Cla97C04G076950 (gene) Watermelon (97103) v2

Overview
NameCla97C04G076950
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionSmall nuclear ribonucleoprotein G, putative
LocationCla97Chr04 : 24484369 .. 24485129 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAAAGCTTCAGAGTAAGTTCTGTTCCTCAGGAGCTTCTTTATCCTTTTCGTTGTCGCATTTGTTTTCTCTGGCTCAGTTAATTCTGGAAATGTTTGTTTTCTTTGAAGTTATGCCATTTGATTTGCAATTTCGTTTTCTATTGATTGGTGTGTATTTTATTGCGCACTGAAACATAACAACAGTCTGTTTGTAATGTGAGGATCCTGAAGTTGCGTCGTCCGAGTCTAGGGTTTAGGATTTAGTATTTACGTAACTGTTTGGAGACGAACGGAGGAAGGATTGGAACTTTAGCGTTAGATGATATAGCACTGAAGGTTGAATCTCTCTAGCAAATTTAATGGTCATCTGCCATAGATTGAACATCTATATTTCAGTTACGGCATGTGAAATCGAGGGATTTCGAATTCTTGCATGTTGAATCTATGGGTATACAAATTGACGATGCTTCTGAATTGCATTTTGCAGTAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGGGTCGCTGTTATTTGTGTTCTAATCTTTCTCTATGTTTGCTTCAATTGTTTATCACTGCAATAGTCAAGAATTGATCACCCTTTTTGGTTTTCATTTCAGGTGATTAGGGGCAATAGTGTTGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGA

mRNA sequence

ATGGACAAAAAGCTTCAGATAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTTGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGA

Coding sequence (CDS)

ATGGACAAAAAGCTTCAGATAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTTGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGA

Protein sequence

MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Homology
[Close]
BLAST of Cla97C04G076950 vs. NCBI nr
Match: XP_004143329.1 (PREDICTED: probable small nuclear ribonucleoprotein G [Cucumis sativus] >XP_008462580.1 PREDICTED: probable small nuclear ribonucleoprotein G [Cucumis melo] >KGN48269.1 hypothetical protein Csa_6G452700 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL
Sbjct: 14 MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 73

Query: 61 EPVNRMQ 68
          EPVNRMQ
Sbjct: 74 EPVNRMQ 80

[Close]
BLAST of Cla97C04G076950 vs. NCBI nr
Match: XP_023517274.1 (probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 3.5e-27
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL
Sbjct: 14 MDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 73

Query: 61 EPVNRMQ 68
          EPVNRMQ
Sbjct: 74 EPVNRMQ 80

[Close]
BLAST of Cla97C04G076950 vs. NCBI nr
Match: XP_022132404.1 (probable small nuclear ribonucleoprotein G [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 7.7e-27
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL
Sbjct: 14 MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 73

Query: 61 EPVNRMQ 68
          EPVNR Q
Sbjct: 74 EPVNRTQ 80

[Close]
BLAST of Cla97C04G076950 vs. NCBI nr
Match: XP_012468163.1 (PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii] >XP_016711763.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium hirsutum] >XP_016714896.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium hirsutum] >XP_017622516.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium arboreum] >KJB16599.1 hypothetical protein B456_002G238900 [Gossypium raimondii] >PPE02517.1 hypothetical protein GOBAR_DD00501 [Gossypium barbadense] >PPR80610.1 hypothetical protein GOBAR_AA40103 [Gossypium barbadense])

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL
Sbjct: 14 MDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 73

Query: 61 EPVNRMQ 68
          EPV RMQ
Sbjct: 74 EPVGRMQ 80

[Close]
BLAST of Cla97C04G076950 vs. NCBI nr
Match: KJB16600.1 (hypothetical protein B456_002G238900 [Gossypium raimondii])

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL
Sbjct: 1  MDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60

Query: 61 EPVNRMQ 68
          EPV RMQ
Sbjct: 61 EPVGRMQ 67

[Close]
BLAST of Cla97C04G076950 vs. TrEMBL
Match: tr|A0A1S3CHS7|A0A1S3CHS7_CUCME (probable small nuclear ribonucleoprotein G OS=Cucumis melo OX=3656 GN=LOC103500906 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.0e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL
Sbjct: 14 MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 73

Query: 61 EPVNRMQ 68
          EPVNRMQ
Sbjct: 74 EPVNRMQ 80

[Close]
BLAST of Cla97C04G076950 vs. TrEMBL
Match: tr|A0A0A0KHH9|A0A0A0KHH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452700 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.0e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL
Sbjct: 14 MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 73

Query: 61 EPVNRMQ 68
          EPVNRMQ
Sbjct: 74 EPVNRMQ 80

[Close]
BLAST of Cla97C04G076950 vs. TrEMBL
Match: tr|A0A1U8LJV9|A0A1U8LJV9_GOSHI (probable small nuclear ribonucleoprotein G OS=Gossypium hirsutum OX=3635 GN=LOC107928220 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.7e-27
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL
Sbjct: 14 MDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 73

Query: 61 EPVNRMQ 68
          EPV RMQ
Sbjct: 74 EPVGRMQ 80

[Close]
BLAST of Cla97C04G076950 vs. TrEMBL
Match: tr|A0A2P5STX6|A0A2P5STX6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA40103 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.7e-27
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL
Sbjct: 14 MDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 73

Query: 61 EPVNRMQ 68
          EPV RMQ
Sbjct: 74 EPVGRMQ 80

[Close]
BLAST of Cla97C04G076950 vs. TrEMBL
Match: tr|A0A0D2QB72|A0A0D2QB72_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G238900 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.7e-27
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL
Sbjct: 14 MDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 73

Query: 61 EPVNRMQ 68
          EPV RMQ
Sbjct: 74 EPVGRMQ 80

[Close]
BLAST of Cla97C04G076950 vs. Swiss-Prot
Match: sp|O82221|RUXG_ARATH (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At2g23930 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.9e-27
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEAL
Sbjct: 14 MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEAL 73

Query: 61 EPVNR 66
          EPV R
Sbjct: 74 EPVGR 78

[Close]
BLAST of Cla97C04G076950 vs. Swiss-Prot
Match: sp|P24715|RUXG_MEDSA (Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-24
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDK+LQI L ANR+++GTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEAL
Sbjct: 14 MDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEAL 73

Query: 61 EPV 64
          EPV
Sbjct: 74 EPV 76

[Close]
BLAST of Cla97C04G076950 vs. Swiss-Prot
Match: sp|Q9VXE0|RUXG_DROME (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-13
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEA 60
          MDK++ +KLN  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGNS+V VEA
Sbjct: 13 MDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEA 72

Query: 61 LEPV 64
          L+ V
Sbjct: 73 LDRV 76

[Close]
BLAST of Cla97C04G076950 vs. Swiss-Prot
Match: sp|Q3ZBL0|RUXG_BOVIN (Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.4e-13
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEA 60
          MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EA
Sbjct: 13 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEA 72

Query: 61 LEPV 64
          LE V
Sbjct: 73 LERV 76

[Close]
BLAST of Cla97C04G076950 vs. Swiss-Prot
Match: sp|P62308|RUXG_HUMAN (Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.4e-13
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEA 60
          MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EA
Sbjct: 13 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEA 72

Query: 61 LEPV 64
          LE V
Sbjct: 73 LERV 76

[Close]
BLAST of Cla97C04G076950 vs. TAIR10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G)

HSP 1 Score: 120.6 bits (301), Expect = 3.8e-28
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEAL
Sbjct: 14 MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEAL 73

Query: 61 EPVNR 66
          EPV R
Sbjct: 74 EPVGR 78

[Close]
BLAST of Cla97C04G076950 vs. TAIR10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 120.2 bits (300), Expect = 5.0e-28
Identity = 59/65 (90.77%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 60
          MDKKLQIKLNANR+V+GTLRGFDQFMNLVVDNTVEVNG++KTDIGMVVIRGNS+VTVEAL
Sbjct: 14 MDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMVVIRGNSIVTVEAL 73

Query: 61 EPVNR 66
          EPV R
Sbjct: 74 EPVGR 78

[Close]
BLAST of Cla97C04G076950 vs. TAIR10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.4e-06
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRG 58
          +DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG
Sbjct: 15 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRG 74

[Close]
BLAST of Cla97C04G076950 vs. TAIR10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 46.2 bits (108), Expect = 9.1e-06
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVE--VNGNEKTDI--GMVVIRGNSVVT 60
          +D+KL + L   R ++GTLR FDQF N V++   E  + G +  DI  G+ VIRG +VV 
Sbjct: 19 LDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGENVVL 78

Query: 61 VEALE 62
          +  L+
Sbjct: 79 IGELD 83

[Close]
BLAST of Cla97C04G076950 vs. TAIR10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 43.1 bits (100), Expect = 7.7e-05
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 0 

Query: 1  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVE--VNGNEKTDI--GMVVIRGNSVVT 60
          +DKKL + L   R ++G LR FDQF N V++   E  + G+   DI  G+ +IRG +VV 
Sbjct: 19 LDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGENVVL 78

Query: 61 VEALE 62
          +  L+
Sbjct: 79 IGELD 83

The following BLAST results are available for this feature:
BLAST of Cla97C04G076950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143329.11.6e-27100.00PREDICTED: probable small nuclear ribonucleoprotein G [Cucumis sativus] >XP_0084... [more]
XP_023517274.13.5e-2797.01probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo][more]
XP_022132404.17.7e-2798.51probable small nuclear ribonucleoprotein G [Momordica charantia][more]
XP_012468163.11.0e-2697.01PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii] >XP_... [more]
KJB16600.11.0e-2697.01hypothetical protein B456_002G238900 [Gossypium raimondii][more]
BLAST of Cla97C04G076950 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CHS7|A0A1S3CHS7_CUCME1.0e-27100.00probable small nuclear ribonucleoprotein G OS=Cucumis melo OX=3656 GN=LOC1035009... [more]
tr|A0A0A0KHH9|A0A0A0KHH9_CUCSA1.0e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452700 PE=4 SV=1[more]
tr|A0A1U8LJV9|A0A1U8LJV9_GOSHI6.7e-2797.01probable small nuclear ribonucleoprotein G OS=Gossypium hirsutum OX=3635 GN=LOC1... [more]
tr|A0A2P5STX6|A0A2P5STX6_GOSBA6.7e-2797.01Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA40103 PE=4 SV... [more]
tr|A0A0D2QB72|A0A0D2QB72_GOSRA6.7e-2797.01Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G238900 PE=4 ... [more]
BLAST of Cla97C04G076950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O82221|RUXG_ARATH6.9e-2792.31Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At... [more]
sp|P24715|RUXG_MEDSA1.1e-2488.89Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=... [more]
sp|Q9VXE0|RUXG_DROME1.5e-1362.50Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN... [more]
sp|Q3ZBL0|RUXG_BOVIN7.4e-1360.94Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1[more]
sp|P62308|RUXG_HUMAN7.4e-1360.94Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1[more]
BLAST of Cla97C04G076950 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G23930.13.8e-2892.31probable small nuclear ribonucleoprotein G[more]
AT3G11500.15.0e-2890.77Small nuclear ribonucleoprotein family protein[more]
AT2G03870.25.4e-0637.88Small nuclear ribonucleoprotein family protein[more]
AT3G14080.19.1e-0641.54Small nuclear ribonucleoprotein family protein[more]
AT1G19120.17.7e-0540.00Small nuclear ribonucleoprotein family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR034098Sm_G
IPR001163LSM_dom_euk/arc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0043186 P granule
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0005575 cellular_component
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C04G076950.1Cla97C04G076950.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..59
e-value: 1.1E-15
score: 68.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 1..58
e-value: 7.9E-19
score: 67.0
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..63
e-value: 5.2E-26
score: 92.1
NoneNo IPR availablePANTHERPTHR10553:SF15SUBFAMILY NOT NAMEDcoord: 1..65
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 1..65
IPR034098Small nuclear ribonucleoprotein GCDDcd01719Sm_Gcoord: 1..61
e-value: 6.35429E-31
score: 103.751
IPR010920LSM domain superfamilySUPERFAMILYSSF50182Sm-like ribonucleoproteinscoord: 1..64

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C04G076950Cla018404Watermelon (97103) v1wmwmbB291
Cla97C04G076950Csa6G452700Cucumber (Chinese Long) v2cuwmbB455
Cla97C04G076950MELO3C024552Melon (DHL92) v3.5.1mewmbB539
Cla97C04G076950ClCG04G010110Watermelon (Charleston Gray)wcgwmbB200
Cla97C04G076950CSPI06G25550Wild cucumber (PI 183967)cpiwmbB479
Cla97C04G076950Cucsa.083440Cucumber (Gy14) v1cgywmbB086
Cla97C04G076950CmaCh07G008480Cucurbita maxima (Rimu)cmawmbB897
Cla97C04G076950CmaCh03G011500Cucurbita maxima (Rimu)cmawmbB689
Cla97C04G076950CmoCh03G011400Cucurbita moschata (Rifu)cmowmbB662
Cla97C04G076950CmoCh07G008800Cucurbita moschata (Rifu)cmowmbB867
Cla97C04G076950Lsi01G012150Bottle gourd (USVL1VR-Ls)lsiwmbB140
Cla97C04G076950CsGy6G025000Cucumber (Gy14) v2cgybwmbB431
Cla97C04G076950MELO3C024552.2Melon (DHL92) v3.6.1medwmbB533
Cla97C04G076950Carg10487Silver-seed gourdcarwmbB0244
Cla97C04G076950Carg05360Silver-seed gourdcarwmbB0849
Cla97C04G076950CsaV3_6G040740Cucumber (Chinese Long) v3cucwmbB472
Cla97C04G076950Bhi03G001414Wax gourdwgowmbB433
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C04G076950Watermelon (97103) v2wmbwmbB052
Cla97C04G076950Watermelon (97103) v2wmbwmbB098
Cla97C04G076950Silver-seed gourdcarwmbB0256
Cla97C04G076950Silver-seed gourdcarwmbB0968
Cla97C04G076950Cucumber (Gy14) v2cgybwmbB195
Cla97C04G076950Cucurbita moschata (Rifu)cmowmbB239
Cla97C04G076950Cucumber (Gy14) v1cgywmbB429
Cla97C04G076950Cucurbita maxima (Rimu)cmawmbB259
Cla97C04G076950Cucurbita maxima (Rimu)cmawmbB647
Cla97C04G076950Cucurbita maxima (Rimu)cmawmbB855
Cla97C04G076950Cucurbita moschata (Rifu)cmowmbB620
Cla97C04G076950Cucurbita moschata (Rifu)cmowmbB832
Cla97C04G076950Wild cucumber (PI 183967)cpiwmbB208
Cla97C04G076950Cucumber (Chinese Long) v3cucwmbB205
Cla97C04G076950Cucumber (Chinese Long) v2cuwmbB203
Cla97C04G076950Bottle gourd (USVL1VR-Ls)lsiwmbB067
Cla97C04G076950Bottle gourd (USVL1VR-Ls)lsiwmbB235
Cla97C04G076950Melon (DHL92) v3.6.1medwmbB318
Cla97C04G076950Melon (DHL92) v3.5.1mewmbB331
Cla97C04G076950Watermelon (Charleston Gray)wcgwmbB047
Cla97C04G076950Watermelon (Charleston Gray)wcgwmbB157
Cla97C04G076950Watermelon (97103) v1wmwmbB067
Cla97C04G076950Watermelon (97103) v1wmwmbB340
Cla97C04G076950Wax gourdwgowmbB037
Cla97C04G076950Wax gourdwgowmbB386