ClCG06G002120 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G002120
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr06 : 2271464 .. 2271844 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAACCAGAAGCGGAAAGGCTTCATGAGGCGACTATATCGAGCCGCAAGATACGCCGGCAAGGCCAAAGTGAAGCAAAGCAACCCCCCGGCGGCGTCTACATCGCTACATAGCGACGGCGGCGACGACTCTTTTGCGTTGTCGAGCGAGATGAGATCTGCAAGTAATCCGAAAAGATCCATGACGACAGTGCAGAAGCAGGCCTCATCGGTGCATGGCGGATTTCGCGACGGAATCAGTGAAATGCGGGGAGCATACGGTGGTTGTGGCGGTGGTGACGAGAATGTTGACGCAAAGGCAGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATGGATCGAAAAGTTGAAGCAAATTGA

mRNA sequence

ATGGAGAAAAACCAGAAGCGGAAAGGCTTCATGAGGCGACTATATCGAGCCGCAAGATACGCCGGCAAGGCCAAAGTGAAGCAAAGCAACCCCCCGGCGGCGTCTACATCGCTACATAGCGACGGCGGCGACGACTCTTTTGCGTTGTCGAGCGAGATGAGATCTGCAAGTAATCCGAAAAGATCCATGACGACAGTGCAGAAGCAGGCCTCATCGGTGCATGGCGGATTTCGCGACGGAATCAGTGAAATGCGGGGAGCATACGGTGGTTGTGGCGGTGGTGACGAGAATGTTGACGCAAAGGCAGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATGGATCGAAAAGTTGAAGCAAATTGA

Coding sequence (CDS)

ATGGAGAAAAACCAGAAGCGGAAAGGCTTCATGAGGCGACTATATCGAGCCGCAAGATACGCCGGCAAGGCCAAAGTGAAGCAAAGCAACCCCCCGGCGGCGTCTACATCGCTACATAGCGACGGCGGCGACGACTCTTTTGCGTTGTCGAGCGAGATGAGATCTGCAAGTAATCCGAAAAGATCCATGACGACAGTGCAGAAGCAGGCCTCATCGGTGCATGGCGGATTTCGCGACGGAATCAGTGAAATGCGGGGAGCATACGGTGGTTGTGGCGGTGGTGACGAGAATGTTGACGCAAAGGCAGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATGGATCGAAAAGTTGAAGCAAATTGA

Protein sequence

MEKNQKRKGFMRRLYRAARYAGKAKVKQSNPPAASTSLHSDGGDDSFALSSEMRSASNPKRSMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRERLKMERSMDRKVEAN

Homology

[Close]

BLAST of ClCG06G002120 vs. TrEMBL
Match: A0A0A0KCA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094770 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-37
Identity = 90/125 (72.00%), Postives = 96/125 (76.80%), Query Frame = 1


Query: 1   MEKNQKRKGFMRRLYRAARYAGKAKVKQSNPPAASTSLHSDGGDDSFALSSEMRSASNPK 60
           ME  QKRKGF+RRLYRAAR AGKAKVKQSNPP  STS +S  GDD FA SSE +SASNP 
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTPSTSPNSGDGDDPFANSSETKSASNPN 60

Query: 61  R--SMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRERLKMERS 120
           R  + TTVQKQASS H           GAYGG GGGDENVD KAATYILLV+ERLKMERS
Sbjct: 61  RPVAATTVQKQASSTH----------HGAYGGYGGGDENVDVKAATYILLVKERLKMERS 115

Query: 121 MDRKV 124
           MDR+V
Sbjct: 121 MDRRV 115

[Close]

BLAST of ClCG06G002120 vs. TrEMBL
Match: A0A067LN74_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10105 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-06
Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 1


Query: 1   MEKNQKRKGFMRR----LYRAAR------YAGKAKVKQSNPPAASTS--LHSDGGDDSFA 60
           ME N+KR+GFM+      YR+++      Y+ K K  QS+P AAS    +H D       
Sbjct: 1   MESNRKRRGFMKGKLIPFYRSSKATSTVQYSSKVKPSQSSPSAASVGFVVHQD------- 60

Query: 61  LSSEMRSASNPKRSMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILL 120
                   + PK+ ++ +   A S    +     ++ G       GDE VD KAATYI  
Sbjct: 61  -----YIITPPKQKVSFIVPTADSNRDKYLSQFDKLYGV-----AGDEGVDIKAATYISS 119

Query: 121 VRERLKMERSMDRKVE 125
           V+ER K+ERS   +++
Sbjct: 121 VQERFKLERSNSERIK 119

[Close]

BLAST of ClCG06G002120 vs. NCBI nr
Match: gi|700191255|gb|KGN46459.1| (hypothetical protein Csa_6G094770 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 2.7e-37
Identity = 90/125 (72.00%), Postives = 96/125 (76.80%), Query Frame = 1


Query: 1   MEKNQKRKGFMRRLYRAARYAGKAKVKQSNPPAASTSLHSDGGDDSFALSSEMRSASNPK 60
           ME  QKRKGF+RRLYRAAR AGKAKVKQSNPP  STS +S  GDD FA SSE +SASNP 
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTPSTSPNSGDGDDPFANSSETKSASNPN 60

Query: 61  R--SMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRERLKMERS 120
           R  + TTVQKQASS H           GAYGG GGGDENVD KAATYILLV+ERLKMERS
Sbjct: 61  RPVAATTVQKQASSTH----------HGAYGGYGGGDENVDVKAATYILLVKERLKMERS 115

Query: 121 MDRKV 124
           MDR+V
Sbjct: 121 MDRRV 115

[Close]

BLAST of ClCG06G002120 vs. NCBI nr
Match: gi|802539270|ref|XP_012070196.1| (PREDICTED: uncharacterized protein LOC105632422 [Jatropha curcas])

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-06
Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 1


Query: 1   MEKNQKRKGFMRR----LYRAAR------YAGKAKVKQSNPPAASTS--LHSDGGDDSFA 60
           ME N+KR+GFM+      YR+++      Y+ K K  QS+P AAS    +H D       
Sbjct: 1   MESNRKRRGFMKGKLIPFYRSSKATSTVQYSSKVKPSQSSPSAASVGFVVHQD------- 60

Query: 61  LSSEMRSASNPKRSMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILL 120
                   + PK+ ++ +   A S    +     ++ G       GDE VD KAATYI  
Sbjct: 61  -----YIITPPKQKVSFIVPTADSNRDKYLSQFDKLYGV-----AGDEGVDIKAATYISS 119

Query: 121 VRERLKMERSMDRKVE 125
           V+ER K+ERS   +++
Sbjct: 121 VQERFKLERSNSERIK 119

The following BLAST results are available for this feature:

BLAST of ClCG06G002120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCA4_CUCSA	1.9e-37	72.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094770 PE=4 SV=1	[more]
A0A067LN74_JATCU	3.9e-06	32.35	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10105 PE=4 SV=1	[more]

BLAST of ClCG06G002120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191255\|gb\|KGN46459.1\|	2.7e-37	72.00	hypothetical protein Csa_6G094770 [Cucumis sativus]	[more]
gi\|802539270\|ref\|XP_012070196.1\|	5.6e-06	32.35	PREDICTED: uncharacterized protein LOC105632422 [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G002120.1	ClCG06G002120.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G002120	Csa6G094770	Cucumber (Chinese Long) v2	cuwcgB476
ClCG06G002120	MELO3C022317	Melon (DHL92) v3.5.1	mewcgB124
ClCG06G002120	Cla000692	Watermelon (97103) v1	wcgwmB348
ClCG06G002120	Cla97C06G111430	Watermelon (97103) v2	wcgwmbB273
ClCG06G002120	Bhi12G002177	Wax gourd	wcgwgoB491
ClCG06G002120	CSPI06G07810	Wild cucumber (PI 183967)	cpiwcgB503
ClCG06G002120	CmaCh08G001710	Cucurbita maxima (Rimu)	cmawcgB803
ClCG06G002120	CmoCh08G001740	Cucurbita moschata (Rifu)	cmowcgB798
ClCG06G002120	Lsi09G017290	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G002120	Cp4.1LG17g10630	Cucurbita pepo (Zucchini)	cpewcgB296
ClCG06G002120	CsGy6G007870	Cucumber (Gy14) v2	cgybwcgB438
ClCG06G002120	MELO3C022317.2	Melon (DHL92) v3.6.1	medwcgB119
ClCG06G002120	CsaV3_6G008190	Cucumber (Chinese Long) v3	cucwcgB497

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G002120	Wax gourd	wcgwgoB532
ClCG06G002120	Watermelon (Charleston Gray)	wcgwcgB173
ClCG06G002120	Cucumber (Gy14) v1	cgywcgB595
ClCG06G002120	Cucurbita maxima (Rimu)	cmawcgB322
ClCG06G002120	Cucurbita moschata (Rifu)	cmowcgB318
ClCG06G002120	Wild cucumber (PI 183967)	cpiwcgB254
ClCG06G002120	Watermelon (97103) v1	wcgwmB345
ClCG06G002120	Cucurbita pepo (Zucchini)	cpewcgB402
ClCG06G002120	Cucurbita pepo (Zucchini)	cpewcgB564
ClCG06G002120	Cucurbita pepo (Zucchini)	cpewcgB789
ClCG06G002120	Cucumber (Gy14) v2	cgybwcgB229
ClCG06G002120	Silver-seed gourd	carwcgB0013
ClCG06G002120	Silver-seed gourd	carwcgB0082