CmoCh08G001610.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTGAGACTGTGACAGAGGGGTTTGAGCTTCTTCATCTCCGCCATGGCGAACGCCGCTAGCTGCTTATCCTCCTCGTCGTTGTCTTCTTCCTCAAGGATCCTCGGGCAGAAATTTCATAATTGTTTTCCATTGAAACAGCTGCATTCTTTGCCTTCATCCATCCACTTTGACCACTGGAAACTCTCCCGCTTGGTTTTCGTTGCTCCTCCCATGCCATGTGTTTCTTCATCTTCTTCATGCTCTCCTCGTTTCTTGAGGCATAAACACGGGGCTAGATTTCCAGTGATTTTCACTGTTCTTGATCAGGAAGCTGCGATAACAGCAGAGGTAATCGAGGAAGACGGTGTTAAGAGCGAAGACAGCGTTTCGAATCAGGAAGTGAAAAATCTGGCACGGCCTTGTGAGCTCTACGTGTGTAATTTACCGAGGAGTTGCGACATTGCAGAGTTGGTTGAGATGTTTAAACCGTTTGGTACAGTCTTGGCTGCTGAGGTAGTTTTATTTCCAAGTAATGCTTCATCGTCTGTTCTTTCGTTTTAGATTTCCAGAATGCTCTATTTGCTTCTATTTCTCTTTGGAACTTCCGTAAACAATTAGTTTAAGATCATGCTAATTGGAATCCGGAAAGCATTTTTTTTGAATTTTGATGCTTAACAAATTCAATGTACCCGAAGGTAATCATGATTCTTTAAAGGCAGGCCTTAATTCTCTTATCTGTCTGGAGTAACATTGAATGAGTTCAAGCAGTGATTATGTTTCTTTTCATGTTTTGAATGCCATTTTTTATTGATCTCTCTGTATTTTGGACCAGGTCTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGCTATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTACGGCATTAGATTGTTCTGTTAGTGTCAAATCAATTATAAGTTGTCTTAATGTTAGCCCGTTCAGTATGATTGAATGATGAATTTTATTGTCTTGAAGGATGTTGGTGGACGAGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAATGAGAAATCGCAATAACCTGCATTCATCACCCAGGAAGAACATAATTTATGAAAGTCCTTACAAAATCTATATTGGGAATCTTGCTTGGGATGTCAAACCTGAAGATCTGAGGAACCTTTTTAGCCAATTTGGAACTGTAGTCAGTGCAAAAATTTTGAATGATCGTAGAGCTGGGAAGAGTCGTCTTTACGGTTTTCTTTCTTTCTCTTCAGCTGCAGAGCGTGATGCAGCAATTTCTTTGAATGGAACAGTAAAATTCTATATCTGAATCTCTTGGAATTTGAATTTTGCATTCCATTTTTGTTTATCTTTGACCCTTTTTCATTCTTTCATGTAGGAGTTCAAGAACAGGAAACTCATTGTTAAAGAGGGTTTGGAAAGGAACGAGTCTTGACTGCAGCCCTTCTTCTTGAACAAGTAAAAGAAGAAATCTCATCTTGTTTAAATGTTCTTAATCAGTTACAAGTTTGATTTTTAGCTAAATTATTAGAAGGATCAAGTTACCTATCCTTGTGAGATCTGCATTGAGAATCTTACAAAGTTTTGCTTTGAGGGTATTAGAATCTTTGATAAGGAATACTCTAAACTGATCTTGATTTACTTAGCCTTTCTACTGGGAAGCACATATCTAAGGGTTTGCTTTGACACAGCACTACTAAGGTTTTCAAGGTTATAGGAACTTAGAACACCTGATTGGAAGAATGTTGTATCAGTAACTGTCATTAGCTAATGGGATTACGCTTGATGCTCTCGACCTATCATCGCTTCCTTCCTCTACTAGTTCTAGAGTCCAGTAGCATTTTACAACTTTGATATATAGGTCGATCACGGATTCAAGGTATAGCAAACTGGGAAGCACATATCTAAGGGTTTGCTTTGACACAGCACTACTAAGGTTTTCAAGGTTATAGGAACTTAAAACACCTGATTGGAAGAATGTTGTATCGGTGACTGTCATTAGCTAACGGGATTACGCTTAATGCTCTCGACCTATCATCACTTCCTTCCTCTACTAGTTCTAGAGTCCAGTAGCATTTTACAACTTTGGTATATAGGTCGATCACGGATTCAAGGTATAGCAAACAAGACAACTAGTCGATCCGTGACTGAGGTGCAAAGACAAAGGAATGTGGTGGGTATAAGGAGTATAACAAGCAAGAAAAGGAATGCAGGCGCTGGTAAGCGTAGAAGGGCTAGAAAGCGAAGTTAAGGTCGGTAGGCAAGCGGGTTTGGGAACGAATCCTGTTCACACGCAAACTCTTCCTGAGACTCGGTAGTTGACCTATGAGATTAAGCAAAGTTCTGATCTCGAACCTCCTTTTCCTTTACCATCATGTTCGTATGAGCAGTAGATGTATTAGATTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGATGATCAAGATTTACAATGACAATGTGTGATTCATTTATGTAAGTTTAGAAATTTTATTGATATAAGTTAATGTTTTCACCTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGGTGATCAAGATTTACAATGACAATGTGTGATTCATTTATGTAAGTTTAGAAATTTTATTGATATAAGTTAATGTTTTCACCTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGATGATCAAGATTTAC ACTGAGACTGTGACAGAGGGGTTTGAGCTTCTTCATCTCCGCCATGGCGAACGCCGCTAGCTGCTTATCCTCCTCGTCGTTGTCTTCTTCCTCAAGGATCCTCGGGCAGAAATTTCATAATTGTTTTCCATTGAAACAGCTGCATTCTTTGCCTTCATCCATCCACTTTGACCACTGGAAACTCTCCCGCTTGGTTTTCGTTGCTCCTCCCATGCCATGTGTTTCTTCATCTTCTTCATGCTCTCCTCGTTTCTTGAGGCATAAACACGGGGCTAGATTTCCAGTGATTTTCACTGTTCTTGATCAGGAAGCTGCGATAACAGCAGAGGTAATCGAGGAAGACGGTGTTAAGAGCGAAGACAGCGTTTCGAATCAGGAAGTGAAAAATCTGGCACGGCCTTGTGAGCTCTACGTGTGTAATTTACCGAGGAGTTGCGACATTGCAGAGTTGGTTGAGATGTTTAAACCGTTTGGTACAGTCTTGGCTGCTGAGGTCTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGCTATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTACGGCATTAGATTGTTCTGATGTTGGTGGACGAGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAATGAGAAATCGCAATAACCTGCATTCATCACCCAGGAAGAACATAATTTATGAAAGTCCTTACAAAATCTATATTGGGAATCTTGCTTGGGATGTCAAACCTGAAGATCTGAGGAACCTTTTTAGCCAATTTGGAACTGTAGTCAGTGCAAAAATTTTGAATGATCGTAGAGCTGGGAAGAGTCGTCTTTACGGTTTTCTTTCTTTCTCTTCAGCTGCAGAGCGTGATGCAGCAATTTCTTTGAATGGAACAGAGTTCAAGAACAGGAAACTCATTGTTAAAGAGGGTTTGGAAAGGAACGAGTCTTGACTGCAGCCCTTCTTCTTGAACAAGTAAAAGAAGAAATCTCATCTTGTTTAAATGTTCTTAATCAGTTACAAGTTTGATTTTTAGCTAAATTATTAGAAGGATCAAGTTACCTATCCTTGTGAGATCTGCATTGAGAATCTTACAAAGTTTTGCTTTGAGGGTATTAGAATCTTTGATAAGGAATACTCTAAACTGATCTTGATTTACTTAGCCTTTCTACTGGGAAGCACATATCTAAGGGTTTGCTTTGACACAGCACTACTAAGGTTTTCAAGGTTATAGGAACTTAGAACACCTGATTGGAAGAATGTTGTATCAGTAACTGTCATTAGCTAATGGGATTACGCTTGATGCTCTCGACCTATCATCGCTTCCTTCCTCTACTAGTTCTAGAGTCCAGTAGCATTTTACAACTTTGATATATAGGTCGATCACGGATTCAAGGTATAGCAAACTGGGAAGCACATATCTAAGGGTTTGCTTTGACACAGCACTACTAAGGTTTTCAAGGTTATAGGAACTTAAAACACCTGATTGGAAGAATGTTGTATCGGTGACTGTCATTAGCTAACGGGATTACGCTTAATGCTCTCGACCTATCATCACTTCCTTCCTCTACTAGTTCTAGAGTCCAGTAGCATTTTACAACTTTGGTATATAGGTCGATCACGGATTCAAGGTATAGCAAACAAGACAACTAGTCGATCCGTGACTGAGGTGCAAAGACAAAGGAATGTGGTGGGTATAAGGAGTATAACAAGCAAGAAAAGGAATGCAGGCGCTGGTAAGCGTAGAAGGGCTAGAAAGCGAAGTTAAGGTCGGTAGGCAAGCGGGTTTGGGAACGAATCCTGTTCACACGCAAACTCTTCCTGAGACTCGGTAGTTGACCTATGAGATTAAGCAAAGTTCTGATCTCGAACCTCCTTTTCCTTTACCATCATGTTCGTATGAGCAGTAGATGTATTAGATTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGATGATCAAGATTTACAATGACAATGTGTGATTCATTTATGTAAGTTTAGAAATTTTATTGATATAAGTTAATGTTTTCACCTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGGTGATCAAGATTTACAATGACAATGTGTGATTCATTTATGTAAGTTTAGAAATTTTATTGATATAAGTTAATGTTTTCACCTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGATGATCAAGATTTAC ATGGCGAACGCCGCTAGCTGCTTATCCTCCTCGTCGTTGTCTTCTTCCTCAAGGATCCTCGGGCAGAAATTTCATAATTGTTTTCCATTGAAACAGCTGCATTCTTTGCCTTCATCCATCCACTTTGACCACTGGAAACTCTCCCGCTTGGTTTTCGTTGCTCCTCCCATGCCATGTGTTTCTTCATCTTCTTCATGCTCTCCTCGTTTCTTGAGGCATAAACACGGGGCTAGATTTCCAGTGATTTTCACTGTTCTTGATCAGGAAGCTGCGATAACAGCAGAGGTAATCGAGGAAGACGGTGTTAAGAGCGAAGACAGCGTTTCGAATCAGGAAGTGAAAAATCTGGCACGGCCTTGTGAGCTCTACGTGTGTAATTTACCGAGGAGTTGCGACATTGCAGAGTTGGTTGAGATGTTTAAACCGTTTGGTACAGTCTTGGCTGCTGAGGTCTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGCTATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTACGGCATTAGATTGTTCTGATGTTGGTGGACGAGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAATGAGAAATCGCAATAACCTGCATTCATCACCCAGGAAGAACATAATTTATGAAAGTCCTTACAAAATCTATATTGGGAATCTTGCTTGGGATGTCAAACCTGAAGATCTGAGGAACCTTTTTAGCCAATTTGGAACTGTAGTCAGTGCAAAAATTTTGAATGATCGTAGAGCTGGGAAGAGTCGTCTTTACGGTTTTCTTTCTTTCTCTTCAGCTGCAGAGCGTGATGCAGCAATTTCTTTGAATGGAACAGAGTTCAAGAACAGGAAACTCATTGTTAAAGAGGGTTTGGAAAGGAACGAGTCTTGA
BLAST of CmoCh08G001610.1 vs. Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 5.2e-26 Identity = 99/300 (33.00%), Postives = 149/300 (49.67%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. Swiss-Prot
Match: CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 4.4e-25 Identity = 73/220 (33.18%), Postives = 120/220 (54.55%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 5.8e-25 Identity = 79/260 (30.38%), Postives = 127/260 (48.85%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.7e-24 Identity = 74/210 (35.24%), Postives = 121/210 (57.62%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. Swiss-Prot
Match: CP31A_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.4e-23 Identity = 74/217 (34.10%), Postives = 113/217 (52.07%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. TrEMBL
Match: A0A0A0KAH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095890 PE=4 SV=1) HSP 1 Score: 423.3 bits (1087), Expect = 2.5e-115 Identity = 226/307 (73.62%), Postives = 247/307 (80.46%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. TrEMBL
Match: B9RNK5_RICCO (Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1339680 PE=4 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 3.1e-78 Identity = 149/248 (60.08%), Postives = 193/248 (77.82%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. TrEMBL
Match: A0A067H6R2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022096mg PE=4 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 7.0e-78 Identity = 156/274 (56.93%), Postives = 200/274 (72.99%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. TrEMBL
Match: V4U1N6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021531mg PE=4 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 7.0e-78 Identity = 156/274 (56.93%), Postives = 200/274 (72.99%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. TrEMBL
Match: F6I2Y3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02560 PE=4 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 4.0e-73 Identity = 163/301 (54.15%), Postives = 199/301 (66.11%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. TAIR10
Match: AT1G01080.2 (AT1G01080.2 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 263.1 bits (671), Expect = 2.2e-70 Identity = 157/313 (50.16%), Postives = 213/313 (68.05%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. TAIR10
Match: AT3G52380.1 (AT3G52380.1 chloroplast RNA-binding protein 33) HSP 1 Score: 116.7 bits (291), Expect = 2.5e-26 Identity = 73/220 (33.18%), Postives = 120/220 (54.55%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. TAIR10
Match: AT1G60000.1 (AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 113.6 bits (283), Expect = 2.1e-25 Identity = 86/275 (31.27%), Postives = 134/275 (48.73%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. TAIR10
Match: AT4G24770.1 (AT4G24770.1 31-kDa RNA binding protein) HSP 1 Score: 111.7 bits (278), Expect = 8.0e-25 Identity = 74/217 (34.10%), Postives = 113/217 (52.07%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. TAIR10
Match: AT5G50250.1 (AT5G50250.1 chloroplast RNA-binding protein 31B) HSP 1 Score: 110.5 bits (275), Expect = 1.8e-24 Identity = 90/304 (29.61%), Postives = 148/304 (48.68%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. NCBI nr
Match: gi|659119739|ref|XP_008459818.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo]) HSP 1 Score: 424.5 bits (1090), Expect = 1.6e-115 Identity = 225/305 (73.77%), Postives = 246/305 (80.66%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. NCBI nr
Match: gi|449445537|ref|XP_004140529.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus]) HSP 1 Score: 423.3 bits (1087), Expect = 3.5e-115 Identity = 226/307 (73.62%), Postives = 247/307 (80.46%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. NCBI nr
Match: gi|255548039|ref|XP_002515076.1| (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Ricinus communis]) HSP 1 Score: 300.1 bits (767), Expect = 4.5e-78 Identity = 149/248 (60.08%), Postives = 193/248 (77.82%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. NCBI nr
Match: gi|567904474|ref|XP_006444725.1| (hypothetical protein CICLE_v10021531mg [Citrus clementina]) HSP 1 Score: 298.9 bits (764), Expect = 1.0e-77 Identity = 156/274 (56.93%), Postives = 200/274 (72.99%), Query Frame = 1
BLAST of CmoCh08G001610.1 vs. NCBI nr
Match: gi|731420768|ref|XP_010661497.1| (PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic isoform X2 [Vitis vinifera]) HSP 1 Score: 283.1 bits (723), Expect = 5.7e-73 Identity = 163/301 (54.15%), Postives = 199/301 (66.11%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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