CmoCh07G008800 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G008800
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSmall nuclear ribonucleoprotein G, putative
LocationCmo_Chr07 : 4163962 .. 4166350 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCTGCTTCTCGATTGATTAGGGTTTTTCCTTCCTCTGATCATTCTTCTACCAAAACCTCTTCCCATCTCTCGTTCTTCACCATGAGTAGGTCAGGCCAGCCTCCAGATCTTAAAAAGTAAGTGCTGCCCTAAATTTTATCCTGTTCGGTGTATTTTTGGTTTGATTATTTCAACTTTTTTTTTCCTTGGTCCTCATTTTTCCCTTCTTTATGCAGATACATGGACAAGAAGCTTCAGAGTAAGTTCTGTTCCTCACGAGCTTGTTTATCTTATTCGTTGTCGCACCGTTTAGGTTCTGGAAGTTTGGAAATGACAATTTGTTATTCTGAAAGTCGAGAATCCGTCAATTCTTTTCGTTTTCTTTGAATTTATGCCATTTGTTTTATAATTTCGTTTGTTTATTAGTGTTCGTAATGTGAGGAACCTGAAGTTGACTATTCCTAGTTTAGTACCTATGTTAAGATACGAAACTGTTTGGAGACGAACGGAAGAAGGATTGGACTTCAGAGTTAGATTATAGGGTGTTGAGAATTGTTGGGAGGGAGTCCAACGTTGACTAATTAAGGGGTGATCATGGGTTTAAGTAAGGAATATATCTCCATTGGTACGAGCCATTTCGGGGAAACCAAAAGCAAAGCCATGAGAGCTTATTCTCAAAGTGGATAATATCATATCATTGTGGAGGTTCGTAGTTCCTAACATGGTACCAGAGCTATGCCTTTAACTTAGCCATGTCAATAAAATTCTTAAGTGTCGAACAAAGAAGTTGCTAAGCTTGAATATGTAGTCAAAAGTGACTCAAGTGTCGAACAAAGAGCGTACTTTGTTTGAGGGCTCCAGAGAAAAGAGTCGAGTCTCAATTAAGGGGAGAGTGTTCGAGGGCTACATAGGCCTTAGGGGAGGCTTATGGTGTACCTTGTTCGAGGGGAGGATTGTTGAGGATTGTTGGGAGGGAGACCCACTTTGGCTAATTAAGGGGATGATCATGGGTTATAAAGTAAGGAATACATCTCCATTGGTATGAGATCTTTTTGGAAAACCAAAAACATAGTCATGAGAGTTTATGCTCAAAGTGGACAATGTCATACCATTGTGGGGGTCCATGGTTACTAAAATATAGTACTAATGACCATTTTTCTTTTTGTGATGATAGAGACCTAAATCTCACCGTACATCTATCTGCTACATTTGGTTGATTATATCCTAGGTAGGTGGAGACAATCCCATGATTGCTGAGAGACCTAAATTCTAGATAATCTACCAAAATAAATGGTCATTGAGGCAGCTTTCTTCATTAGGTCGAACATTGGTTTTTCAGTCATTGCATGTATAATCCGGAAATTAAAGAAATCTCACATGTCAGCAAGTTTTGTTTACAAATTGTTGATGCTTCTGAATTACAATTTGCAGTAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTCGTTGACAACACCGTGGAAGTGAACGGTAACGAGAAAACCGAAATCGGCATGGTGGTGCGTGTGATTTTGCAATCTAATTCTTCTCTATGTTTGTTTGCTTAAATTGATAACCACTGATAGAGTTCAAGAATTGATTTCCCTTATTGGTTTCCATTTCAGGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATGGTGCACGCGTTGGAATTTGCTGCTCTGTTTCATAGATTGAGTGAGTAAAACATTCGGAACTGTTGCATTTGTAATTTTGGGATGTTACGAATATCAGATGGATTTCTTGTGCTCCCATCATTCTGAACACCTGGTTTATAAATTTCAGCGATGGGGTTTCTGTATTATGGATTCAATTACCTTGCAACTCTTAGTGTATGAAACCCATCGTATCACTTGAAGATGTGTTCATTAATCCCATTACGGAGGACCCAAAAAGAAGACATAGTTTCAACCCAGTTTGTATCAAGTCCCAACTTCAATTTACATAGCTTGTCATTCTGAGTTTGTTCGAGTTTTTCACTGAATGAGAGTCGGGATTACGATGTAATCCTTAGAACTTTTTGTAGTAGTCGTACTTCCATTTTGCAGGAACGTTGGGGAAGGAGTTTAGCATTACACTATCTGCACGACAAAACCATCGTGCAGGAATTGTCCGAGCTCTTCTAGTCCTTCGATGGTCGAAGAAGAAGATGGTCCAAAGGTCAAACATTCCCATTGACTTTTCCATGAAATCAGGCTGTTGTTTCTTCATGGGCAAGTGCAACTGCCTGGGAAGTCTTTTAGCATTTAGCCATTGAAAAGTCTTAAACCCAAAACATTGTTCTACTTTTCTTTCATTCCCAAAGGTTAGGTCTAAAGATAAG

mRNA sequence

ACCTGCTTCTCGATTGATTAGGGTTTTTCCTTCCTCTGATCATTCTTCTACCAAAACCTCTTCCCATCTCTCGTTCTTCACCATGAGTAGGTCAGGCCAGCCTCCAGATCTTAAAAAATACATGGACAAGAAGCTTCAGATAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTCGTTGACAACACCGTGGAAGTGAACGGTAACGAGAAAACCGAAATCGGCATGGTGGTGCGTGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATGGTGCACGCGTTGGAATTTGCTGCTCTGTTTCATAGATTGAGTGAGTAAAACATTCGGAACTGTTGCATTTGTAATTTTGGGATGTTACGAATATCAGATGGATTTCTTGTGCTCCCATCATTCTGAACACCTGGTTTATAAATTTCAGCGATGGGGTTTCTGTATTATGGATTCAATTACCTTGCAACTCTTAGTGTATGAAACCCATCGTATCACTTGAAGATGTGTTCATTAATCCCATTACGGAGGACCCAAAAAGAAGACATAGTTTCAACCCAGTTTGTATCAAGTCCCAACTTCAATTTACATAGCTTGTCATTCTGAGTTTGTTCGAGTTTTTCACTGAATGAGAGTCGGGATTACGATGTAATCCTTAGAACTTTTTGTAGTAGTCGTACTTCCATTTTGCAGGAACGTTGGGGAAGGAGTTTAGCATTACACTATCTGCACGACAAAACCATCGTGCAGGAATTGTCCGAGCTCTTCTAGTCCTTCGATGGTCGAAGAAGAAGATGGTCCAAAGGTCAAACATTCCCATTGACTTTTCCATGAAATCAGGCTGTTGTTTCTTCATGGGCAAGTGCAACTGCCTGGGAAGTCTTTTAGCATTTAGCCATTGAAAAGTCTTAAACCCAAAACATTGTTCTACTTTTCTTTCATTCCCAAAGGTTAGGTCTAAAGATAAG

Coding sequence (CDS)

ATGAGTAGGTCAGGCCAGCCTCCAGATCTTAAAAAATACATGGACAAGAAGCTTCAGATAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTCGTTGACAACACCGTGGAAGTGAACGGTAACGAGAAAACCGAAATCGGCATGGTGGTGCGTGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGA
Homology
[Close]
BLAST of CmoCh07G008800 vs. Swiss-Prot
Match: RUXG_ARATH (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.0e-32
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNR 81
            VIRGNS+VTVEALEPV R
Sbjct: 61 --VIRGNSIVTVEALEPVGR 78

[Close]
BLAST of CmoCh07G008800 vs. Swiss-Prot
Match: RUXG_MEDSA (Probable small nuclear ribonucleoprotein G OS=Medicago sativa GN=C29 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.8e-29
Identity = 66/78 (84.62%), Postives = 71/78 (91.03%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MS SGQPP LKKYMDK+LQI + ANR++VGTLRGFDQFMNLVVDNTVEVNGNEK +IGMV
Sbjct: 1  MSTSGQPPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPV 79
            VIRGNSVVTVEALEPV
Sbjct: 61 --VIRGNSVVTVEALEPV 76

[Close]
BLAST of CmoCh07G008800 vs. Swiss-Prot
Match: RUXG_DROME (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster GN=SNRPG PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-15
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1 

Query: 7  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTEIGMVVRVIR 66
          PP++KKYMDK++ +K+N  R V G LRGFD FMN+V+D+TV E   N K  IGMV  VIR
Sbjct: 6  PPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMV--VIR 65

Query: 67 GNSVVTVEALEPV 79
          GNS+V VEAL+ V
Sbjct: 66 GNSIVMVEALDRV 76

[Close]
BLAST of CmoCh07G008800 vs. Swiss-Prot
Match: RUXG_BOVIN (Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.5e-15
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 

Query: 7  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTEIGMVVRVIR 66
          PP+LKK+MDKKL +K+N  R V G LRGFD FMNLV+D  VE+    ++  IGMV  VIR
Sbjct: 6  PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV--VIR 65

Query: 67 GNSVVTVEALEPV 79
          GNS++ +EALE V
Sbjct: 66 GNSIIMLEALERV 76

[Close]
BLAST of CmoCh07G008800 vs. Swiss-Prot
Match: RUXG_HUMAN (Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.5e-15
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 

Query: 7  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTEIGMVVRVIR 66
          PP+LKK+MDKKL +K+N  R V G LRGFD FMNLV+D  VE+    ++  IGMV  VIR
Sbjct: 6  PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV--VIR 65

Query: 67 GNSVVTVEALEPV 79
          GNS++ +EALE V
Sbjct: 66 GNSIIMLEALERV 76

[Close]
BLAST of CmoCh07G008800 vs. TrEMBL
Match: A0A0A0KHH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G452700 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-33
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNRMQ 83
            VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 --VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of CmoCh07G008800 vs. TrEMBL
Match: A0A0D2QB72_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G238900 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 7.0e-33
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNRMQ 83
            VIRGNSVVTVEALEPV RMQ
Sbjct: 61 --VIRGNSVVTVEALEPVGRMQ 80

[Close]
BLAST of CmoCh07G008800 vs. TrEMBL
Match: B9SWG3_RICCO (Small nuclear ribonucleoprotein G, putative OS=Ricinus communis GN=RCOM_0293010 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.2e-33
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+VVGTLRGFDQFMNLVVDNTVEVNG+EKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDEKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNRMQ 83
            VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 --VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of CmoCh07G008800 vs. TrEMBL
Match: D7TJ87_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03130 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.2e-33
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+VVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNRMQ 83
            VIRGNSVVTVEALEPV+RMQ
Sbjct: 61 --VIRGNSVVTVEALEPVSRMQ 80

[Close]
BLAST of CmoCh07G008800 vs. TrEMBL
Match: A0A0D2QAL8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G154400 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-32
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+VVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNRMQ 83
            VIRGNSVVTVEALEPV RMQ
Sbjct: 61 --VIRGNSVVTVEALEPVGRMQ 80

[Close]
BLAST of CmoCh07G008800 vs. TAIR10
Match: AT2G23930.1 (AT2G23930.1 probable small nuclear ribonucleoprotein G)

HSP 1 Score: 140.2 bits (352), Expect = 5.7e-34
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNR 81
            VIRGNS+VTVEALEPV R
Sbjct: 61 --VIRGNSIVTVEALEPVGR 78

[Close]
BLAST of CmoCh07G008800 vs. TAIR10
Match: AT3G11500.1 (AT3G11500.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 139.8 bits (351), Expect = 7.4e-34
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+VVGTLRGFDQFMNLVVDNTVEVNG++KT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNR 81
            VIRGNS+VTVEALEPV R
Sbjct: 61 --VIRGNSIVTVEALEPVGR 78

[Close]
BLAST of CmoCh07G008800 vs. TAIR10
Match: AT2G03870.2 (AT2G03870.2 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.7e-06
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 1 

Query: 9  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTEIGM 68
          DL K++DK +Q+K+   R V GTL+G+DQ +NLV+D  VE            ++   +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69

Query: 69 VVRVIRGNSVVTV 73
          +  V RG +V+ V
Sbjct: 70 I--VCRGTAVMLV 80

[Close]
BLAST of CmoCh07G008800 vs. TAIR10
Match: AT3G14080.1 (AT3G14080.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.8e-06
Identity = 26/69 (37.68%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 10 LKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVE--VNGNEKTEIGMVVRVIRGN 69
          L  Y+D+KL + +   R ++GTLR FDQF N V++   E  + G +  +I + + VIRG 
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74

Query: 70 SVVTVEALE 77
          +VV +  L+
Sbjct: 75 NVVLIGELD 83

[Close]
BLAST of CmoCh07G008800 vs. NCBI nr
Match: gi|449451158|ref|XP_004143329.1| (PREDICTED: probable small nuclear ribonucleoprotein G [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.7e-33
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNRMQ 83
            VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 --VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of CmoCh07G008800 vs. NCBI nr
Match: gi|823136790|ref|XP_012468163.1| (PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii])

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-32
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNRMQ 83
            VIRGNSVVTVEALEPV RMQ
Sbjct: 61 --VIRGNSVVTVEALEPVGRMQ 80

[Close]
BLAST of CmoCh07G008800 vs. NCBI nr
Match: gi|255578959|ref|XP_002530332.1| (PREDICTED: probable small nuclear ribonucleoprotein G [Ricinus communis])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+VVGTLRGFDQFMNLVVDNTVEVNG+EKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDEKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNRMQ 83
            VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 --VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of CmoCh07G008800 vs. NCBI nr
Match: gi|225440849|ref|XP_002282193.1| (PREDICTED: probable small nuclear ribonucleoprotein G [Vitis vinifera])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+VVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNRMQ 83
            VIRGNSVVTVEALEPV+RMQ
Sbjct: 61 --VIRGNSVVTVEALEPVSRMQ 80

[Close]
BLAST of CmoCh07G008800 vs. NCBI nr
Match: gi|747093043|ref|XP_011094310.1| (PREDICTED: probable small nuclear ribonucleoprotein G [Sesamum indicum])

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-32
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 1 

Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+VVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VRVIRGNSVVTVEALEPVNRMQ 83
            VIRGNSVVTVEALEPVNR Q
Sbjct: 61 --VIRGNSVVTVEALEPVNRAQ 80

The following BLAST results are available for this feature:
BLAST of CmoCh07G008800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RUXG_ARATH1.0e-3288.75Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 ... [more]
RUXG_MEDSA6.8e-2984.62Probable small nuclear ribonucleoprotein G OS=Medicago sativa GN=C29 PE=3 SV=1[more]
RUXG_DROME1.5e-1560.27Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster GN=SNRPG P... [more]
RUXG_BOVIN9.5e-1558.90Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3 SV=1[more]
RUXG_HUMAN9.5e-1558.90Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1 SV=1[more]
BLAST of CmoCh07G008800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHH9_CUCSA1.9e-3393.90Uncharacterized protein OS=Cucumis sativus GN=Csa_6G452700 PE=4 SV=1[more]
A0A0D2QB72_GOSRA7.0e-3393.90Uncharacterized protein OS=Gossypium raimondii GN=B456_002G238900 PE=4 SV=1[more]
B9SWG3_RICCO9.2e-3392.68Small nuclear ribonucleoprotein G, putative OS=Ricinus communis GN=RCOM_0293010 ... [more]
D7TJ87_VITVI9.2e-3392.68Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03130 PE=4 SV=... [more]
A0A0D2QAL8_GOSRA1.2e-3292.68Uncharacterized protein OS=Gossypium raimondii GN=B456_006G154400 PE=4 SV=1[more]
BLAST of CmoCh07G008800 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G23930.15.7e-3488.75 probable small nuclear ribonucleoprotein G[more]
AT3G11500.17.4e-3488.75 Small nuclear ribonucleoprotein family protein[more]
AT2G03870.21.7e-0636.99 Small nuclear ribonucleoprotein family protein[more]
AT3G14080.13.8e-0637.68 Small nuclear ribonucleoprotein family protein[more]
BLAST of CmoCh07G008800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451158|ref|XP_004143329.1|2.7e-3393.90PREDICTED: probable small nuclear ribonucleoprotein G [Cucumis sativus][more]
gi|823136790|ref|XP_012468163.1|1.0e-3293.90PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii][more]
gi|255578959|ref|XP_002530332.1|1.3e-3292.68PREDICTED: probable small nuclear ribonucleoprotein G [Ricinus communis][more]
gi|225440849|ref|XP_002282193.1|1.3e-3292.68PREDICTED: probable small nuclear ribonucleoprotein G [Vitis vinifera][more]
gi|747093043|ref|XP_011094310.1|1.7e-3292.68PREDICTED: probable small nuclear ribonucleoprotein G [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005575 cellular_component
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0043186 P granule
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G008800.1CmoCh07G008800.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 9..73
score: 1.2
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 8..74
score: 1.2
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 8..77
score: 1.71
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 8..76
score: 1.9
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 1..81
score: 5.7
NoneNo IPR availablePANTHERPTHR10553:SF9SUBFAMILY NOT NAMEDcoord: 1..81
score: 5.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G008800Cucsa.083440Cucumber (Gy14) v1cgycmoB0150
CmoCh07G008800CmaCh03G011500Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G008800CmaCh07G008480Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G008800Cla018404Watermelon (97103) v1cmowmB825
CmoCh07G008800Csa6G452700Cucumber (Chinese Long) v2cmocuB865
CmoCh07G008800MELO3C024552Melon (DHL92) v3.5.1cmomeB783
CmoCh07G008800ClCG04G010110Watermelon (Charleston Gray)cmowcgB769
CmoCh07G008800CSPI06G25550Wild cucumber (PI 183967)cmocpiB874
CmoCh07G008800Lsi01G012150Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G008800Cp4.1LG10g03880Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G008800Cp4.1LG19g04920Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G008800MELO3C024552.2Melon (DHL92) v3.6.1cmomedB889
CmoCh07G008800CsaV3_6G040740Cucumber (Chinese Long) v3cmocucB1020
CmoCh07G008800Cla97C04G076950Watermelon (97103) v2cmowmbB867
CmoCh07G008800Bhi03G001414Wax gourdcmowgoB1055
CmoCh07G008800CsGy6G025000Cucumber (Gy14) v2cgybcmoB843
CmoCh07G008800Carg05360Silver-seed gourdcarcmoB1100
CmoCh07G008800Carg10487Silver-seed gourdcarcmoB0338
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh07G008800CmoCh03G011400Cucurbita moschata (Rifu)cmocmoB455
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G008800Silver-seed gourdcarcmoB0352
CmoCh07G008800Silver-seed gourdcarcmoB1242
CmoCh07G008800Cucumber (Chinese Long) v3cmocucB0997
CmoCh07G008800Cucumber (Chinese Long) v3cmocucB1021
CmoCh07G008800Watermelon (97103) v2cmowmbB851
CmoCh07G008800Watermelon (97103) v2cmowmbB854
CmoCh07G008800Wax gourdcmowgoB1041
CmoCh07G008800Wax gourdcmowgoB1048
CmoCh07G008800Cucurbita moschata (Rifu)cmocmoB228
CmoCh07G008800Cucurbita moschata (Rifu)cmocmoB443
CmoCh07G008800Cucurbita moschata (Rifu)cmocmoB483
CmoCh07G008800Cucumber (Gy14) v1cgycmoB0683
CmoCh07G008800Cucumber (Gy14) v1cgycmoB1071
CmoCh07G008800Cucurbita maxima (Rimu)cmacmoB275
CmoCh07G008800Cucurbita maxima (Rimu)cmacmoB628
CmoCh07G008800Cucurbita maxima (Rimu)cmacmoB836
CmoCh07G008800Wild cucumber (PI 183967)cmocpiB854
CmoCh07G008800Wild cucumber (PI 183967)cmocpiB875
CmoCh07G008800Cucumber (Chinese Long) v2cmocuB844
CmoCh07G008800Melon (DHL92) v3.5.1cmomeB769
CmoCh07G008800Melon (DHL92) v3.5.1cmomeB777
CmoCh07G008800Watermelon (Charleston Gray)cmowcgB753
CmoCh07G008800Watermelon (Charleston Gray)cmowcgB758
CmoCh07G008800Watermelon (97103) v1cmowmB804
CmoCh07G008800Watermelon (97103) v1cmowmB832
CmoCh07G008800Cucurbita pepo (Zucchini)cmocpeB821
CmoCh07G008800Cucurbita pepo (Zucchini)cmocpeB824
CmoCh07G008800Cucurbita pepo (Zucchini)cmocpeB831
CmoCh07G008800Bottle gourd (USVL1VR-Ls)cmolsiB772
CmoCh07G008800Bottle gourd (USVL1VR-Ls)cmolsiB787
CmoCh07G008800Cucumber (Gy14) v2cgybcmoB419
CmoCh07G008800Cucumber (Gy14) v2cgybcmoB844
CmoCh07G008800Melon (DHL92) v3.6.1cmomedB873
CmoCh07G008800Melon (DHL92) v3.6.1cmomedB881