CmoCh08G001610 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G001610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Chloroplast RNA-binding protein 33
Location	Cmo_Chr08 : 928722 .. 931464 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGAGACTGTGACAGAGGGGTTTGAGCTTCTTCATCTCCGCCATGGCGAACGCCGCTAGCTGCTTATCCTCCTCGTCGTTGTCTTCTTCCTCAAGGATCCTCGGGCAGAAATTTCATAATTGTTTTCCATTGAAACAGCTGCATTCTTTGCCTTCATCCATCCACTTTGACCACTGGAAACTCTCCCGCTTGGTTTTCGTTGCTCCTCCCATGCCATGTGTTTCTTCATCTTCTTCATGCTCTCCTCGTTTCTTGAGGCATAAACACGGGGCTAGATTTCCAGTGATTTTCACTGTTCTTGATCAGGAAGCTGCGATAACAGCAGAGGTAATCGAGGAAGACGGTGTTAAGAGCGAAGACAGCGTTTCGAATCAGGAAGTGAAAAATCTGGCACGGCCTTGTGAGCTCTACGTGTGTAATTTACCGAGGAGTTGCGACATTGCAGAGTTGGTTGAGATGTTTAAACCGTTTGGTACAGTCTTGGCTGCTGAGGTAGTTTTATTTCCAAGTAATGCTTCATCGTCTGTTCTTTCGTTTTAGATTTCCAGAATGCTCTATTTGCTTCTATTTCTCTTTGGAACTTCCGTAAACAATTAGTTTAAGATCATGCTAATTGGAATCCGGAAAGCATTTTTTTTGAATTTTGATGCTTAACAAATTCAATGTACCCGAAGGTAATCATGATTCTTTAAAGGCAGGCCTTAATTCTCTTATCTGTCTGGAGTAACATTGAATGAGTTCAAGCAGTGATTATGTTTCTTTTCATGTTTTGAATGCCATTTTTTATTGATCTCTCTGTATTTTGGACCAGGTCTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGCTATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTACGGCATTAGATTGTTCTGTTAGTGTCAAATCAATTATAAGTTGTCTTAATGTTAGCCCGTTCAGTATGATTGAATGATGAATTTTATTGTCTTGAAGGATGTTGGTGGACGAGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAATGAGAAATCGCAATAACCTGCATTCATCACCCAGGAAGAACATAATTTATGAAAGTCCTTACAAAATCTATATTGGGAATCTTGCTTGGGATGTCAAACCTGAAGATCTGAGGAACCTTTTTAGCCAATTTGGAACTGTAGTCAGTGCAAAAATTTTGAATGATCGTAGAGCTGGGAAGAGTCGTCTTTACGGTTTTCTTTCTTTCTCTTCAGCTGCAGAGCGTGATGCAGCAATTTCTTTGAATGGAACAGTAAAATTCTATATCTGAATCTCTTGGAATTTGAATTTTGCATTCCATTTTTGTTTATCTTTGACCCTTTTTCATTCTTTCATGTAGGAGTTCAAGAACAGGAAACTCATTGTTAAAGAGGGTTTGGAAAGGAACGAGTCTTGACTGCAGCCCTTCTTCTTGAACAAGTAAAAGAAGAAATCTCATCTTGTTTAAATGTTCTTAATCAGTTACAAGTTTGATTTTTAGCTAAATTATTAGAAGGATCAAGTTACCTATCCTTGTGAGATCTGCATTGAGAATCTTACAAAGTTTTGCTTTGAGGGTATTAGAATCTTTGATAAGGAATACTCTAAACTGATCTTGATTTACTTAGCCTTTCTACTGGGAAGCACATATCTAAGGGTTTGCTTTGACACAGCACTACTAAGGTTTTCAAGGTTATAGGAACTTAGAACACCTGATTGGAAGAATGTTGTATCAGTAACTGTCATTAGCTAATGGGATTACGCTTGATGCTCTCGACCTATCATCGCTTCCTTCCTCTACTAGTTCTAGAGTCCAGTAGCATTTTACAACTTTGATATATAGGTCGATCACGGATTCAAGGTATAGCAAACTGGGAAGCACATATCTAAGGGTTTGCTTTGACACAGCACTACTAAGGTTTTCAAGGTTATAGGAACTTAAAACACCTGATTGGAAGAATGTTGTATCGGTGACTGTCATTAGCTAACGGGATTACGCTTAATGCTCTCGACCTATCATCACTTCCTTCCTCTACTAGTTCTAGAGTCCAGTAGCATTTTACAACTTTGGTATATAGGTCGATCACGGATTCAAGGTATAGCAAACAAGACAACTAGTCGATCCGTGACTGAGGTGCAAAGACAAAGGAATGTGGTGGGTATAAGGAGTATAACAAGCAAGAAAAGGAATGCAGGCGCTGGTAAGCGTAGAAGGGCTAGAAAGCGAAGTTAAGGTCGGTAGGCAAGCGGGTTTGGGAACGAATCCTGTTCACACGCAAACTCTTCCTGAGACTCGGTAGTTGACCTATGAGATTAAGCAAAGTTCTGATCTCGAACCTCCTTTTCCTTTACCATCATGTTCGTATGAGCAGTAGATGTATTAGATTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGATGATCAAGATTTACAATGACAATGTGTGATTCATTTATGTAAGTTTAGAAATTTTATTGATATAAGTTAATGTTTTCACCTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGGTGATCAAGATTTACAATGACAATGTGTGATTCATTTATGTAAGTTTAGAAATTTTATTGATATAAGTTAATGTTTTCACCTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGATGATCAAGATTTAC

mRNA sequence

ACTGAGACTGTGACAGAGGGGTTTGAGCTTCTTCATCTCCGCCATGGCGAACGCCGCTAGCTGCTTATCCTCCTCGTCGTTGTCTTCTTCCTCAAGGATCCTCGGGCAGAAATTTCATAATTGTTTTCCATTGAAACAGCTGCATTCTTTGCCTTCATCCATCCACTTTGACCACTGGAAACTCTCCCGCTTGGTTTTCGTTGCTCCTCCCATGCCATGTGTTTCTTCATCTTCTTCATGCTCTCCTCGTTTCTTGAGGCATAAACACGGGGCTAGATTTCCAGTGATTTTCACTGTTCTTGATCAGGAAGCTGCGATAACAGCAGAGGTAATCGAGGAAGACGGTGTTAAGAGCGAAGACAGCGTTTCGAATCAGGAAGTGAAAAATCTGGCACGGCCTTGTGAGCTCTACGTGTGTAATTTACCGAGGAGTTGCGACATTGCAGAGTTGGTTGAGATGTTTAAACCGTTTGGTACAGTCTTGGCTGCTGAGGTCTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGCTATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTACGGCATTAGATTGTTCTGATGTTGGTGGACGAGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAATGAGAAATCGCAATAACCTGCATTCATCACCCAGGAAGAACATAATTTATGAAAGTCCTTACAAAATCTATATTGGGAATCTTGCTTGGGATGTCAAACCTGAAGATCTGAGGAACCTTTTTAGCCAATTTGGAACTGTAGTCAGTGCAAAAATTTTGAATGATCGTAGAGCTGGGAAGAGTCGTCTTTACGGTTTTCTTTCTTTCTCTTCAGCTGCAGAGCGTGATGCAGCAATTTCTTTGAATGGAACAGAGTTCAAGAACAGGAAACTCATTGTTAAAGAGGGTTTGGAAAGGAACGAGTCTTGACTGCAGCCCTTCTTCTTGAACAAGTAAAAGAAGAAATCTCATCTTGTTTAAATGTTCTTAATCAGTTACAAGTTTGATTTTTAGCTAAATTATTAGAAGGATCAAGTTACCTATCCTTGTGAGATCTGCATTGAGAATCTTACAAAGTTTTGCTTTGAGGGTATTAGAATCTTTGATAAGGAATACTCTAAACTGATCTTGATTTACTTAGCCTTTCTACTGGGAAGCACATATCTAAGGGTTTGCTTTGACACAGCACTACTAAGGTTTTCAAGGTTATAGGAACTTAGAACACCTGATTGGAAGAATGTTGTATCAGTAACTGTCATTAGCTAATGGGATTACGCTTGATGCTCTCGACCTATCATCGCTTCCTTCCTCTACTAGTTCTAGAGTCCAGTAGCATTTTACAACTTTGATATATAGGTCGATCACGGATTCAAGGTATAGCAAACTGGGAAGCACATATCTAAGGGTTTGCTTTGACACAGCACTACTAAGGTTTTCAAGGTTATAGGAACTTAAAACACCTGATTGGAAGAATGTTGTATCGGTGACTGTCATTAGCTAACGGGATTACGCTTAATGCTCTCGACCTATCATCACTTCCTTCCTCTACTAGTTCTAGAGTCCAGTAGCATTTTACAACTTTGGTATATAGGTCGATCACGGATTCAAGGTATAGCAAACAAGACAACTAGTCGATCCGTGACTGAGGTGCAAAGACAAAGGAATGTGGTGGGTATAAGGAGTATAACAAGCAAGAAAAGGAATGCAGGCGCTGGTAAGCGTAGAAGGGCTAGAAAGCGAAGTTAAGGTCGGTAGGCAAGCGGGTTTGGGAACGAATCCTGTTCACACGCAAACTCTTCCTGAGACTCGGTAGTTGACCTATGAGATTAAGCAAAGTTCTGATCTCGAACCTCCTTTTCCTTTACCATCATGTTCGTATGAGCAGTAGATGTATTAGATTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGATGATCAAGATTTACAATGACAATGTGTGATTCATTTATGTAAGTTTAGAAATTTTATTGATATAAGTTAATGTTTTCACCTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGGTGATCAAGATTTACAATGACAATGTGTGATTCATTTATGTAAGTTTAGAAATTTTATTGATATAAGTTAATGTTTTCACCTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGATGATCAAGATTTAC

Coding sequence (CDS)

ATGGCGAACGCCGCTAGCTGCTTATCCTCCTCGTCGTTGTCTTCTTCCTCAAGGATCCTCGGGCAGAAATTTCATAATTGTTTTCCATTGAAACAGCTGCATTCTTTGCCTTCATCCATCCACTTTGACCACTGGAAACTCTCCCGCTTGGTTTTCGTTGCTCCTCCCATGCCATGTGTTTCTTCATCTTCTTCATGCTCTCCTCGTTTCTTGAGGCATAAACACGGGGCTAGATTTCCAGTGATTTTCACTGTTCTTGATCAGGAAGCTGCGATAACAGCAGAGGTAATCGAGGAAGACGGTGTTAAGAGCGAAGACAGCGTTTCGAATCAGGAAGTGAAAAATCTGGCACGGCCTTGTGAGCTCTACGTGTGTAATTTACCGAGGAGTTGCGACATTGCAGAGTTGGTTGAGATGTTTAAACCGTTTGGTACAGTCTTGGCTGCTGAGGTCTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGCTATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTACGGCATTAGATTGTTCTGATGTTGGTGGACGAGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAATGAGAAATCGCAATAACCTGCATTCATCACCCAGGAAGAACATAATTTATGAAAGTCCTTACAAAATCTATATTGGGAATCTTGCTTGGGATGTCAAACCTGAAGATCTGAGGAACCTTTTTAGCCAATTTGGAACTGTAGTCAGTGCAAAAATTTTGAATGATCGTAGAGCTGGGAAGAGTCGTCTTTACGGTTTTCTTTCTTTCTCTTCAGCTGCAGAGCGTGATGCAGCAATTTCTTTGAATGGAACAGAGTTCAAGAACAGGAAACTCATTGTTAAAGAGGGTTTGGAAAGGAACGAGTCTTGA

Homology

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BLAST of CmoCh08G001610 vs. Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.2e-26
Identity = 99/300 (33.00%), Postives = 149/300 (49.67%), Query Frame = 1


Query: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPC- 60
           MA++AS L   SL+  +           PL +  S  +S+ F         F  PP    
Sbjct: 1   MASSASSLHFLSLTPQT----------LPLPKPTSQTTSLSF---------FSLPPSSLN 60

Query: 61  --VSSSSSC-SPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNL 120
             +SSSSSC S RF+R    + F  I  V D +          DGV+ E        +N 
Sbjct: 61  LSLSSSSSCFSSRFVRKVTLSDFDQIEDVEDGD----------DGVEEE--------RNF 120

Query: 121 ARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKV 180
           +   +++V NLP S D A L E+F+  G V   EV  +  TG S+G G+VTM S    + 
Sbjct: 121 SPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEA 180

Query: 181 SITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKP 240
           +    +  ++ GR +RV       P+ R  ++     R    ++S  ++Y+GNLAW V  
Sbjct: 181 ACQQFNGYELDGRALRVNSGPP--PEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQ 240

Query: 241 EDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAI-SLNGTEFKNRKLIV 296
           + L  LFS+ G VV AK++ DR +G+SR +GF+++SSA E + AI SL+G +   R + V
Sbjct: 241 DALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261

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BLAST of CmoCh08G001610 vs. Swiss-Prot
Match: CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.4e-25
Identity = 73/220 (33.18%), Postives = 120/220 (54.55%), Query Frame = 1


Query: 95  EVIEEDGVKSEDSVSNQEVKNLARPCE--LYVCNLPRSCDIAELVEMFKPFGTVLAAEVS 154
           E +EE+G + E+ V  ++    A   E  LYV NLP +   +EL ++F   GTV+  ++ 
Sbjct: 89  EEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIV 148

Query: 155 RNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFA--------VDMNPKMR 214
            +  T  S+G G+VTMGSI  AK ++   + S +GGR ++V F           M  K+R
Sbjct: 149 YDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIR 208

Query: 215 NRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSR 274
           + N  +         +SP+K+Y GNL W++  + L++ F     V+ AK++ +R  G+SR
Sbjct: 209 DNNRSY--------VDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSR 268

Query: 275 LYGFLSFSSAAERDAAI-SLNGTEFKNRKLIVKEGLERNE 304
            +GF+SF SA    +A+ ++NG E + R L +    ER +
Sbjct: 269 GFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300

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BLAST of CmoCh08G001610 vs. Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.8e-25
Identity = 79/260 (30.38%), Postives = 127/260 (48.85%), Query Frame = 1


Query: 47  LSRLVFVAPPMPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSED 106
           +S   F++  +  +S SSS       +K   +FP   +VL ++        +E G     
Sbjct: 20  ISSYPFLSTQLKPISLSSSLPTLLSLNKRTTQFPTFVSVLSEDDNTLVLDDQEQGGDFPS 79

Query: 107 SVSN----QEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKG 166
            V      +E +  +   +L+V NLP   D   L ++F+  G V  AEV  N ET  S+G
Sbjct: 80  FVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRG 139

Query: 167 CGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESP 226
            G+VTM ++  A  ++      D+ GR + V  A     +         +PR    ++  
Sbjct: 140 FGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPER------APRT---FQPT 199

Query: 227 YKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAI- 286
           Y+IY+GN+ WD+    L  +FS+ G VVSA+++ DR +G+SR +GF++ SS AE   AI 
Sbjct: 200 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIA 259

Query: 287 SLNGTEFKNRKLIVKEGLER 302
           +L+G     R + V    ER
Sbjct: 260 NLDGQTLDGRTIRVNAAEER 270

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BLAST of CmoCh08G001610 vs. Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-24
Identity = 74/210 (35.24%), Postives = 121/210 (57.62%), Query Frame = 1


Query: 87  DQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTV 146
           ++E A++AE  EE+  + E+ V ++ V+       LYV NLP S   ++L E+F   GTV
Sbjct: 86  EEEVALSAEE-EEEIEEKEERVESESVEG----GRLYVGNLPFSMTSSQLSEIFAEAGTV 145

Query: 147 LAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNR 206
              E+  +  T  S+G  +VTMGS+  AK +I   D S VGGR ++V F     P+   R
Sbjct: 146 ANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNF--PEVPRGGER 205

Query: 207 NNLHSSPRKNI--IYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSR 266
             + +  R       +SP+K+Y+ NL+W +  + LR+ F+     +SAK++ DR +G+SR
Sbjct: 206 EVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSR 265

Query: 267 LYGFLSFSSAAERDAAI-SLNGTEFKNRKL 294
            +GF++FSSA   ++A+ ++N  E + R L
Sbjct: 266 GFGFITFSSAEAMNSALDTMNEVELEGRPL 288

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BLAST of CmoCh08G001610 vs. Swiss-Prot
Match: CP31A_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-23
Identity = 74/217 (34.10%), Postives = 113/217 (52.07%), Query Frame = 1


Query: 87  DQEAAITAEVIEEDGVKSEDSVSNQ-EVKNLARPCELYVCNLPRSCDIAELVEMFKPFGT 146
           D      +E  E +G  SE +VS + E    +   +L+V NL    +   L  +F+  GT
Sbjct: 116 DASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGT 175

Query: 147 VLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRN 206
           V  AEV  N ET  S+G G+VTM S++ A+ ++   +  D+ GR + V  A     +   
Sbjct: 176 VEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER 235

Query: 207 RNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRL 266
                 +PR   +YE  +++Y+GNL WDV    L  LFS+ G VV A+++ DR  G+SR 
Sbjct: 236 ------APR---VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRG 295

Query: 267 YGFLSFSSAAERDAAIS-LNGTEFKNRKLIVKEGLER 302
           +GF++ S   E + AIS L+G   + R + V    ER
Sbjct: 296 FGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323

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BLAST of CmoCh08G001610 vs. TrEMBL
Match: A0A0A0KAH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095890 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 2.5e-115
Identity = 226/307 (73.62%), Postives = 247/307 (80.46%), Query Frame = 1


Query: 1   MANAASCL---SSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPM 60
           MAN A+ L   SSSS S S  IL  K  +    KQLHS  SS HFD+ KL  L       
Sbjct: 1   MANLATSLTFSSSSSPSPSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSL------- 60

Query: 61  PCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLA 120
                         RH HG RFPV+FTVLD E+A+T E I E  VKSE S+SNQEVK LA
Sbjct: 61  --------------RHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLA 120

Query: 121 RPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS 180
           RPCELYVCNLPRSCDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS
Sbjct: 121 RPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS 180

Query: 181 ITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPE 240
           ITALD SDVGGREMRVRFAVDMN K RN NNLHSSP+KNIIYESPYK+Y+GNL+WDVKP 
Sbjct: 181 ITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPG 240

Query: 241 DLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKE 300
           DLRNLFS+FGTVVSAK+LNDRRAGKSR+YGFLSFSSAAERDA+ISL+GTE+ NRKL+V+E
Sbjct: 241 DLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVRE 286

Query: 301 GLERNES 305
           GLER+ES
Sbjct: 301 GLERSES 286

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BLAST of CmoCh08G001610 vs. TrEMBL
Match: B9RNK5_RICCO (Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1339680 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 3.1e-78
Identity = 149/248 (60.08%), Postives = 193/248 (77.82%), Query Frame = 1


Query: 57  MPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVI-EEDGVKSEDSVSNQEVKN 116
           +P +SSSSS  P         R   I  ++++E+ +  EV  EE+  +SE+    +++K 
Sbjct: 38  IPLLSSSSSLWPA----NKSKRVFAILALVNEESVVAEEVDREENENESEEDELGRQLKK 97

Query: 117 LARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAK 176
             RPCELYVCNLPRSCDIAELVE+FKP+GTV++ EVSRNPETGIS+GCG+VTMGSINSAK
Sbjct: 98  QPRPCELYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGISRGCGFVTMGSINSAK 157

Query: 177 VSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVK 236
            +I ALD SD+GGREMRV+F+VDMN   RN   L S+P KN+ YESP+K+Y+GNLAW VK
Sbjct: 158 NAIAALDGSDIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLFYESPFKVYVGNLAWTVK 217

Query: 237 PEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIV 296
           PE+LR+ FS+FGTVVSA++L DR+AGK+R YGFLSFSS  ERDAA+S NG +F+ R L+V
Sbjct: 218 PEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAALSFNGKDFRGRILVV 277

Query: 297 KEGLERNE 304
           ++G+ER +
Sbjct: 278 RKGVERED 281

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BLAST of CmoCh08G001610 vs. TrEMBL
Match: A0A067H6R2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022096mg PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 7.0e-78
Identity = 156/274 (56.93%), Postives = 200/274 (72.99%), Query Frame = 1


Query: 35  SLPSSIHFDHWKLSRLVFVAPPMPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITA 94
           SLP+ I+F + KLS                SC  R     H A F  +  V+D+EA +  
Sbjct: 31  SLPTLINFQYPKLS----------------SCWSR----SHPAGFRSVLAVVDEEAVVVE 90

Query: 95  EVIEED----GVKSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAE 154
           + I       G + +D  S +E ++ ARPCELYVCNLPRS DI+EL+EMFKPFGTVL+ E
Sbjct: 91  DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 150

Query: 155 VSRNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLH 214
           VSRNPETGIS+GCGY+TMGSINSAK +I ALD SDVGGREMRVRF++DMN + RN   L 
Sbjct: 151 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 210

Query: 215 SSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLS 274
           S P+K  +YESP+K+Y+GNL+W VKPEDLRN F +FGTVVSA++L+DR+   +R++GF+S
Sbjct: 211 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 270

Query: 275 FSSAAERDAAISLNGTEFKNRKLIVKEGLERNES 305
           FSS AERDAA+SLNGT+F+ R +IV+EG++R ES
Sbjct: 271 FSSDAERDAALSLNGTDFRGRTIIVREGVDRTES 284

[Close]

BLAST of CmoCh08G001610 vs. TrEMBL
Match: V4U1N6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021531mg PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 7.0e-78
Identity = 156/274 (56.93%), Postives = 200/274 (72.99%), Query Frame = 1


Query: 35  SLPSSIHFDHWKLSRLVFVAPPMPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITA 94
           SLP+ I+F + KLS                SC  R     H A F  +  V+D+EA +  
Sbjct: 31  SLPTLINFQYPKLS----------------SCWSR----SHPAGFRSVLAVVDEEAVVVE 90

Query: 95  EVIEED----GVKSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAE 154
           + I       G + +D  S +E ++ ARPCELYVCNLPRS DI+EL+EMFKPFGTVL+ E
Sbjct: 91  DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 150

Query: 155 VSRNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLH 214
           VSRNPETGIS+GCGY+TMGSINSAK +I ALD SDVGGREMRVRF++DMN + RN   L 
Sbjct: 151 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 210

Query: 215 SSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLS 274
           S P+K  +YESP+K+Y+GNL+W VKPEDLRN F +FGTVVSA++L+DR+   +R++GF+S
Sbjct: 211 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 270

Query: 275 FSSAAERDAAISLNGTEFKNRKLIVKEGLERNES 305
           FSS AERDAA+SLNGT+F+ R +IV+EG++R ES
Sbjct: 271 FSSDAERDAALSLNGTDFRGRTIIVREGVDRTES 284

[Close]

BLAST of CmoCh08G001610 vs. TrEMBL
Match: F6I2Y3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02560 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 4.0e-73
Identity = 163/301 (54.15%), Postives = 199/301 (66.11%), Query Frame = 1


Query: 4   AASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCVSSS 63
           +AS LSSSS  SSS IL +            SLPSSIHF H KLS          C  S 
Sbjct: 3   SASLLSSSS--SSSSILCKSTPTAPKRYVSSSLPSSIHFAHPKLS----------CSISI 62

Query: 64  SSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPCELY 123
           S    RF                      T   +  + + ++DS S QE K+  RPCELY
Sbjct: 63  SLSRTRFS---------------------TVVAVAAEDINTDDS-SPQESKSSVRPCELY 122

Query: 124 VCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDC 183
           VCNLPRSC I+EL+ MFKP GTV + EV RN ETG+S+G GYVTM S+  AK +I ALD 
Sbjct: 123 VCNLPRSCGISELLSMFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDG 182

Query: 184 SDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLF 243
           SDVGGREMRVRF+ DMN + RN   L+S+P +N+I+ESPYK+Y+GNLAW +KPEDLRN F
Sbjct: 183 SDVGGREMRVRFSTDMNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHF 242

Query: 244 SQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLERNE 303
           SQFGTVVSA++++DR+AGK R YGFLSFSSAAE +AA+SLNG EF+ R L+V  G++R E
Sbjct: 243 SQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAMSLNGKEFRGRSLVVSAGMKRVE 269

Query: 304 S 305
           S
Sbjct: 303 S 269

[Close]

BLAST of CmoCh08G001610 vs. TAIR10
Match: AT1G01080.2 (AT1G01080.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 263.1 bits (671), Expect = 2.2e-70
Identity = 157/313 (50.16%), Postives = 213/313 (68.05%), Query Frame = 1


Query: 4   AASC----LSSSSLSSSSRILGQK-FHNCFPLKQLHSLP----SSIHFDHWKLSRLVFVA 63
           AASC    LSSSS SS + I   K   +      L SL     SS  F H  LSR  FVA
Sbjct: 2   AASCFAIPLSSSSRSSHNAIPKYKTLISSSSYSYLESLKLQFSSSNSFHHSSLSR-PFVA 61

Query: 64  PPMPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSV-SNQEV 123
            P+    SSS  S                 VLD+E     EV++ +   ++DSV S  E 
Sbjct: 62  QPLQIKVSSSELS-----------------VLDEEKE--EEVVKGEAEPNKDSVVSKAEP 121

Query: 124 KNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEV-SRNPETGISKGCGYVTMGSIN 183
               RPCELYVCN+PRS DIA+L++MF+PFGTV++ EV SRNP+TG S+G GYVTMGSIN
Sbjct: 122 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSIN 181

Query: 184 SAKVSITALDCSDVGGREMRVRFAVDMNP-KMRNRNNLHSSPRKNIIYESPYKIYIGNLA 243
           SAK++I +LD ++VGGREMRVR++VDMNP   RN   L+S+P+K ++YES +K+Y+GNL 
Sbjct: 182 SAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLP 241

Query: 244 WDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNR 303
           W  +P+ LRN FS+FGT+VS ++L+DR+ G++R++ FLSF+S  ERDAA+S NGT+++ R
Sbjct: 242 WFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGR 294

Query: 304 KLIVKEGLERNES 305
           ++IV+EG+E++ES
Sbjct: 302 RIIVREGIEKSES 294

[Close]

BLAST of CmoCh08G001610 vs. TAIR10
Match: AT3G52380.1 (AT3G52380.1 chloroplast RNA-binding protein 33)

HSP 1 Score: 116.7 bits (291), Expect = 2.5e-26
Identity = 73/220 (33.18%), Postives = 120/220 (54.55%), Query Frame = 1


Query: 95  EVIEEDGVKSEDSVSNQEVKNLARPCE--LYVCNLPRSCDIAELVEMFKPFGTVLAAEVS 154
           E +EE+G + E+ V  ++    A   E  LYV NLP +   +EL ++F   GTV+  ++ 
Sbjct: 89  EEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIV 148

Query: 155 RNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFA--------VDMNPKMR 214
            +  T  S+G G+VTMGSI  AK ++   + S +GGR ++V F           M  K+R
Sbjct: 149 YDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIR 208

Query: 215 NRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSR 274
           + N  +         +SP+K+Y GNL W++  + L++ F     V+ AK++ +R  G+SR
Sbjct: 209 DNNRSY--------VDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSR 268

Query: 275 LYGFLSFSSAAERDAAI-SLNGTEFKNRKLIVKEGLERNE 304
            +GF+SF SA    +A+ ++NG E + R L +    ER +
Sbjct: 269 GFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300

[Close]

BLAST of CmoCh08G001610 vs. TAIR10
Match: AT1G60000.1 (AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-25
Identity = 86/275 (31.27%), Postives = 134/275 (48.73%), Query Frame = 1


Query: 26  NCFPLKQLHSLPSSIHFDHWKLSRLVF---VAPPMPCVSSSSSCSPRFLRHKHGARFPVI 85
           +CF   + H  P+ +H  ++  ++ +     + P P + SS SCS RF            
Sbjct: 9   SCF---KSHHQPNLLHGCNYSSNQTLLRFNFSTPKPLLISSRSCSRRF------------ 68

Query: 86  FTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKP 145
             VL +   +  E  E+D     D  S       A   +LY  NLP + D A L ++ + 
Sbjct: 69  -RVLSETITVKLEEEEKD-----DGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQD 128

Query: 146 FGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPK 205
           F      EV  N +TG S+G  +VTM ++    + I  LD ++  GR ++V FA    PK
Sbjct: 129 FANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFAD--KPK 188

Query: 206 MRNRNNLHSSPRKNIIY-ESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAG 265
                     P K  +Y E+ +K+++GNL+W V  E L   F + G VV A+++ D   G
Sbjct: 189 ----------PNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTG 248

Query: 266 KSRLYGFLSFSSAAERDAAI-SLNGTEFKNRKLIV 296
           +SR YGF+ +SS AE + A+ SL+G E + R + V
Sbjct: 249 RSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250

[Close]

BLAST of CmoCh08G001610 vs. TAIR10
Match: AT4G24770.1 (AT4G24770.1 31-kDa RNA binding protein)

HSP 1 Score: 111.7 bits (278), Expect = 8.0e-25
Identity = 74/217 (34.10%), Postives = 113/217 (52.07%), Query Frame = 1


Query: 87  DQEAAITAEVIEEDGVKSEDSVSNQ-EVKNLARPCELYVCNLPRSCDIAELVEMFKPFGT 146
           D      +E  E +G  SE +VS + E    +   +L+V NL    +   L  +F+  GT
Sbjct: 116 DASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGT 175

Query: 147 VLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRN 206
           V  AEV  N ET  S+G G+VTM S++ A+ ++   +  D+ GR + V  A     +   
Sbjct: 176 VEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER 235

Query: 207 RNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRL 266
                 +PR   +YE  +++Y+GNL WDV    L  LFS+ G VV A+++ DR  G+SR 
Sbjct: 236 ------APR---VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRG 295

Query: 267 YGFLSFSSAAERDAAIS-LNGTEFKNRKLIVKEGLER 302
           +GF++ S   E + AIS L+G   + R + V    ER
Sbjct: 296 FGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323

[Close]

BLAST of CmoCh08G001610 vs. TAIR10
Match: AT5G50250.1 (AT5G50250.1 chloroplast RNA-binding protein 31B)

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-24
Identity = 90/304 (29.61%), Postives = 148/304 (48.68%), Query Frame = 1


Query: 8   LSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCVSSSSSCS 67
           ++SS L+ S ++L     +      L  +PS  +    +  R  F     P V+ + S  
Sbjct: 1   MTSSVLTPSLKLLAMTNSSS---STLFCIPSIFNISSSESHRFNFSLSSRP-VNLTLSLK 60

Query: 68  PRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDG------VKSEDSVSNQEVKNLARPCE 127
            + LR+      PV+ T + Q +    E   EDG      V  ++S  +++      P E
Sbjct: 61  SKTLRNSS----PVV-TFVSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPE 120

Query: 128 ---LYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI 187
              L+V NLP   D   L  +F+  GTV  +EV  N +T  S+G G+VTM ++  A+ ++
Sbjct: 121 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 180

Query: 188 TALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPED 247
              +  +V GR + V  A     +   +      PR   +Y++ ++IY+GNL WDV    
Sbjct: 181 EKFNSFEVNGRRLTVNRAAPRGSRPERQ------PR---VYDAAFRIYVGNLPWDVDSGR 240

Query: 248 LRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAI-SLNGTEFKNRKLIVKE 302
           L  LFS+ G VV A++++DR  G+SR +GF+  S+  E + AI +L+G   + R + V  
Sbjct: 241 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNV 286

[Close]

BLAST of CmoCh08G001610 vs. NCBI nr
Match: gi|659119739|ref|XP_008459818.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 424.5 bits (1090), Expect = 1.6e-115
Identity = 225/305 (73.77%), Postives = 246/305 (80.66%), Query Frame = 1


Query: 1   MANAASCLSSSSLSSSSR-ILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPC 60
           MAN A+ L+ SS SS S  IL  K  N    KQLHS PSS HFD+ KL  L         
Sbjct: 1   MANLATSLTFSSSSSPSLWILKHKSPNYCTFKQLHSFPSSFHFDYTKLVSL--------- 60

Query: 61  VSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARP 120
                       RH HG RFPV+FTVLD E+A+T E I E  VKSE SVSNQEVK LARP
Sbjct: 61  ------------RHNHGERFPVLFTVLDNESALTEEAIVEGDVKSESSVSNQEVKKLARP 120

Query: 121 CELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIT 180
           CELYVCNLPRSCDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI 
Sbjct: 121 CELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIA 180

Query: 181 ALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDL 240
           ALD SDVGGREMRVRFAVDMNPK RN NNL+SSP+KNIIYESPYK+Y+GNL+WDV+P DL
Sbjct: 181 ALDGSDVGGREMRVRFAVDMNPKNRNLNNLNSSPKKNIIYESPYKVYVGNLSWDVQPGDL 240

Query: 241 RNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGL 300
           RNLFS+FGTVVSAK+LNDRRAGKSR+YGFLSFSSAAERDA+ISL+GTEF  RKL+V+EG 
Sbjct: 241 RNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEFNKRKLVVREGF 284

Query: 301 ERNES 305
           ER+ES
Sbjct: 301 ERSES 284

[Close]

BLAST of CmoCh08G001610 vs. NCBI nr
Match: gi|449445537|ref|XP_004140529.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus])

HSP 1 Score: 423.3 bits (1087), Expect = 3.5e-115
Identity = 226/307 (73.62%), Postives = 247/307 (80.46%), Query Frame = 1


Query: 1   MANAASCL---SSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPM 60
           MAN A+ L   SSSS S S  IL  K  +    KQLHS  SS HFD+ KL  L       
Sbjct: 1   MANLATSLTFSSSSSPSPSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSL------- 60

Query: 61  PCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLA 120
                         RH HG RFPV+FTVLD E+A+T E I E  VKSE S+SNQEVK LA
Sbjct: 61  --------------RHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLA 120

Query: 121 RPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS 180
           RPCELYVCNLPRSCDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS
Sbjct: 121 RPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS 180

Query: 181 ITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPE 240
           ITALD SDVGGREMRVRFAVDMN K RN NNLHSSP+KNIIYESPYK+Y+GNL+WDVKP 
Sbjct: 181 ITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPG 240

Query: 241 DLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKE 300
           DLRNLFS+FGTVVSAK+LNDRRAGKSR+YGFLSFSSAAERDA+ISL+GTE+ NRKL+V+E
Sbjct: 241 DLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVRE 286

Query: 301 GLERNES 305
           GLER+ES
Sbjct: 301 GLERSES 286

[Close]

BLAST of CmoCh08G001610 vs. NCBI nr
Match: gi|255548039|ref|XP_002515076.1| (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Ricinus communis])

HSP 1 Score: 300.1 bits (767), Expect = 4.5e-78
Identity = 149/248 (60.08%), Postives = 193/248 (77.82%), Query Frame = 1


Query: 57  MPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVI-EEDGVKSEDSVSNQEVKN 116
           +P +SSSSS  P         R   I  ++++E+ +  EV  EE+  +SE+    +++K 
Sbjct: 38  IPLLSSSSSLWPA----NKSKRVFAILALVNEESVVAEEVDREENENESEEDELGRQLKK 97

Query: 117 LARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAK 176
             RPCELYVCNLPRSCDIAELVE+FKP+GTV++ EVSRNPETGIS+GCG+VTMGSINSAK
Sbjct: 98  QPRPCELYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGISRGCGFVTMGSINSAK 157

Query: 177 VSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVK 236
            +I ALD SD+GGREMRV+F+VDMN   RN   L S+P KN+ YESP+K+Y+GNLAW VK
Sbjct: 158 NAIAALDGSDIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLFYESPFKVYVGNLAWTVK 217

Query: 237 PEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIV 296
           PE+LR+ FS+FGTVVSA++L DR+AGK+R YGFLSFSS  ERDAA+S NG +F+ R L+V
Sbjct: 218 PEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAALSFNGKDFRGRILVV 277

Query: 297 KEGLERNE 304
           ++G+ER +
Sbjct: 278 RKGVERED 281

[Close]

BLAST of CmoCh08G001610 vs. NCBI nr
Match: gi|567904474|ref|XP_006444725.1| (hypothetical protein CICLE_v10021531mg [Citrus clementina])

HSP 1 Score: 298.9 bits (764), Expect = 1.0e-77
Identity = 156/274 (56.93%), Postives = 200/274 (72.99%), Query Frame = 1


Query: 35  SLPSSIHFDHWKLSRLVFVAPPMPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITA 94
           SLP+ I+F + KLS                SC  R     H A F  +  V+D+EA +  
Sbjct: 31  SLPTLINFQYPKLS----------------SCWSR----SHPAGFRSVLAVVDEEAVVVE 90

Query: 95  EVIEED----GVKSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAE 154
           + I       G + +D  S +E ++ ARPCELYVCNLPRS DI+EL+EMFKPFGTVL+ E
Sbjct: 91  DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 150

Query: 155 VSRNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLH 214
           VSRNPETGIS+GCGY+TMGSINSAK +I ALD SDVGGREMRVRF++DMN + RN   L 
Sbjct: 151 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 210

Query: 215 SSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLS 274
           S P+K  +YESP+K+Y+GNL+W VKPEDLRN F +FGTVVSA++L+DR+   +R++GF+S
Sbjct: 211 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 270

Query: 275 FSSAAERDAAISLNGTEFKNRKLIVKEGLERNES 305
           FSS AERDAA+SLNGT+F+ R +IV+EG++R ES
Sbjct: 271 FSSDAERDAALSLNGTDFRGRTIIVREGVDRTES 284

[Close]

BLAST of CmoCh08G001610 vs. NCBI nr
Match: gi|731420768|ref|XP_010661497.1| (PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic isoform X2 [Vitis vinifera])

HSP 1 Score: 283.1 bits (723), Expect = 5.7e-73
Identity = 163/301 (54.15%), Postives = 199/301 (66.11%), Query Frame = 1


Query: 4   AASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCVSSS 63
           +AS LSSSS  SSS IL +            SLPSSIHF H KLS          C  S 
Sbjct: 3   SASLLSSSS--SSSSILCKSTPTAPKRYVSSSLPSSIHFAHPKLS----------CSISI 62

Query: 64  SSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPCELY 123
           S    RF                      T   +  + + ++DS S QE K+  RPCELY
Sbjct: 63  SLSRTRFS---------------------TVVAVAAEDINTDDS-SPQESKSSVRPCELY 122

Query: 124 VCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDC 183
           VCNLPRSC I+EL+ MFKP GTV + EV RN ETG+S+G GYVTM S+  AK +I ALD 
Sbjct: 123 VCNLPRSCGISELLSMFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDG 182

Query: 184 SDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLF 243
           SDVGGREMRVRF+ DMN + RN   L+S+P +N+I+ESPYK+Y+GNLAW +KPEDLRN F
Sbjct: 183 SDVGGREMRVRFSTDMNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHF 242

Query: 244 SQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLERNE 303
           SQFGTVVSA++++DR+AGK R YGFLSFSSAAE +AA+SLNG EF+ R L+V  G++R E
Sbjct: 243 SQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAMSLNGKEFRGRSLVVSAGMKRVE 269

Query: 304 S 305
           S
Sbjct: 303 S 269

The following BLAST results are available for this feature:

BLAST of CmoCh08G001610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ROC1_NICSY	5.2e-26	33.00	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1	[more]
CP33_ARATH	4.4e-25	33.18	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=...	[more]
ROC3_NICSY	5.8e-25	30.38	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1	[more]
ROC5_NICSY	1.7e-24	35.24	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1	[more]
CP31A_ARATH	1.4e-23	34.10	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV...	[more]

BLAST of CmoCh08G001610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAH9_CUCSA	2.5e-115	73.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095890 PE=4 SV=1	[more]
B9RNK5_RICCO	3.1e-78	60.08	Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1339680 PE=...	[more]
A0A067H6R2_CITSI	7.0e-78	56.93	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022096mg PE=4 SV=1	[more]
V4U1N6_9ROSI	7.0e-78	56.93	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021531mg PE=4 SV=1	[more]
F6I2Y3_VITVI	4.0e-73	54.15	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02560 PE=4 SV=...	[more]

BLAST of CmoCh08G001610 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01080.2	2.2e-70	50.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	2.5e-26	33.18	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	2.1e-25	31.27	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G24770.1	8.0e-25	34.10	31-kDa RNA binding protein	[more]
AT5G50250.1	1.8e-24	29.61	chloroplast RNA-binding protein 31B	[more]

BLAST of CmoCh08G001610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119739\|ref\|XP_008459818.1\|	1.6e-115	73.77	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo]	[more]
gi\|449445537\|ref\|XP_004140529.1\|	3.5e-115	73.62	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus]	[more]
gi\|255548039\|ref\|XP_002515076.1\|	4.5e-78	60.08	PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Ricinus communis]	[more]
gi\|567904474\|ref\|XP_006444725.1\|	1.0e-77	56.93	hypothetical protein CICLE_v10021531mg [Citrus clementina]	[more]
gi\|731420768\|ref\|XP_010661497.1\|	5.7e-73	54.15	PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G001610.1	CmoCh08G001610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 225..293 score: 1.8E-18coord: 122..192 score: 3.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 224..296 score: 2.2E-22coord: 121..194 score: 1.0
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 120..198 score: 14.266coord: 223..300 score: 1
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 117..203 score: 2.5E-20coord: 209..301 score: 1.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 119..214 score: 1.29E-22coord: 216..302 score: 1.48
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 93..296 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G001610	CmaCh08G001600	Cucurbita maxima (Rimu)	cmacmoB913
CmoCh08G001610	Bhi12G002047	Wax gourd	cmowgoB1098
CmoCh08G001610	Carg04988	Silver-seed gourd	carcmoB0119

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G001610	Cucumber (Chinese Long) v3	cmocucB1043
CmoCh08G001610	Cucumber (Chinese Long) v3	cmocucB1065
CmoCh08G001610	Watermelon (97103) v2	cmowmbB899
CmoCh08G001610	Cucurbita moschata (Rifu)	cmocmoB313
CmoCh08G001610	Cucurbita maxima (Rimu)	cmacmoB368
CmoCh08G001610	Wild cucumber (PI 183967)	cmocpiB911
CmoCh08G001610	Cucumber (Chinese Long) v2	cmocuB897
CmoCh08G001610	Melon (DHL92) v3.5.1	cmomeB803
CmoCh08G001610	Watermelon (Charleston Gray)	cmowcgB802
CmoCh08G001610	Watermelon (97103) v1	cmowmB864
CmoCh08G001610	Cucurbita pepo (Zucchini)	cmocpeB836
CmoCh08G001610	Cucurbita pepo (Zucchini)	cmocpeB851
CmoCh08G001610	Bottle gourd (USVL1VR-Ls)	cmolsiB800
CmoCh08G001610	Cucumber (Gy14) v2	cgybcmoB430
CmoCh08G001610	Melon (DHL92) v3.6.1	cmomedB906