Cla97C06G111430 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G111430
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr06 : 2143869 .. 2144249 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAACCAGAAGCGGAAAGGCTTCATGAGGCGACTATATCGAGCCGCAAGATACGCCGGCAAGGCCAAAGTGAAGCAAAGCAACCCCCCGGCGGCGTCTACATCGCTACATAGCGACGGCGGCGACGACTCTTTTGCGTTGTCGAGCGAGATGAGATCTGCAAGTAATCCGAAAAGATCCATGACGACAGTGCAGAAGCAGGCCTCATCGGTGCATGGCGGATTTCGCGACGGAATCAGTGAAATGCGGGGAGCATACGGTGGTTGTGGCGGTGGTGACGAGAATGTTGACGCAAAGGCAGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATGGATCGAAAAGTTGAAGCAAATTGA

mRNA sequence

ATGGAGAAAAACCAGAAGCGGAAAGGCTTCATGAGGCGACTATATCGAGCCGCAAGATACGCCGGCAAGGCCAAAGTGAAGCAAAGCAACCCCCCGGCGGCGTCTACATCGCTACATAGCGACGGCGGCGACGACTCTTTTGCGTTGTCGAGCGAGATGAGATCTGCAAGTAATCCGAAAAGATCCATGACGACAGTGCAGAAGCAGGCCTCATCGGTGCATGGCGGATTTCGCGACGGAATCAGTGAAATGCGGGGAGCATACGGTGGTTGTGGCGGTGGTGACGAGAATGTTGACGCAAAGGCAGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATGGATCGAAAAGTTGAAGCAAATTGA

Coding sequence (CDS)

ATGGAGAAAAACCAGAAGCGGAAAGGCTTCATGAGGCGACTATATCGAGCCGCAAGATACGCCGGCAAGGCCAAAGTGAAGCAAAGCAACCCCCCGGCGGCGTCTACATCGCTACATAGCGACGGCGGCGACGACTCTTTTGCGTTGTCGAGCGAGATGAGATCTGCAAGTAATCCGAAAAGATCCATGACGACAGTGCAGAAGCAGGCCTCATCGGTGCATGGCGGATTTCGCGACGGAATCAGTGAAATGCGGGGAGCATACGGTGGTTGTGGCGGTGGTGACGAGAATGTTGACGCAAAGGCAGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATGGATCGAAAAGTTGAAGCAAATTGA

Protein sequence

MEKNQKRKGFMRRLYRAARYAGKAKVKQSNPPAASTSLHSDGGDDSFALSSEMRSASNPKRSMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRERLKMERSMDRKVEAN

Homology

[Close]

BLAST of Cla97C06G111430 vs. NCBI nr
Match: KGN46459.1 (hypothetical protein Csa_6G094770 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 5.5e-34
Identity = 90/125 (72.00%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MEKNQKRKGFMRRLYRAARYAGKAKVKQSNPPAASTSLHSDGGDDSFALSSEMRSASNPK 60
           ME  QKRKGF+RRLYRAAR AGKAKVKQSNPP  STS +S  GDD FA SSE +SASNP 
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTPSTSPNSGDGDDPFANSSETKSASNPN 60

Query: 61  R--SMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRERLKMERS 120
           R  + TTVQKQASS H           GAYGG GGGDENVD KAATYILLV+ERLKMERS
Sbjct: 61  RPVAATTVQKQASSTH----------HGAYGGYGGGDENVDVKAATYILLVKERLKMERS 115

Query: 121 MDRKV 124
           MDR+V
Sbjct: 121 MDRRV 115

[Close]

BLAST of Cla97C06G111430 vs. TrEMBL
Match: tr|A0A0A0KCA4|A0A0A0KCA4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094770 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.6e-34
Identity = 90/125 (72.00%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MEKNQKRKGFMRRLYRAARYAGKAKVKQSNPPAASTSLHSDGGDDSFALSSEMRSASNPK 60
           ME  QKRKGF+RRLYRAAR AGKAKVKQSNPP  STS +S  GDD FA SSE +SASNP 
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTPSTSPNSGDGDDPFANSSETKSASNPN 60

Query: 61  R--SMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRERLKMERS 120
           R  + TTVQKQASS H           GAYGG GGGDENVD KAATYILLV+ERLKMERS
Sbjct: 61  RPVAATTVQKQASSTH----------HGAYGGYGGGDENVDVKAATYILLVKERLKMERS 115

Query: 121 MDRKV 124
           MDR+V
Sbjct: 121 MDRRV 115

The following BLAST results are available for this feature:

BLAST of Cla97C06G111430 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46459.1	5.5e-34	72.00	hypothetical protein Csa_6G094770 [Cucumis sativus]	[more]

BLAST of Cla97C06G111430 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCA4\|A0A0A0KCA4_CUCSA	3.6e-34	72.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094770 PE=4 SV=1	[more]

BLAST of Cla97C06G111430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C06G111430 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G111430.1	Cla97C06G111430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..72
None	No IPR available	PANTHER	PTHR36030	FAMILY NOT NAMED	coord: 1..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G111430	Cla000692	Watermelon (97103) v1	wmwmbB411
Cla97C06G111430	Csa6G094770	Cucumber (Chinese Long) v2	cuwmbB468
Cla97C06G111430	MELO3C022317	Melon (DHL92) v3.5.1	mewmbB127
Cla97C06G111430	ClCG06G002120	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G111430	CSPI06G07810	Wild cucumber (PI 183967)	cpiwmbB495
Cla97C06G111430	CmaCh08G001710	Cucurbita maxima (Rimu)	cmawmbB920
Cla97C06G111430	CmoCh08G001740	Cucurbita moschata (Rifu)	cmowmbB894
Cla97C06G111430	Lsi09G017290	Bottle gourd (USVL1VR-Ls)	lsiwmbB026
Cla97C06G111430	CsGy6G007870	Cucumber (Gy14) v2	cgybwmbB446
Cla97C06G111430	MELO3C022317.2	Melon (DHL92) v3.6.1	medwmbB118
Cla97C06G111430	CsaV3_6G008190	Cucumber (Chinese Long) v3	cucwmbB487
Cla97C06G111430	Bhi12G002177	Wax gourd	wgowmbB086

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G111430	Silver-seed gourd	carwmbB0077
Cla97C06G111430	Silver-seed gourd	carwmbB0011
Cla97C06G111430	Silver-seed gourd	carwmbB0721
Cla97C06G111430	Cucumber (Gy14) v1	cgywmbB596
Cla97C06G111430	Cucurbita maxima (Rimu)	cmawmbB369
Cla97C06G111430	Cucurbita moschata (Rifu)	cmowmbB354
Cla97C06G111430	Watermelon (Charleston Gray)	wcgwmbB241
Cla97C06G111430	Watermelon (97103) v1	wmwmbB407