CmaCh08G001600 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G001600
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionChloroplast RNA-binding protein 33
LocationCma_Chr08 : 876765 .. 878237 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATATCTAATCCATCCGCCCAAAACTGAGACTGAGACAGAGGGGTTTGAGCTTCTTCATCTCGGCCATGGCGAACGCCGCTAGCTGCTTATCCTCCTCGTCGTTGTCTTTTTCCTCAAGGATCCTCGGGCAGAAATTTCATAATTGTTTTCCATTGAAACAACTGCATTCTTTGCCTTCATCCATCCACTTTAACCACTGGAAACTCTCCCGCTTGGTTTTCGTTGCTCCTCCCATGCCATGTGTTTCTTCATCTTCTTCATGCTCTCCTCGTTTCTTGAGGCATAAACACGGGGCTAGATTTCCAGTGCTTTTCACTGTTCTTGATCAGGAAGATGCGGTAACAGCAGAGGTAATCGAGGAAGACAATGTTAAGAGCGAAGACAGCGTTTCGAATCAGGAAGTGAAAAATCTGGCACGGCCTTGTGAGCTCTACGTGTGTAATTTACCGAGAAGTTGCGACATTGCAGAGCTGGTTGAGATGTTTAAACCGTTTGGTACAGTCTTGGCTGCTGAGGTAGTTTTATTTCCAAGTAATGCTTCATCGTCTGTTCTTTCGTTTTAGATTTCCAGAATGGTCTATTTGCTTCTATTTGTCTGTGGAACTTCCGTAAACAATTAGTTTAAGATCATGCTAATTGGAATCCGGAAAGCATTTTTTTGAATTTTTATGCTTAACAAATTCAATGTACCCGAAGGTAGGTAATCATGATTCTTTAAAGGCAGTCCTTAATTTTCTTATCTGTCTTGAGTAACATTGAATGAGTTCAAGCAGTGATTATGTTTCTTTTCATGTTTTGAATGGCATTTTTGATTGATCTCTCTGTATTTTGGACCAGGTCTCTCGGAATCCAGAGACAAGCATAAGCAAGGGATGTGGCTATGTCACAATGGGTTCAATCAACTCCGCTAAAGTTTCAATTACGGCATTAGATTGTTCTGTTAGTGTCAAATCAATTATAAGTTGTCTTAATGTTAGCCCGTTCAGTATGATTGAATGATGAATTTTATTTTCTTGAAGGATGTTGGTGGACGAGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAATGAGAAATCGCAACAACCTGCATTCATCACCCAGGAAGAACATAATTTATGAAAGTCCTTACAAAATCTATATTGGGAATCTTGCTTGGGATGTCAAACCTGAAGATCTGAGGAACCTTTTTAGCCAATTTGGAACTGTAGTCAGTGCAAAAATTTTGAATGATCGTCGAGCTGGGAAGAGTCGTCTTTACGGTTTTCTTTCTTTTTCTTCAGCTGCAGAGCGTGATGCAGCAATTTCTTTGAATGGAACAGTAAAATTCTATATCTGAATCCCTTGGAATTTGAATTTTGCATTCCATTTTGTTTATCTTTGACCCTTATTCATTCTTTCATGTAGGAGTTCAAGAACAGGAAACTCATTGTTAAAGAGGGTTTGGAAAGGAACAACGAGTCTTGA

mRNA sequence

CCATATCTAATCCATCCGCCCAAAACTGAGACTGAGACAGAGGGGTTTGAGCTTCTTCATCTCGGCCATGGCGAACGCCGCTAGCTGCTTATCCTCCTCGTCGTTGTCTTTTTCCTCAAGGATCCTCGGGCAGAAATTTCATAATTGTTTTCCATTGAAACAACTGCATTCTTTGCCTTCATCCATCCACTTTAACCACTGGAAACTCTCCCGCTTGGTTTTCGTTGCTCCTCCCATGCCATGTGTTTCTTCATCTTCTTCATGCTCTCCTCGTTTCTTGAGGCATAAACACGGGGCTAGATTTCCAGTGCTTTTCACTGTTCTTGATCAGGAAGATGCGGTAACAGCAGAGGTAATCGAGGAAGACAATGTTAAGAGCGAAGACAGCGTTTCGAATCAGGAAGTGAAAAATCTGGCACGGCCTTGTGAGCTCTACGTGTGTAATTTACCGAGAAGTTGCGACATTGCAGAGCTGGTTGAGATGTTTAAACCGTTTGGTACAGTCTTGGCTGCTGAGGTCTCTCGGAATCCAGAGACAAGCATAAGCAAGGGATGTGGCTATGTCACAATGGGTTCAATCAACTCCGCTAAAGTTTCAATTACGGCATTAGATTGTTCTGATGTTGGTGGACGAGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAATGAGAAATCGCAACAACCTGCATTCATCACCCAGGAAGAACATAATTTATGAAAGTCCTTACAAAATCTATATTGGGAATCTTGCTTGGGATGTCAAACCTGAAGATCTGAGGAACCTTTTTAGCCAATTTGGAACTGTAGTCAGTGCAAAAATTTTGAATGATCGTCGAGCTGGGAAGAGTCGTCTTTACGGTTTTCTTTCTTTTTCTTCAGCTGCAGAGCGTGATGCAGCAATTTCTTTGAATGGAACAGAGTTCAAGAACAGGAAACTCATTGTTAAAGAGGGTTTGGAAAGGAACAACGAGTCTTGA

Coding sequence (CDS)

ATGGCGAACGCCGCTAGCTGCTTATCCTCCTCGTCGTTGTCTTTTTCCTCAAGGATCCTCGGGCAGAAATTTCATAATTGTTTTCCATTGAAACAACTGCATTCTTTGCCTTCATCCATCCACTTTAACCACTGGAAACTCTCCCGCTTGGTTTTCGTTGCTCCTCCCATGCCATGTGTTTCTTCATCTTCTTCATGCTCTCCTCGTTTCTTGAGGCATAAACACGGGGCTAGATTTCCAGTGCTTTTCACTGTTCTTGATCAGGAAGATGCGGTAACAGCAGAGGTAATCGAGGAAGACAATGTTAAGAGCGAAGACAGCGTTTCGAATCAGGAAGTGAAAAATCTGGCACGGCCTTGTGAGCTCTACGTGTGTAATTTACCGAGAAGTTGCGACATTGCAGAGCTGGTTGAGATGTTTAAACCGTTTGGTACAGTCTTGGCTGCTGAGGTCTCTCGGAATCCAGAGACAAGCATAAGCAAGGGATGTGGCTATGTCACAATGGGTTCAATCAACTCCGCTAAAGTTTCAATTACGGCATTAGATTGTTCTGATGTTGGTGGACGAGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAATGAGAAATCGCAACAACCTGCATTCATCACCCAGGAAGAACATAATTTATGAAAGTCCTTACAAAATCTATATTGGGAATCTTGCTTGGGATGTCAAACCTGAAGATCTGAGGAACCTTTTTAGCCAATTTGGAACTGTAGTCAGTGCAAAAATTTTGAATGATCGTCGAGCTGGGAAGAGTCGTCTTTACGGTTTTCTTTCTTTTTCTTCAGCTGCAGAGCGTGATGCAGCAATTTCTTTGAATGGAACAGAGTTCAAGAACAGGAAACTCATTGTTAAAGAGGGTTTGGAAAGGAACAACGAGTCTTGA

Protein sequence

MANAASCLSSSSLSFSSRILGQKFHNCFPLKQLHSLPSSIHFNHWKLSRLVFVAPPMPCVSSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNVKSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETSISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLERNNES
Homology
[Close]
BLAST of CmaCh08G001600 vs. Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.0e-26
Identity = 95/292 (32.53%), Postives = 143/292 (48.97%), Query Frame = 1 

Query: 9   SSSSLSFSSRILGQKFHNCFPLKQLHSLPSSIHFNHWKLSRLVFVAPPMPC---VSSSSS 68
           S+SSL F S           PL +  S  +S+ F         F  PP      +SSSSS
Sbjct: 4   SASSLHFLSLT-----PQTLPLPKPTSQTTSLSF---------FSLPPSSLNLSLSSSSS 63

Query: 69  C-SPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNVKSEDSVSNQEVKNLARPCELYV 128
           C S RF+R    + F  +  V D +D V                  +E +N +   +++V
Sbjct: 64  CFSSRFVRKVTLSDFDQIEDVEDGDDGV------------------EEERNFSPDLKIFV 123

Query: 129 CNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETSISKGCGYVTMGSINSAKVSITALDCS 188
            NLP S D A L E+F+  G V   EV  +  T  S+G G+VTM S    + +    +  
Sbjct: 124 GNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 183

Query: 189 DVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFS 248
           ++ GR +RV       P+ R  ++     R    ++S  ++Y+GNLAW V  + L  LFS
Sbjct: 184 ELDGRALRVNSGPP--PEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFS 243

Query: 249 QFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAI-SLNGTEFKNRKLIV 296
           + G VV AK++ DR +G+SR +GF+++SSA E + AI SL+G +   R + V
Sbjct: 244 EQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261

[Close]
BLAST of CmaCh08G001600 vs. Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.5e-25
Identity = 80/263 (30.42%), Postives = 131/263 (49.81%), Query Frame = 1 

Query: 47  LSRLVFVAPPMPCVSSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNVKSED 106
           +S   F++  +  +S SSS       +K   +FP   +VL ++D     ++ +D  +  D
Sbjct: 20  ISSYPFLSTQLKPISLSSSLPTLLSLNKRTTQFPTFVSVLSEDDNT---LVLDDQEQGGD 79

Query: 107 SVS-------NQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETSI 166
             S        +E +  +   +L+V NLP   D   L ++F+  G V  AEV  N ET  
Sbjct: 80  FPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDR 139

Query: 167 SKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIY 226
           S+G G+VTM ++  A  ++      D+ GR + V  A     +         +PR    +
Sbjct: 140 SRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPER------APRT---F 199

Query: 227 ESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDA 286
           +  Y+IY+GN+ WD+    L  +FS+ G VVSA+++ DR +G+SR +GF++ SS AE   
Sbjct: 200 QPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSE 259

Query: 287 AI-SLNGTEFKNRKLIVKEGLER 302
           AI +L+G     R + V    ER
Sbjct: 260 AIANLDGQTLDGRTIRVNAAEER 270

[Close]
BLAST of CmaCh08G001600 vs. Swiss-Prot
Match: CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.4e-25
Identity = 74/229 (32.31%), Postives = 122/229 (53.28%), Query Frame = 1 

Query: 89  EDAVTAEVIEEDNVKSEDSVSNQEVKNLARPCE-------LYVCNLPRSCDIAELVEMFK 148
           +D + A V EE+ V+ E     +EV+   +  +       LYV NLP +   +EL ++F 
Sbjct: 78  DDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFG 137

Query: 149 PFGTVLAAEVSRNPETSISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFA----- 208
             GTV+  ++  +  T  S+G G+VTMGSI  AK ++   + S +GGR ++V F      
Sbjct: 138 EAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRG 197

Query: 209 ---VDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAK 268
                M  K+R+ N  +         +SP+K+Y GNL W++  + L++ F     V+ AK
Sbjct: 198 GENEVMRTKIRDNNRSY--------VDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAK 257

Query: 269 ILNDRRAGKSRLYGFLSFSSAAERDAAI-SLNGTEFKNRKLIVKEGLER 302
           ++ +R  G+SR +GF+SF SA    +A+ ++NG E + R L +    ER
Sbjct: 258 VIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASER 298

[Close]
BLAST of CmaCh08G001600 vs. Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.4e-24
Identity = 72/210 (34.29%), Postives = 118/210 (56.19%), Query Frame = 1 

Query: 87  DQEDAVTAEVIEEDNVKSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTV 146
           D+E+   +   EE+  + E+ V ++ V+       LYV NLP S   ++L E+F   GTV
Sbjct: 85  DEEEVALSAEEEEEIEEKEERVESESVEG----GRLYVGNLPFSMTSSQLSEIFAEAGTV 144

Query: 147 LAAEVSRNPETSISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNR 206
              E+  +  T  S+G  +VTMGS+  AK +I   D S VGGR ++V F     P+   R
Sbjct: 145 ANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNF--PEVPRGGER 204

Query: 207 NNLHSSPRKNI--IYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSR 266
             + +  R       +SP+K+Y+ NL+W +  + LR+ F+     +SAK++ DR +G+SR
Sbjct: 205 EVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSR 264

Query: 267 LYGFLSFSSAAERDAAI-SLNGTEFKNRKL 294
            +GF++FSSA   ++A+ ++N  E + R L
Sbjct: 265 GFGFITFSSAEAMNSALDTMNEVELEGRPL 288

[Close]
BLAST of CmaCh08G001600 vs. Swiss-Prot
Match: CP31B_ARATH (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.9e-23
Identity = 70/207 (33.82%), Postives = 112/207 (54.11%), Query Frame = 1 

Query: 96  VIEEDNVKSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNP 155
           V  +++ +SED V   E    A+   L+V NLP   D   L  +F+  GTV  +EV  N 
Sbjct: 92  VTVDESFESEDGVGFPEPPEEAK---LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNR 151

Query: 156 ETSISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRK 215
           +T  S+G G+VTM ++  A+ ++   +  +V GR + V  A     +   +      PR 
Sbjct: 152 DTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQ------PR- 211

Query: 216 NIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAA 275
             +Y++ ++IY+GNL WDV    L  LFS+ G VV A++++DR  G+SR +GF+  S+  
Sbjct: 212 --VYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNEN 271

Query: 276 ERDAAI-SLNGTEFKNRKLIVKEGLER 302
           E + AI +L+G   + R + V    ER
Sbjct: 272 EVNVAIAALDGQNLEGRAIKVNVAEER 286

[Close]
BLAST of CmaCh08G001600 vs. TrEMBL
Match: A0A0A0KAH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095890 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 8.8e-113
Identity = 223/305 (73.11%), Postives = 244/305 (80.00%), Query Frame = 1 

Query: 1   MANAASCL---SSSSLSFSSRILGQKFHNCFPLKQLHSLPSSIHFNHWKLSRLVFVAPPM 60
           MAN A+ L   SSSS S S  IL  K  +    KQLHS  SS HF++ KL  L       
Sbjct: 1   MANLATSLTFSSSSSPSPSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSL------- 60

Query: 61  PCVSSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNVKSEDSVSNQEVKNLA 120
                         RH HG RFPVLFTVLD E A+T E I E +VKSE S+SNQEVK LA
Sbjct: 61  --------------RHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLA 120

Query: 121 RPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETSISKGCGYVTMGSINSAKVS 180
           RPCELYVCNLPRSCDIAELVEMFKP+GTVLAAEVSRNPET ISKGCGYVTMGSINSAKVS
Sbjct: 121 RPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS 180

Query: 181 ITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPE 240
           ITALD SDVGGREMRVRFAVDMN K RN NNLHSSP+KNIIYESPYK+Y+GNL+WDVKP 
Sbjct: 181 ITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPG 240

Query: 241 DLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKE 300
           DLRNLFS+FGTVVSAK+LNDRRAGKSR+YGFLSFSSAAERDA+ISL+GTE+ NRKL+V+E
Sbjct: 241 DLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVRE 284

Query: 301 GLERN 303
           GLER+
Sbjct: 301 GLERS 284

[Close]
BLAST of CmaCh08G001600 vs. TrEMBL
Match: B9RNK5_RICCO (Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1339680 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.7e-77
Identity = 150/248 (60.48%), Postives = 194/248 (78.23%), Query Frame = 1 

Query: 57  MPCVSSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNV-KSEDSVSNQEVKN 116
           +P +SSSSS  P    +K    F +L  ++++E  V  EV  E+N  +SE+    +++K 
Sbjct: 38  IPLLSSSSSLWPA---NKSKRVFAIL-ALVNEESVVAEEVDREENENESEEDELGRQLKK 97

Query: 117 LARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETSISKGCGYVTMGSINSAK 176
             RPCELYVCNLPRSCDIAELVE+FKP+GTV++ EVSRNPET IS+GCG+VTMGSINSAK
Sbjct: 98  QPRPCELYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGISRGCGFVTMGSINSAK 157

Query: 177 VSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVK 236
            +I ALD SD+GGREMRV+F+VDMN   RN   L S+P KN+ YESP+K+Y+GNLAW VK
Sbjct: 158 NAIAALDGSDIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLFYESPFKVYVGNLAWTVK 217

Query: 237 PEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIV 296
           PE+LR+ FS+FGTVVSA++L DR+AGK+R YGFLSFSS  ERDAA+S NG +F+ R L+V
Sbjct: 218 PEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAALSFNGKDFRGRILVV 277

Query: 297 KEGLERNN 304
           ++G+ER +
Sbjct: 278 RKGVERED 281

[Close]
BLAST of CmaCh08G001600 vs. TrEMBL
Match: V4U1N6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021531mg PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 8.6e-76
Identity = 155/271 (57.20%), Postives = 199/271 (73.43%), Query Frame = 1 

Query: 35  SLPSSIHFNHWKLSRLVFVAPPMPCVSSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTA 94
           SLP+ I+F + KLS                SC  R     H A F  +  V+D+E  V  
Sbjct: 31  SLPTLINFQYPKLS----------------SCWSR----SHPAGFRSVLAVVDEEAVVVE 90

Query: 95  EVIE-EDNV---KSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAE 154
           + I  +DNV   + +D  S +E ++ ARPCELYVCNLPRS DI+EL+EMFKPFGTVL+ E
Sbjct: 91  DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 150

Query: 155 VSRNPETSISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLH 214
           VSRNPET IS+GCGY+TMGSINSAK +I ALD SDVGGREMRVRF++DMN + RN   L 
Sbjct: 151 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 210

Query: 215 SSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLS 274
           S P+K  +YESP+K+Y+GNL+W VKPEDLRN F +FGTVVSA++L+DR+   +R++GF+S
Sbjct: 211 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 270

Query: 275 FSSAAERDAAISLNGTEFKNRKLIVKEGLER 302
           FSS AERDAA+SLNGT+F+ R +IV+EG++R
Sbjct: 271 FSSDAERDAALSLNGTDFRGRTIIVREGVDR 281

[Close]
BLAST of CmaCh08G001600 vs. TrEMBL
Match: A0A067H6R2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022096mg PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 8.6e-76
Identity = 155/271 (57.20%), Postives = 199/271 (73.43%), Query Frame = 1 

Query: 35  SLPSSIHFNHWKLSRLVFVAPPMPCVSSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTA 94
           SLP+ I+F + KLS                SC  R     H A F  +  V+D+E  V  
Sbjct: 31  SLPTLINFQYPKLS----------------SCWSR----SHPAGFRSVLAVVDEEAVVVE 90

Query: 95  EVIE-EDNV---KSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAE 154
           + I  +DNV   + +D  S +E ++ ARPCELYVCNLPRS DI+EL+EMFKPFGTVL+ E
Sbjct: 91  DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 150

Query: 155 VSRNPETSISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLH 214
           VSRNPET IS+GCGY+TMGSINSAK +I ALD SDVGGREMRVRF++DMN + RN   L 
Sbjct: 151 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 210

Query: 215 SSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLS 274
           S P+K  +YESP+K+Y+GNL+W VKPEDLRN F +FGTVVSA++L+DR+   +R++GF+S
Sbjct: 211 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 270

Query: 275 FSSAAERDAAISLNGTEFKNRKLIVKEGLER 302
           FSS AERDAA+SLNGT+F+ R +IV+EG++R
Sbjct: 271 FSSDAERDAALSLNGTDFRGRTIIVREGVDR 281

[Close]
BLAST of CmaCh08G001600 vs. TrEMBL
Match: F6I2Y3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02560 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.7e-71
Identity = 159/298 (53.36%), Postives = 196/298 (65.77%), Query Frame = 1 

Query: 4   AASCLSSSSLSFSSRILGQKFHNCFPLKQLHSLPSSIHFNHWKLSRLVFVAPPMPCVSSS 63
           +AS LSSSS S  S IL +            SLPSSIHF H KLS          C  S 
Sbjct: 3   SASLLSSSSSS--SSILCKSTPTAPKRYVSSSLPSSIHFAHPKLS----------CSISI 62

Query: 64  SSCSPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNVKSEDSVSNQEVKNLARPCELY 123
           S    RF                      T   +  +++ ++DS S QE K+  RPCELY
Sbjct: 63  SLSRTRFS---------------------TVVAVAAEDINTDDS-SPQESKSSVRPCELY 122

Query: 124 VCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETSISKGCGYVTMGSINSAKVSITALDC 183
           VCNLPRSC I+EL+ MFKP GTV + EV RN ET +S+G GYVTM S+  AK +I ALD 
Sbjct: 123 VCNLPRSCGISELLSMFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDG 182

Query: 184 SDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLF 243
           SDVGGREMRVRF+ DMN + RN   L+S+P +N+I+ESPYK+Y+GNLAW +KPEDLRN F
Sbjct: 183 SDVGGREMRVRFSTDMNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHF 242

Query: 244 SQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLER 302
           SQFGTVVSA++++DR+AGK R YGFLSFSSAAE +AA+SLNG EF+ R L+V  G++R
Sbjct: 243 SQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAMSLNGKEFRGRSLVVSAGMKR 266

[Close]
BLAST of CmaCh08G001600 vs. TAIR10
Match: AT1G01080.2 (AT1G01080.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 254.2 bits (648), Expect = 1.0e-67
Identity = 153/311 (49.20%), Postives = 210/311 (67.52%), Query Frame = 1 

Query: 4   AASC----LSSSSLSFSSRILGQK-FHNCFPLKQLHSLP----SSIHFNHWKLSRLVFVA 63
           AASC    LSSSS S  + I   K   +      L SL     SS  F+H  LSR  FVA
Sbjct: 2   AASCFAIPLSSSSRSSHNAIPKYKTLISSSSYSYLESLKLQFSSSNSFHHSSLSR-PFVA 61

Query: 64  PPMPCVSSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNVKSEDSV-SNQEV 123
            P+    SSS  S                 VLD+E     EV++ +   ++DSV S  E 
Sbjct: 62  QPLQIKVSSSELS-----------------VLDEEKE--EEVVKGEAEPNKDSVVSKAEP 121

Query: 124 KNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEV-SRNPETSISKGCGYVTMGSIN 183
               RPCELYVCN+PRS DIA+L++MF+PFGTV++ EV SRNP+T  S+G GYVTMGSIN
Sbjct: 122 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSIN 181

Query: 184 SAKVSITALDCSDVGGREMRVRFAVDMNP-KMRNRNNLHSSPRKNIIYESPYKIYIGNLA 243
           SAK++I +LD ++VGGREMRVR++VDMNP   RN   L+S+P+K ++YES +K+Y+GNL 
Sbjct: 182 SAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLP 241

Query: 244 WDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNR 303
           W  +P+ LRN FS+FGT+VS ++L+DR+ G++R++ FLSF+S  ERDAA+S NGT+++ R
Sbjct: 242 WFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGR 292

[Close]
BLAST of CmaCh08G001600 vs. TAIR10
Match: AT3G52380.1 (AT3G52380.1 chloroplast RNA-binding protein 33)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-26
Identity = 74/229 (32.31%), Postives = 122/229 (53.28%), Query Frame = 1 

Query: 89  EDAVTAEVIEEDNVKSEDSVSNQEVKNLARPCE-------LYVCNLPRSCDIAELVEMFK 148
           +D + A V EE+ V+ E     +EV+   +  +       LYV NLP +   +EL ++F 
Sbjct: 78  DDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFG 137

Query: 149 PFGTVLAAEVSRNPETSISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFA----- 208
             GTV+  ++  +  T  S+G G+VTMGSI  AK ++   + S +GGR ++V F      
Sbjct: 138 EAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRG 197

Query: 209 ---VDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAK 268
                M  K+R+ N  +         +SP+K+Y GNL W++  + L++ F     V+ AK
Sbjct: 198 GENEVMRTKIRDNNRSY--------VDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAK 257

Query: 269 ILNDRRAGKSRLYGFLSFSSAAERDAAI-SLNGTEFKNRKLIVKEGLER 302
           ++ +R  G+SR +GF+SF SA    +A+ ++NG E + R L +    ER
Sbjct: 258 VIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASER 298

[Close]
BLAST of CmaCh08G001600 vs. TAIR10
Match: AT5G50250.1 (AT5G50250.1 chloroplast RNA-binding protein 31B)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-24
Identity = 70/207 (33.82%), Postives = 112/207 (54.11%), Query Frame = 1 

Query: 96  VIEEDNVKSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNP 155
           V  +++ +SED V   E    A+   L+V NLP   D   L  +F+  GTV  +EV  N 
Sbjct: 92  VTVDESFESEDGVGFPEPPEEAK---LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNR 151

Query: 156 ETSISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRK 215
           +T  S+G G+VTM ++  A+ ++   +  +V GR + V  A     +   +      PR 
Sbjct: 152 DTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQ------PR- 211

Query: 216 NIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAA 275
             +Y++ ++IY+GNL WDV    L  LFS+ G VV A++++DR  G+SR +GF+  S+  
Sbjct: 212 --VYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNEN 271

Query: 276 ERDAAI-SLNGTEFKNRKLIVKEGLER 302
           E + AI +L+G   + R + V    ER
Sbjct: 272 EVNVAIAALDGQNLEGRAIKVNVAEER 286

[Close]
BLAST of CmaCh08G001600 vs. TAIR10
Match: AT1G60000.1 (AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 109.8 bits (273), Expect = 3.1e-24
Identity = 86/275 (31.27%), Postives = 133/275 (48.36%), Query Frame = 1 

Query: 26  NCFPLKQLHSLPSSIHFNHWKLSRLVF---VAPPMPCVSSSSSCSPRFLRHKHGARFPVL 85
           +CF   + H  P+ +H  ++  ++ +     + P P + SS SCS RF            
Sbjct: 9   SCF---KSHHQPNLLHGCNYSSNQTLLRFNFSTPKPLLISSRSCSRRF------------ 68

Query: 86  FTVLDQEDAVTAEVIEEDNVKSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKP 145
             VL +   V  E  E+D     D  S       A   +LY  NLP + D A L ++ + 
Sbjct: 69  -RVLSETITVKLEEEEKD-----DGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQD 128

Query: 146 FGTVLAAEVSRNPETSISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPK 205
           F      EV  N +T  S+G  +VTM ++    + I  LD ++  GR ++V FA    PK
Sbjct: 129 FANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFAD--KPK 188

Query: 206 MRNRNNLHSSPRKNIIY-ESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAG 265
                     P K  +Y E+ +K+++GNL+W V  E L   F + G VV A+++ D   G
Sbjct: 189 ----------PNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTG 248

Query: 266 KSRLYGFLSFSSAAERDAAI-SLNGTEFKNRKLIV 296
           +SR YGF+ +SS AE + A+ SL+G E + R + V
Sbjct: 249 RSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250

[Close]
BLAST of CmaCh08G001600 vs. TAIR10
Match: AT4G24770.1 (AT4G24770.1 31-kDa RNA binding protein)

HSP 1 Score: 109.4 bits (272), Expect = 4.0e-24
Identity = 73/217 (33.64%), Postives = 113/217 (52.07%), Query Frame = 1 

Query: 87  DQEDAVTAEVIEEDNVKSEDSVSNQ-EVKNLARPCELYVCNLPRSCDIAELVEMFKPFGT 146
           D  +   +E  E +   SE +VS + E    +   +L+V NL    +   L  +F+  GT
Sbjct: 116 DASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGT 175

Query: 147 VLAAEVSRNPETSISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRN 206
           V  AEV  N ET  S+G G+VTM S++ A+ ++   +  D+ GR + V  A     +   
Sbjct: 176 VEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER 235

Query: 207 RNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRL 266
                 +PR   +YE  +++Y+GNL WDV    L  LFS+ G VV A+++ DR  G+SR 
Sbjct: 236 ------APR---VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRG 295

Query: 267 YGFLSFSSAAERDAAIS-LNGTEFKNRKLIVKEGLER 302
           +GF++ S   E + AIS L+G   + R + V    ER
Sbjct: 296 FGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323

[Close]
BLAST of CmaCh08G001600 vs. NCBI nr
Match: gi|659119739|ref|XP_008459818.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 415.6 bits (1067), Expect = 7.4e-113
Identity = 222/303 (73.27%), Postives = 243/303 (80.20%), Query Frame = 1 

Query: 1   MANAASCLS-SSSLSFSSRILGQKFHNCFPLKQLHSLPSSIHFNHWKLSRLVFVAPPMPC 60
           MAN A+ L+ SSS S S  IL  K  N    KQLHS PSS HF++ KL  L         
Sbjct: 1   MANLATSLTFSSSSSPSLWILKHKSPNYCTFKQLHSFPSSFHFDYTKLVSL--------- 60

Query: 61  VSSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNVKSEDSVSNQEVKNLARP 120
                       RH HG RFPVLFTVLD E A+T E I E +VKSE SVSNQEVK LARP
Sbjct: 61  ------------RHNHGERFPVLFTVLDNESALTEEAIVEGDVKSESSVSNQEVKKLARP 120

Query: 121 CELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETSISKGCGYVTMGSINSAKVSIT 180
           CELYVCNLPRSCDIAELVEMFKP+GTVLAAEVSRNPET ISKGCGYVTMGSINSAKVSI 
Sbjct: 121 CELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIA 180

Query: 181 ALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDL 240
           ALD SDVGGREMRVRFAVDMNPK RN NNL+SSP+KNIIYESPYK+Y+GNL+WDV+P DL
Sbjct: 181 ALDGSDVGGREMRVRFAVDMNPKNRNLNNLNSSPKKNIIYESPYKVYVGNLSWDVQPGDL 240

Query: 241 RNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGL 300
           RNLFS+FGTVVSAK+LNDRRAGKSR+YGFLSFSSAAERDA+ISL+GTEF  RKL+V+EG 
Sbjct: 241 RNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEFNKRKLVVREGF 282

Query: 301 ERN 303
           ER+
Sbjct: 301 ERS 282

[Close]
BLAST of CmaCh08G001600 vs. NCBI nr
Match: gi|449445537|ref|XP_004140529.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus])

HSP 1 Score: 414.8 bits (1065), Expect = 1.3e-112
Identity = 223/305 (73.11%), Postives = 244/305 (80.00%), Query Frame = 1 

Query: 1   MANAASCL---SSSSLSFSSRILGQKFHNCFPLKQLHSLPSSIHFNHWKLSRLVFVAPPM 60
           MAN A+ L   SSSS S S  IL  K  +    KQLHS  SS HF++ KL  L       
Sbjct: 1   MANLATSLTFSSSSSPSPSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSL------- 60

Query: 61  PCVSSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNVKSEDSVSNQEVKNLA 120
                         RH HG RFPVLFTVLD E A+T E I E +VKSE S+SNQEVK LA
Sbjct: 61  --------------RHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLA 120

Query: 121 RPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETSISKGCGYVTMGSINSAKVS 180
           RPCELYVCNLPRSCDIAELVEMFKP+GTVLAAEVSRNPET ISKGCGYVTMGSINSAKVS
Sbjct: 121 RPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS 180

Query: 181 ITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPE 240
           ITALD SDVGGREMRVRFAVDMN K RN NNLHSSP+KNIIYESPYK+Y+GNL+WDVKP 
Sbjct: 181 ITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPG 240

Query: 241 DLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKE 300
           DLRNLFS+FGTVVSAK+LNDRRAGKSR+YGFLSFSSAAERDA+ISL+GTE+ NRKL+V+E
Sbjct: 241 DLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVRE 284

Query: 301 GLERN 303
           GLER+
Sbjct: 301 GLERS 284

[Close]
BLAST of CmaCh08G001600 vs. NCBI nr
Match: gi|255548039|ref|XP_002515076.1| (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Ricinus communis])

HSP 1 Score: 297.0 bits (759), Expect = 3.8e-77
Identity = 150/248 (60.48%), Postives = 194/248 (78.23%), Query Frame = 1 

Query: 57  MPCVSSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNV-KSEDSVSNQEVKN 116
           +P +SSSSS  P    +K    F +L  ++++E  V  EV  E+N  +SE+    +++K 
Sbjct: 38  IPLLSSSSSLWPA---NKSKRVFAIL-ALVNEESVVAEEVDREENENESEEDELGRQLKK 97

Query: 117 LARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETSISKGCGYVTMGSINSAK 176
             RPCELYVCNLPRSCDIAELVE+FKP+GTV++ EVSRNPET IS+GCG+VTMGSINSAK
Sbjct: 98  QPRPCELYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGISRGCGFVTMGSINSAK 157

Query: 177 VSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVK 236
            +I ALD SD+GGREMRV+F+VDMN   RN   L S+P KN+ YESP+K+Y+GNLAW VK
Sbjct: 158 NAIAALDGSDIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLFYESPFKVYVGNLAWTVK 217

Query: 237 PEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIV 296
           PE+LR+ FS+FGTVVSA++L DR+AGK+R YGFLSFSS  ERDAA+S NG +F+ R L+V
Sbjct: 218 PEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAALSFNGKDFRGRILVV 277

Query: 297 KEGLERNN 304
           ++G+ER +
Sbjct: 278 RKGVERED 281

[Close]
BLAST of CmaCh08G001600 vs. NCBI nr
Match: gi|567904474|ref|XP_006444725.1| (hypothetical protein CICLE_v10021531mg [Citrus clementina])

HSP 1 Score: 292.0 bits (746), Expect = 1.2e-75
Identity = 155/271 (57.20%), Postives = 199/271 (73.43%), Query Frame = 1 

Query: 35  SLPSSIHFNHWKLSRLVFVAPPMPCVSSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTA 94
           SLP+ I+F + KLS                SC  R     H A F  +  V+D+E  V  
Sbjct: 31  SLPTLINFQYPKLS----------------SCWSR----SHPAGFRSVLAVVDEEAVVVE 90

Query: 95  EVIE-EDNV---KSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAE 154
           + I  +DNV   + +D  S +E ++ ARPCELYVCNLPRS DI+EL+EMFKPFGTVL+ E
Sbjct: 91  DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 150

Query: 155 VSRNPETSISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLH 214
           VSRNPET IS+GCGY+TMGSINSAK +I ALD SDVGGREMRVRF++DMN + RN   L 
Sbjct: 151 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 210

Query: 215 SSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLS 274
           S P+K  +YESP+K+Y+GNL+W VKPEDLRN F +FGTVVSA++L+DR+   +R++GF+S
Sbjct: 211 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 270

Query: 275 FSSAAERDAAISLNGTEFKNRKLIVKEGLER 302
           FSS AERDAA+SLNGT+F+ R +IV+EG++R
Sbjct: 271 FSSDAERDAALSLNGTDFRGRTIIVREGVDR 281

[Close]
BLAST of CmaCh08G001600 vs. NCBI nr
Match: gi|731420768|ref|XP_010661497.1| (PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic isoform X2 [Vitis vinifera])

HSP 1 Score: 276.6 bits (706), Expect = 5.4e-71
Identity = 159/298 (53.36%), Postives = 196/298 (65.77%), Query Frame = 1 

Query: 4   AASCLSSSSLSFSSRILGQKFHNCFPLKQLHSLPSSIHFNHWKLSRLVFVAPPMPCVSSS 63
           +AS LSSSS S  S IL +            SLPSSIHF H KLS          C  S 
Sbjct: 3   SASLLSSSSSS--SSILCKSTPTAPKRYVSSSLPSSIHFAHPKLS----------CSISI 62

Query: 64  SSCSPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNVKSEDSVSNQEVKNLARPCELY 123
           S    RF                      T   +  +++ ++DS S QE K+  RPCELY
Sbjct: 63  SLSRTRFS---------------------TVVAVAAEDINTDDS-SPQESKSSVRPCELY 122

Query: 124 VCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETSISKGCGYVTMGSINSAKVSITALDC 183
           VCNLPRSC I+EL+ MFKP GTV + EV RN ET +S+G GYVTM S+  AK +I ALD 
Sbjct: 123 VCNLPRSCGISELLSMFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDG 182

Query: 184 SDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLF 243
           SDVGGREMRVRF+ DMN + RN   L+S+P +N+I+ESPYK+Y+GNLAW +KPEDLRN F
Sbjct: 183 SDVGGREMRVRFSTDMNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHF 242

Query: 244 SQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLER 302
           SQFGTVVSA++++DR+AGK R YGFLSFSSAAE +AA+SLNG EF+ R L+V  G++R
Sbjct: 243 SQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAMSLNGKEFRGRSLVVSAGMKR 266

The following BLAST results are available for this feature:
BLAST of CmaCh08G001600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ROC1_NICSY9.0e-2632.5329 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1[more]
ROC3_NICSY1.5e-2530.4228 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1[more]
CP33_ARATH3.4e-2532.31RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=... [more]
ROC5_NICSY6.4e-2434.2933 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1[more]
CP31B_ARATH1.9e-2333.82RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 S... [more]
BLAST of CmaCh08G001600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAH9_CUCSA8.8e-11373.11Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095890 PE=4 SV=1[more]
B9RNK5_RICCO2.7e-7760.48Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1339680 PE=... [more]
V4U1N6_9ROSI8.6e-7657.20Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021531mg PE=4 SV=1[more]
A0A067H6R2_CITSI8.6e-7657.20Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022096mg PE=4 SV=1[more]
F6I2Y3_VITVI3.7e-7153.36Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02560 PE=4 SV=... [more]
BLAST of CmaCh08G001600 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G01080.21.0e-6749.20 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G52380.11.9e-2632.31 chloroplast RNA-binding protein 33[more]
AT5G50250.11.1e-2433.82 chloroplast RNA-binding protein 31B[more]
AT1G60000.13.1e-2431.27 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G24770.14.0e-2433.64 31-kDa RNA binding protein[more]
BLAST of CmaCh08G001600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119739|ref|XP_008459818.1|7.4e-11373.27PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo][more]
gi|449445537|ref|XP_004140529.1|1.3e-11273.11PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus][more]
gi|255548039|ref|XP_002515076.1|3.8e-7760.48PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Ricinus communis][more]
gi|567904474|ref|XP_006444725.1|1.2e-7557.20hypothetical protein CICLE_v10021531mg [Citrus clementina][more]
gi|731420768|ref|XP_010661497.1|5.4e-7153.36PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic isoform X2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0008150 biological_process
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005634 nucleus
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G001600.1CmaCh08G001600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 225..293
score: 1.8E-18coord: 122..192
score: 1.8
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 224..296
score: 2.2E-22coord: 121..194
score: 2.5
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 223..300
score: 17.66coord: 120..198
score: 13
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 210..302
score: 1.3E-24coord: 114..202
score: 1.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 119..214
score: 1.11E-21coord: 217..301
score: 1.75
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 98..296
score: 4.4