAAACGGTGAAATGCGGGGAACTTACGGTGGCTACGGCGGCGACGAGAATGTGGATGTAAAGGCGACGACGTACATACTGTGGGTAAGAGAGCGTTTGAAGATGGAGAGGTCAATGGCGGACTGA

mRNA sequence

ATGGAGAAAAACCCGAAGCGAAAGTGCTTCATGAGGCGTCTATATCGAGCCGCAAGATCCGCCGGAAAAGCCAAAGCCAAAGGGAAGCAAAGCAACCCGCCGGCGTCGATGGATTTCGCGACGGAGACGGTCGGCAGTGGTGGCTGCGGGCGTTTTTGGGAGAGGAGCGAGATGCGATCTGAGAGTTACCCGAACAAATCGGCGGCCGCGCCGCGAGCAGGACAGAAGCAGGCTTCGTCGGCGCACGGCGGATTTCGCGACGGAAACGGTGAAATGCGGGGAACTTACGGTGGCTACGGCGGCGACGAGAATGTGGATGTAAAGGCGACGACGTACATACTGTGGGTAAGAGAGCGTTTGAAGATGGAGAGGTCAATGGCGGACTGA

Coding sequence (CDS)

ATGGAGAAAAACCCGAAGCGAAAGTGCTTCATGAGGCGTCTATATCGAGCCGCAAGATCCGCCGGAAAAGCCAAAGCCAAAGGGAAGCAAAGCAACCCGCCGGCGTCGATGGATTTCGCGACGGAGACGGTCGGCAGTGGTGGCTGCGGGCGTTTTTGGGAGAGGAGCGAGATGCGATCTGAGAGTTACCCGAACAAATCGGCGGCCGCGCCGCGAGCAGGACAGAAGCAGGCTTCGTCGGCGCACGGCGGATTTCGCGACGGAAACGGTGAAATGCGGGGAACTTACGGTGGCTACGGCGGCGACGAGAATGTGGATGTAAAGGCGACGACGTACATACTGTGGGTAAGAGAGCGTTTGAAGATGGAGAGGTCAATGGCGGACTGA
Homology
[Close]
BLAST of CmoCh08G001740 vs. TrEMBL
Match: A0A0A0KCA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094770 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-19
Identity = 73/127 (57.48%), Postives = 78/127 (61.42%), Query Frame = 1 

Query: 1   MEKNPKRKCFMRRLYRAARSAGKAKAKGKQSNPPASMDFATETVGSGGCGRFWERSEMRS 60
           ME   KRK F+RRLYRAARSAGKAK K  QSNPP     +T      G   F   SE +S
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVK--QSNPPTP---STSPNSGDGDDPFANSSETKS 60

Query: 61  ESYPNKSAAAPRAGQKQASSAHGGFRDGNGEMRGTYGGYGG-DENVDVKATTYILWVRER 120
            S PN+  AA    QKQASS H           G YGGYGG DENVDVKA TYIL V+ER
Sbjct: 61  ASNPNRPVAATTV-QKQASSTH----------HGAYGGYGGGDENVDVKAATYILLVKER 111

Query: 121 LKMERSM 127
           LKMERSM
Sbjct: 121 LKMERSM 111

[Close]
BLAST of CmoCh08G001740 vs. NCBI nr
Match: gi|700191255|gb|KGN46459.1| (hypothetical protein Csa_6G094770 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-19
Identity = 73/127 (57.48%), Postives = 78/127 (61.42%), Query Frame = 1 

Query: 1   MEKNPKRKCFMRRLYRAARSAGKAKAKGKQSNPPASMDFATETVGSGGCGRFWERSEMRS 60
           ME   KRK F+RRLYRAARSAGKAK K  QSNPP     +T      G   F   SE +S
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVK--QSNPPTP---STSPNSGDGDDPFANSSETKS 60

Query: 61  ESYPNKSAAAPRAGQKQASSAHGGFRDGNGEMRGTYGGYGG-DENVDVKATTYILWVRER 120
            S PN+  AA    QKQASS H           G YGGYGG DENVDVKA TYIL V+ER
Sbjct: 61  ASNPNRPVAATTV-QKQASSTH----------HGAYGGYGGGDENVDVKAATYILLVKER 111

Query: 121 LKMERSM 127
           LKMERSM
Sbjct: 121 LKMERSM 111

The following BLAST results are available for this feature:
BLAST of CmoCh08G001740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh08G001740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCA4_CUCSA1.4e-1957.48Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094770 PE=4 SV=1[more]
BLAST of CmoCh08G001740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh08G001740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191255|gb|KGN46459.1|2.0e-1957.48hypothetical protein Csa_6G094770 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G001740.1CmoCh08G001740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G001740CmaCh08G001710Cucurbita maxima (Rimu)cmacmoB913
CmoCh08G001740Cla000692Watermelon (97103) v1cmowmB873
CmoCh08G001740Csa6G094770Cucumber (Chinese Long) v2cmocuB883
CmoCh08G001740MELO3C022317Melon (DHL92) v3.5.1cmomeB807
CmoCh08G001740ClCG06G002120Watermelon (Charleston Gray)cmowcgB798
CmoCh08G001740CSPI06G07810Wild cucumber (PI 183967)cmocpiB896
CmoCh08G001740Lsi09G017290Bottle gourd (USVL1VR-Ls)cmolsiB806
CmoCh08G001740Cp4.1LG17g10630Cucurbita pepo (Zucchini)cmocpeB851
CmoCh08G001740MELO3C022317.2Melon (DHL92) v3.6.1cmomedB910
CmoCh08G001740CsaV3_6G008190Cucumber (Chinese Long) v3cmocucB1051
CmoCh08G001740Cla97C06G111430Watermelon (97103) v2cmowmbB894
CmoCh08G001740Bhi12G002177Wax gourdcmowgoB1086
CmoCh08G001740CsGy6G007870Cucumber (Gy14) v2cgybcmoB850
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G001740Melon (DHL92) v3.6.1cmomedB906
CmoCh08G001740Silver-seed gourdcarcmoB0023
CmoCh08G001740Silver-seed gourdcarcmoB0119
CmoCh08G001740Watermelon (97103) v2cmowmbB899
CmoCh08G001740Cucurbita moschata (Rifu)cmocmoB315
CmoCh08G001740Cucumber (Gy14) v1cgycmoB0953
CmoCh08G001740Cucurbita maxima (Rimu)cmacmoB370
CmoCh08G001740Melon (DHL92) v3.5.1cmomeB803
CmoCh08G001740Watermelon (Charleston Gray)cmowcgB802
CmoCh08G001740Watermelon (97103) v1cmowmB865
CmoCh08G001740Cucurbita pepo (Zucchini)cmocpeB856
CmoCh08G001740Bottle gourd (USVL1VR-Ls)cmolsiB800