CmaCh03G011500 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G011500
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSmall nuclear ribonucleoprotein G, putative
LocationCma_Chr03 : 7753301 .. 7754645 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTTCATTAATTAGGGTTTTTTTTTTTTCCATCTCTCCGTGCTCTGTTCTGCAAAAACCTTTTCACGTCTCTTTCGTTCGCTATACACCATGAGTAGGGCAGGCCAGCCTCCGGATCTCAAAAAGTAAGTGCATTTTAACTTTTATCTTGTTCATCGTAATTTCGTTTCGATTAGTTCAACTATTTTCATTTGGTTCTCACTTTCCACTTCTTCTTGCAGATACATGGACAAGAAGCTCCAGAGTAAGCTCTGTTCACCACGCGATTGTTTATCCTATTCGTTGTCGTATTTTTTTCTCTGGCTCAGTTTATTTCTGCAAAAGTTGGTCGAGAAATGACATATTTCTTTCTATAAGTCCAGAGTCCGTCAATTCTGTTTGTTTTCTTGGAAGTTATGCCATTTGATTTGCAGTTTCGTTTGCTGCTGATTAGTGTGTATTTTAGCGCGCACTGAAAAAAAACCCATCTGTTTGTAATGTATGGATCCAGAAGTTGAGTCTACTCAGTCTAGGGTTTAGGGTTTAGTATCTACAAATTTTTTCGGAGACCAACGGAGGAAGGATTATGAATTTAGAGCGTTTCATTATTTGGTACTCAAACTTATATTCATTTTTTTTTGTTTTTTTAAGAGAGAAACATAAATTCTTGCTTAGTTATTTAATTAATGGTCATCTGCTCTAAGATTGAAGAAATCTTACATGTCGACTGTATGTGTATACTAATTGATTTTGCTACTGAACTACATTTTTGCAGTAAAACTCAATTCCAATCGGTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAAATGATATTGGCATGGTGGTGCGTAGCAGTTATTTTGTGCTTCAACCCTTTTATGTTTACTTGAATTGTTTAACACCGCCGCTATTGTGCAAGAACTGATTGCCCTTTTTGGTTTCACTTTCAGGTGATCAGAGGCAATAGTGTGGTCACCGTTGAAGCACTTGAACCTGTAAACAGAATGCAATGATGGTGGATGTTGAAATTTAGTTCAATTCTTGCTGAATCTGTTTATAGATTGAGCGGGTAAATCGTTCGGAACTGTAGTATGTATAATTTTGTGATGTTATGGACTTTAGATGGAATTGTTGTACCCCATTCTGGACAGGCGGATTATAAATTCAAACAATGGGATTTCTGTATTATTATGGGAGAAATTTATTGTATTTTGTTAGATCTTCTCACAAAACCTTTCGTTCTTCTTTGCTTCAGCATCAATGTCCATGAACATTGCAATGAATGAATCCCTTATCAATTTAGATTCTGCA

mRNA sequence

TCTTCTTCATTAATTAGGGTTTTTTTTTTTTCCATCTCTCCGTGCTCTGTTCTGCAAAAACCTTTTCACGTCTCTTTCGTTCGCTATACACCATGAGTAGGGCAGGCCAGCCTCCGGATCTCAAAAAATACATGGACAAGAAGCTCCAGATAAAACTCAATTCCAATCGGTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAAATGATATTGGCATGGTGGTGATCAGAGGCAATAGTGTGGTCACCGTTGAAGCACTTGAACCTGTAAACAGAATGCAATGATGGTGGATGTTGAAATTTAGTTCAATTCTTGCTGAATCTGTTTATAGATTGAGCGGGTAAATCGTTCGGAACTGTAGTATGTATAATTTTGTGATGTTATGGACTTTAGATGGAATTGTTGTACCCCATTCTGGACAGGCGGATTATAAATTCAAACAATGGGATTTCTGTATTATTATGGGAGAAATTTATTGTATTTTGTTAGATCTTCTCACAAAACCTTTCGTTCTTCTTTGCTTCAGCATCAATGTCCATGAACATTGCAATGAATGAATCCCTTATCAATTTAGATTCTGCA

Coding sequence (CDS)

ATGAGTAGGGCAGGCCAGCCTCCGGATCTCAAAAAATACATGGACAAGAAGCTCCAGATAAAACTCAATTCCAATCGGTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAAATGATATTGGCATGGTGGTGATCAGAGGCAATAGTGTGGTCACCGTTGAAGCACTTGAACCTGTAAACAGAATGCAATGA

Protein sequence

MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
Homology
[Close]
BLAST of CmaCh03G011500 vs. Swiss-Prot
Match: RUXG_ARATH (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 8.9e-34
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NR+V GTLRGFDQFMNLVVDNTVEVNGN+K DIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNS+VTVEALEPV R
Sbjct: 61 VIRGNSIVTVEALEPVGR 78

[Close]
BLAST of CmaCh03G011500 vs. Swiss-Prot
Match: RUXG_MEDSA (Probable small nuclear ribonucleoprotein G OS=Medicago sativa GN=C29 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.2e-31
Identity = 67/76 (88.16%), Postives = 72/76 (94.74%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MS +GQPP LKKYMDK+LQI L +NR++VGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV
Sbjct: 1  MSTSGQPPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60

Query: 61 VIRGNSVVTVEALEPV 77
          VIRGNSVVTVEALEPV
Sbjct: 61 VIRGNSVVTVEALEPV 76

[Close]
BLAST of CmaCh03G011500 vs. Swiss-Prot
Match: RUXG_DROME (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster GN=SNRPG PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-18
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKNDIGM 60
          MS+A  PP++KKYMDK++ +KLN  R V G LRGFD FMN+V+D+TV E   N KN+IGM
Sbjct: 1  MSKA-HPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGM 60

Query: 61 VVIRGNSVVTVEALEPV 77
          VVIRGNS+V VEAL+ V
Sbjct: 61 VVIRGNSIVMVEALDRV 76

[Close]
BLAST of CmaCh03G011500 vs. Swiss-Prot
Match: RUXG_BOVIN (Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 9.0e-18
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKNDIGM 60
          MS+A  PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++N+IGM
Sbjct: 1  MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGM 60

Query: 61 VVIRGNSVVTVEALEPV 77
          VVIRGNS++ +EALE V
Sbjct: 61 VVIRGNSIIMLEALERV 76

[Close]
BLAST of CmaCh03G011500 vs. Swiss-Prot
Match: RUXG_HUMAN (Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 9.0e-18
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKNDIGM 60
          MS+A  PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++N+IGM
Sbjct: 1  MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGM 60

Query: 61 VVIRGNSVVTVEALEPV 77
          VVIRGNS++ +EALE V
Sbjct: 61 VVIRGNSIIMLEALERV 76

[Close]
BLAST of CmaCh03G011500 vs. TrEMBL
Match: A0A0A0KHH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G452700 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-34
Identity = 76/80 (95.00%), Postives = 79/80 (98.75%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NRLV+GTLRGFDQFMNLVVDNTVEVNGNEK DIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of CmaCh03G011500 vs. TrEMBL
Match: A0A059D615_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02588 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.8e-34
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NR+VVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNSVVTVEALEPVNR
Sbjct: 61 VIRGNSVVTVEALEPVNR 78

[Close]
BLAST of CmaCh03G011500 vs. TrEMBL
Match: C6SVH9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G197100 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.8e-34
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NR+VVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNSVVTVEALEPVNR
Sbjct: 61 VIRGNSVVTVEALEPVNR 78

[Close]
BLAST of CmaCh03G011500 vs. TrEMBL
Match: A0A0B2QFC0_GLYSO (Putative small nuclear ribonucleoprotein G OS=Glycine soja GN=glysoja_021535 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.8e-34
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NR+VVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNSVVTVEALEPVNR
Sbjct: 61 VIRGNSVVTVEALEPVNR 78

[Close]
BLAST of CmaCh03G011500 vs. TrEMBL
Match: A0A0D2QB72_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G238900 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 6.2e-34
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NRLVVGTLRGFDQFMNLVVDNTVEVNGNEK DIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPV RMQ
Sbjct: 61 VIRGNSVVTVEALEPVGRMQ 80

[Close]
BLAST of CmaCh03G011500 vs. TAIR10
Match: AT2G23930.1 (AT2G23930.1 probable small nuclear ribonucleoprotein G)

HSP 1 Score: 143.7 bits (361), Expect = 5.0e-35
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NR+V GTLRGFDQFMNLVVDNTVEVNGN+K DIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNS+VTVEALEPV R
Sbjct: 61 VIRGNSIVTVEALEPVGR 78

[Close]
BLAST of CmaCh03G011500 vs. TAIR10
Match: AT3G11500.1 (AT3G11500.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 143.3 bits (360), Expect = 6.6e-35
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NR+VVGTLRGFDQFMNLVVDNTVEVNG++K DIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNS+VTVEALEPV R
Sbjct: 61 VIRGNSIVTVEALEPVGR 78

[Close]
BLAST of CmaCh03G011500 vs. TAIR10
Match: AT2G03870.2 (AT2G03870.2 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 53.9 bits (128), Expect = 5.2e-08
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1 

Query: 9  DLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKNDIGM 68
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69

Query: 69 VVIRGNSVVTV 71
          +V RG +V+ V
Sbjct: 70 IVCRGTAVMLV 80

[Close]
BLAST of CmaCh03G011500 vs. TAIR10
Match: AT3G14080.1 (AT3G14080.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 49.7 bits (117), Expect = 9.9e-07
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 10 LKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVE--VNGNEKNDI--GMVVIRGN 69
          L  Y+D+KL + L   R ++GTLR FDQF N V++   E  + G +  DI  G+ VIRG 
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74

Query: 70 SVVTVEALE 75
          +VV +  L+
Sbjct: 75 NVVLIGELD 83

[Close]
BLAST of CmaCh03G011500 vs. NCBI nr
Match: gi|449451158|ref|XP_004143329.1| (PREDICTED: probable small nuclear ribonucleoprotein G [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.3e-34
Identity = 76/80 (95.00%), Postives = 79/80 (98.75%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NRLV+GTLRGFDQFMNLVVDNTVEVNGNEK DIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]
BLAST of CmaCh03G011500 vs. NCBI nr
Match: gi|356505386|ref|XP_003521472.1| (PREDICTED: probable small nuclear ribonucleoprotein G [Glycine max])

HSP 1 Score: 151.4 bits (381), Expect = 6.8e-34
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NR+VVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNSVVTVEALEPVNR
Sbjct: 61 VIRGNSVVTVEALEPVNR 78

[Close]
BLAST of CmaCh03G011500 vs. NCBI nr
Match: gi|823136790|ref|XP_012468163.1| (PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii])

HSP 1 Score: 151.0 bits (380), Expect = 8.9e-34
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NRLVVGTLRGFDQFMNLVVDNTVEVNGNEK DIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPV RMQ
Sbjct: 61 VIRGNSVVTVEALEPVGRMQ 80

[Close]
BLAST of CmaCh03G011500 vs. NCBI nr
Match: gi|1012359953|gb|KYP71137.1| (putative small nuclear ribonucleoprotein G [Cajanus cajan])

HSP 1 Score: 151.0 bits (380), Expect = 8.9e-34
Identity = 74/78 (94.87%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NR++VGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNSVVTVEALEPVNR
Sbjct: 61 VIRGNSVVTVEALEPVNR 78

[Close]
BLAST of CmaCh03G011500 vs. NCBI nr
Match: gi|255578959|ref|XP_002530332.1| (PREDICTED: probable small nuclear ribonucleoprotein G [Ricinus communis])

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-33
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 1 

Query: 1  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
          MSR+GQPPDLKKYMDKKLQIKLN+NR+VVGTLRGFDQFMNLVVDNTVEVNG+EK DIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 81
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

The following BLAST results are available for this feature:
BLAST of CmaCh03G011500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RUXG_ARATH8.9e-3489.74Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 ... [more]
RUXG_MEDSA3.2e-3188.16Probable small nuclear ribonucleoprotein G OS=Medicago sativa GN=C29 PE=3 SV=1[more]
RUXG_DROME1.4e-1863.64Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster GN=SNRPG P... [more]
RUXG_BOVIN9.0e-1862.34Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3 SV=1[more]
RUXG_HUMAN9.0e-1862.34Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1 SV=1[more]
BLAST of CmaCh03G011500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHH9_CUCSA1.6e-3495.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G452700 PE=4 SV=1[more]
A0A059D615_EUCGR4.8e-3496.15Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02588 PE=4 SV=1[more]
C6SVH9_SOYBN4.8e-3496.15Uncharacterized protein OS=Glycine max GN=GLYMA_03G197100 PE=2 SV=1[more]
A0A0B2QFC0_GLYSO4.8e-3496.15Putative small nuclear ribonucleoprotein G OS=Glycine soja GN=glysoja_021535 PE=... [more]
A0A0D2QB72_GOSRA6.2e-3495.00Uncharacterized protein OS=Gossypium raimondii GN=B456_002G238900 PE=4 SV=1[more]
BLAST of CmaCh03G011500 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G23930.15.0e-3589.74 probable small nuclear ribonucleoprotein G[more]
AT3G11500.16.6e-3589.74 Small nuclear ribonucleoprotein family protein[more]
AT2G03870.25.2e-0839.44 Small nuclear ribonucleoprotein family protein[more]
AT3G14080.19.9e-0742.03 Small nuclear ribonucleoprotein family protein[more]
BLAST of CmaCh03G011500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451158|ref|XP_004143329.1|2.3e-3495.00PREDICTED: probable small nuclear ribonucleoprotein G [Cucumis sativus][more]
gi|356505386|ref|XP_003521472.1|6.8e-3496.15PREDICTED: probable small nuclear ribonucleoprotein G [Glycine max][more]
gi|823136790|ref|XP_012468163.1|8.9e-3495.00PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii][more]
gi|1012359953|gb|KYP71137.1|8.9e-3494.87putative small nuclear ribonucleoprotein G [Cajanus cajan][more]
gi|255578959|ref|XP_002530332.1|1.2e-3393.75PREDICTED: probable small nuclear ribonucleoprotein G [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR017132Lsm7
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005732small nucleolar ribonucleoprotein complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005575 cellular_component
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0043186 P granule
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G011500.1CmaCh03G011500.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 9..71
score: 7.9
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 8..72
score: 2.3
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 9..77
score: 1.01
IPR017132Sm-like protein Lsm7/snRNP-GPIRPIRSF037188Lsm7coord: 6..80
score: 9.1
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 8..70
score: 3.0
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 1..79
score: 8.5
NoneNo IPR availablePANTHERPTHR10553:SF9SUBFAMILY NOT NAMEDcoord: 1..79
score: 8.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh03G011500Cucsa.083440Cucumber (Gy14) v1cgycmaB0153
CmaCh03G011500Cla018404Watermelon (97103) v1cmawmB639
CmaCh03G011500Csa6G452700Cucumber (Chinese Long) v2cmacuB681
CmaCh03G011500MELO3C024552Melon (DHL92) v3.5.1cmameB609
CmaCh03G011500ClCG04G010110Watermelon (Charleston Gray)cmawcgB590
CmaCh03G011500CSPI06G25550Wild cucumber (PI 183967)cmacpiB689
CmaCh03G011500CmoCh07G008800Cucurbita moschata (Rifu)cmacmoB667
CmaCh03G011500CmoCh03G011400Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G011500Lsi01G012150Bottle gourd (USVL1VR-Ls)cmalsiB597
CmaCh03G011500Cp4.1LG10g03880Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G011500Cp4.1LG19g04920Cucurbita pepo (Zucchini)cmacpeB671
CmaCh03G011500MELO3C024552.2Melon (DHL92) v3.6.1cmamedB695
CmaCh03G011500CsaV3_6G040740Cucumber (Chinese Long) v3cmacucB0810
CmaCh03G011500Cla97C04G076950Watermelon (97103) v2cmawmbB689
CmaCh03G011500Bhi03G001414Wax gourdcmawgoB0792
CmaCh03G011500CsGy6G025000Cucumber (Gy14) v2cgybcmaB831
CmaCh03G011500Carg05360Silver-seed gourdcarcmaB1125
CmaCh03G011500Carg10487Silver-seed gourdcarcmaB0333
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh03G011500CmaCh07G008480Cucurbita maxima (Rimu)cmacmaB523
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G011500Wax gourdcmawgoB0777
CmaCh03G011500Cucurbita maxima (Rimu)cmacmaB498
CmaCh03G011500Cucurbita maxima (Rimu)cmacmaB521
CmaCh03G011500Cucumber (Gy14) v1cgycmaB0680
CmaCh03G011500Cucurbita moschata (Rifu)cmacmoB640
CmaCh03G011500Cucurbita moschata (Rifu)cmacmoB651
CmaCh03G011500Cucurbita moschata (Rifu)cmacmoB665
CmaCh03G011500Wild cucumber (PI 183967)cmacpiB667
CmaCh03G011500Cucumber (Chinese Long) v2cmacuB659
CmaCh03G011500Melon (DHL92) v3.5.1cmameB600
CmaCh03G011500Watermelon (Charleston Gray)cmawcgB570
CmaCh03G011500Watermelon (Charleston Gray)cmawcgB582
CmaCh03G011500Watermelon (97103) v1cmawmB612
CmaCh03G011500Watermelon (97103) v1cmawmB645
CmaCh03G011500Cucurbita pepo (Zucchini)cmacpeB681
CmaCh03G011500Cucurbita pepo (Zucchini)cmacpeB689
CmaCh03G011500Bottle gourd (USVL1VR-Ls)cmalsiB594
CmaCh03G011500Bottle gourd (USVL1VR-Ls)cmalsiB609
CmaCh03G011500Cucumber (Gy14) v2cgybcmaB406
CmaCh03G011500Melon (DHL92) v3.6.1cmamedB684
CmaCh03G011500Silver-seed gourdcarcmaB0348
CmaCh03G011500Silver-seed gourdcarcmaB1269
CmaCh03G011500Cucumber (Chinese Long) v3cmacucB0788
CmaCh03G011500Watermelon (97103) v2cmawmbB671
CmaCh03G011500Watermelon (97103) v2cmawmbB680