CmoCh07G006900 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G006900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMortality factor 4-like protein 1
LocationCmo_Chr07 : 3115448 .. 3115852 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAAACATCCGGCGATGGCAGTTCCCGCTCTATTCCGCACTCGTTAGAGCGCCACGCGACCTCACGAAGAAGGACCCGACACTCGTGTTTGGCTGGTTCATTTGCCATCTCTGGGTGTTAGAGAATGGTAAACTCATCCAAGGACGACGCAGCCACCGACGGCGACATGTCCAGCGGTGGTTCTCCACCCTCCAATTCAAGCCTTTACTCCGAAGGAGAGAAGGTCCTTGCCTATCACGGCCCTCGCATCTATGAAGCCAAGGTACATCTCTTTTTACGCTCTTGTTTACGATTTGCCTTTGGATTTCTGTTTAAAATTCTCCGAAGCATTGAATTGTTAGCTCGCCTTTCGGTTGGCGCATCTGGTTTAGAGAGGAAAAGGGGGATAATGCTTGTGTAA

mRNA sequence

ATGAAAAAAACATCCGGCGATGGCAGTTCCCGCTCTATTCCGCACTCGTTAGAGCGCCACGCGACCTCACGAAGAAGGACCCGACACTCGTGTTTGGCTGGTTCATTTGCCATCTCTGGAATGGTAAACTCATCCAAGGACGACGCAGCCACCGACGGCGACATGTCCAGCGGTGGTTCTCCACCCTCCAATTCAAGCCTTTACTCCGAAGGAGAGAAGGTCCTTGCCTATCACGGCCCTCGCATCTATGAAGCCAAGGTACATCTCTTTTTACGCTCTTGTTTACGATTTGCCTTTGGATTTCTGTTTAAAATTCTCCGAAGCATTGAATTGTTAGCTCGCCTTTCGGTTGGCGCATCTGGTTTAGAGAGGAAAAGGGGGATAATGCTTGTGTAA

Coding sequence (CDS)

ATGAAAAAAACATCCGGCGATGGCAGTTCCCGCTCTATTCCGCACTCGTTAGAGCGCCACGCGACCTCACGAAGAAGGACCCGACACTCGTGTTTGGCTGGTTCATTTGCCATCTCTGGAATGGTAAACTCATCCAAGGACGACGCAGCCACCGACGGCGACATGTCCAGCGGTGGTTCTCCACCCTCCAATTCAAGCCTTTACTCCGAAGGAGAGAAGGTCCTTGCCTATCACGGCCCTCGCATCTATGAAGCCAAGGTACATCTCTTTTTACGCTCTTGTTTACGATTTGCCTTTGGATTTCTGTTTAAAATTCTCCGAAGCATTGAATTGTTAGCTCGCCTTTCGGTTGGCGCATCTGGTTTAGAGAGGAAAAGGGGGATAATGCTTGTGTAA
Homology
[Close]
BLAST of CmoCh07G006900 vs. Swiss-Prot
Match: MRG1_ARATH (Protein MRG1 OS=Arabidopsis thaliana GN=MRG1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.6e-09
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSS-LYSEGEKVLAYHGPRIYEAKV 88
          M +SSK++ A+DGD +SGG+ PSN   L+SEGE+VLAYHGPR+Y AKV
Sbjct: 1  MGSSSKEETASDGDTASGGASPSNDGRLFSEGERVLAYHGPRVYGAKV 48

[Close]
BLAST of CmoCh07G006900 vs. TrEMBL
Match: M5VYX4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007902mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-12
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 

Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAK 87
          M NSS+DD+ TDGD SSG +PPSNSSLYSEGEK+LAYHGPRIYEAK
Sbjct: 1  MANSSRDDSPTDGDTSSGDAPPSNSSLYSEGEKILAYHGPRIYEAK 46

[Close]
BLAST of CmoCh07G006900 vs. TrEMBL
Match: A0A0A0KGE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491700 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-12
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1 

Query: 44 SSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          S  DDAATDGDMSSG SPPSN+SLYSEGEKVLAYHGPRIYEAKV
Sbjct: 32 SPTDDAATDGDMSSGDSPPSNTSLYSEGEKVLAYHGPRIYEAKV 75

[Close]
BLAST of CmoCh07G006900 vs. TrEMBL
Match: A0A151U415_CAJCA (Mortality factor 4-like protein 1 OS=Cajanus cajan GN=KK1_006679 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.3e-11
Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 41  MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKVHLFLRSCLRFAFG 100
           M NSSKDD+AT GD S+G   PSNS++YS+GEKVLAYHGPRIYEAK      S L F   
Sbjct: 1   MGNSSKDDSATSGDASAGDVQPSNSAVYSDGEKVLAYHGPRIYEAKAS--FSSPLPFLSN 60

Query: 101 FLFKILRSIE 111
           FLF  +R  E
Sbjct: 61  FLFPQIRKSE 68

[Close]
BLAST of CmoCh07G006900 vs. TrEMBL
Match: A0A0D2S7H0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G055700 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.3e-11
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          M +SSK++ ATDGD SSG +PPSNS+L+SEGE+VLAYHGPRIYEAKV
Sbjct: 1  MGSSSKEETATDGDTSSGDNPPSNSNLFSEGERVLAYHGPRIYEAKV 47

[Close]
BLAST of CmoCh07G006900 vs. TrEMBL
Match: A0A0D2T9E8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G055700 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.3e-11
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          M +SSK++ ATDGD SSG +PPSNS+L+SEGE+VLAYHGPRIYEAKV
Sbjct: 1  MGSSSKEETATDGDTSSGDNPPSNSNLFSEGERVLAYHGPRIYEAKV 47

[Close]
BLAST of CmoCh07G006900 vs. TAIR10
Match: AT4G37280.1 (AT4G37280.1 MRG family protein)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-10
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSS-LYSEGEKVLAYHGPRIYEAKV 88
          M +SSK++ A+DGD +SGG+ PSN   L+SEGE+VLAYHGPR+Y AKV
Sbjct: 1  MGSSSKEETASDGDTASGGASPSNDGRLFSEGERVLAYHGPRVYGAKV 48

[Close]
BLAST of CmoCh07G006900 vs. NCBI nr
Match: gi|659079567|ref|XP_008440325.1| (PREDICTED: mortality factor 4-like protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNSSKDDAATDGDMSSG SPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSSKDDAATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]
BLAST of CmoCh07G006900 vs. NCBI nr
Match: gi|659079569|ref|XP_008440326.1| (PREDICTED: mortality factor 4-like protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNSSKDDAATDGDMSSG SPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSSKDDAATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]
BLAST of CmoCh07G006900 vs. NCBI nr
Match: gi|449448286|ref|XP_004141897.1| (PREDICTED: mortality factor 4-like protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-15
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNSSKDDAATDGDMSSG SPPSN+SLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSSKDDAATDGDMSSGDSPPSNTSLYSEGEKVLAYHGPRIYEAKV 47

[Close]
BLAST of CmoCh07G006900 vs. NCBI nr
Match: gi|778718507|ref|XP_011657879.1| (PREDICTED: mortality factor 4-like protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-15
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNSSKDDAATDGDMSSG SPPSN+SLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSSKDDAATDGDMSSGDSPPSNTSLYSEGEKVLAYHGPRIYEAKV 47

[Close]
BLAST of CmoCh07G006900 vs. NCBI nr
Match: gi|645220104|ref|XP_008238734.1| (PREDICTED: LOW QUALITY PROTEIN: nuA4 complex subunit EAF3 homolog [Prunus mume])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          M NSS+DD+ TDGD SSG +PPSNSSLYSEGEK+LAYHGPRIYEAKV
Sbjct: 1  MANSSRDDSPTDGDTSSGDAPPSNSSLYSEGEKILAYHGPRIYEAKV 47

The following BLAST results are available for this feature:
BLAST of CmoCh07G006900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MRG1_ARATH5.6e-0964.58Protein MRG1 OS=Arabidopsis thaliana GN=MRG1 PE=1 SV=1[more]
BLAST of CmoCh07G006900 vs. TrEMBL
Match NameE-valueIdentityDescription
M5VYX4_PRUPE2.2e-1282.61Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007902mg PE=4 SV=1[more]
A0A0A0KGE5_CUCSA2.2e-1290.91Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491700 PE=4 SV=1[more]
A0A151U415_CAJCA9.3e-1161.43Mortality factor 4-like protein 1 OS=Cajanus cajan GN=KK1_006679 PE=4 SV=1[more]
A0A0D2S7H0_GOSRA9.3e-1176.60Uncharacterized protein OS=Gossypium raimondii GN=B456_007G055700 PE=4 SV=1[more]
A0A0D2T9E8_GOSRA9.3e-1176.60Uncharacterized protein OS=Gossypium raimondii GN=B456_007G055700 PE=4 SV=1[more]
BLAST of CmoCh07G006900 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G37280.13.1e-1064.58 MRG family protein[more]
BLAST of CmoCh07G006900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659079567|ref|XP_008440325.1|1.4e-1597.87PREDICTED: mortality factor 4-like protein 1 isoform X1 [Cucumis melo][more]
gi|659079569|ref|XP_008440326.1|1.4e-1597.87PREDICTED: mortality factor 4-like protein 1 isoform X2 [Cucumis melo][more]
gi|449448286|ref|XP_004141897.1|3.1e-1595.74PREDICTED: mortality factor 4-like protein 1 isoform X2 [Cucumis sativus][more]
gi|778718507|ref|XP_011657879.1|3.1e-1595.74PREDICTED: mortality factor 4-like protein 1 isoform X1 [Cucumis sativus][more]
gi|645220104|ref|XP_008238734.1|1.1e-1282.98PREDICTED: LOW QUALITY PROTEIN: nuA4 complex subunit EAF3 homolog [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006325 chromatin organization
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G006900.1CmoCh07G006900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.30.30.270coord: 63..87
score: 6.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G006900Cucsa.102720Cucumber (Gy14) v1cgycmoB0233
CmoCh07G006900CmaCh07G006780Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G006900CmaCh03G009520Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G006900Cla013981Watermelon (97103) v1cmowmB816
CmoCh07G006900ClCG01G017100Watermelon (Charleston Gray)cmowcgB755
CmoCh07G006900CSPI06G28420Wild cucumber (PI 183967)cmocpiB873
CmoCh07G006900Lsi01G009470Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G006900Cp4.1LG19g10950Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G006900Cp4.1LG10g02430Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G006900MELO3C007587.2Melon (DHL92) v3.6.1cmomedB896
CmoCh07G006900CsaV3_6G043580Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G006900Cla97C01G016250Watermelon (97103) v2cmowmbB849
CmoCh07G006900Bhi03G000731Wax gourdcmowgoB1063
CmoCh07G006900CsGy6G027910Cucumber (Gy14) v2cgybcmoB843
CmoCh07G006900Carg05197Silver-seed gourdcarcmoB1100
CmoCh07G006900Carg00819Silver-seed gourdcarcmoB0554
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh07G006900CmoCh03G009760Cucurbita moschata (Rifu)cmocmoB455
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G006900Bottle gourd (USVL1VR-Ls)cmolsiB789
CmoCh07G006900Bottle gourd (USVL1VR-Ls)cmolsiB795
CmoCh07G006900Cucumber (Gy14) v2cgybcmoB249
CmoCh07G006900Cucumber (Gy14) v2cgybcmoB543
CmoCh07G006900Melon (DHL92) v3.6.1cmomedB878
CmoCh07G006900Melon (DHL92) v3.6.1cmomedB885
CmoCh07G006900Silver-seed gourdcarcmoB0264
CmoCh07G006900Silver-seed gourdcarcmoB0516
CmoCh07G006900Silver-seed gourdcarcmoB1048
CmoCh07G006900Cucumber (Chinese Long) v3cmocucB0990
CmoCh07G006900Cucumber (Chinese Long) v3cmocucB1006
CmoCh07G006900Watermelon (97103) v2cmowmbB872
CmoCh07G006900Watermelon (97103) v2cmowmbB876
CmoCh07G006900Wax gourdcmowgoB1044
CmoCh07G006900Wax gourdcmowgoB1078
CmoCh07G006900Melon (DHL92) v3.5.1cmomeB793
CmoCh07G006900Cucurbita moschata (Rifu)cmocmoB131
CmoCh07G006900Cucurbita moschata (Rifu)cmocmoB037
CmoCh07G006900Cucurbita moschata (Rifu)cmocmoB164
CmoCh07G006900Cucurbita moschata (Rifu)cmocmoB296
CmoCh07G006900Cucurbita moschata (Rifu)cmocmoB376
CmoCh07G006900Cucurbita moschata (Rifu)cmocmoB477
CmoCh07G006900Cucurbita moschata (Rifu)cmocmoB480
CmoCh07G006900Cucumber (Gy14) v1cgycmoB0633
CmoCh07G006900Cucumber (Gy14) v1cgycmoB0970
CmoCh07G006900Cucumber (Gy14) v1cgycmoB1095
CmoCh07G006900Cucurbita maxima (Rimu)cmacmoB065
CmoCh07G006900Cucurbita maxima (Rimu)cmacmoB161
CmoCh07G006900Cucurbita maxima (Rimu)cmacmoB204
CmoCh07G006900Cucurbita maxima (Rimu)cmacmoB790
CmoCh07G006900Wild cucumber (PI 183967)cmocpiB847
CmoCh07G006900Wild cucumber (PI 183967)cmocpiB849
CmoCh07G006900Wild cucumber (PI 183967)cmocpiB864
CmoCh07G006900Cucumber (Chinese Long) v2cmocuB837
CmoCh07G006900Cucumber (Chinese Long) v2cmocuB839
CmoCh07G006900Cucumber (Chinese Long) v2cmocuB856
CmoCh07G006900Cucumber (Chinese Long) v2cmocuB865
CmoCh07G006900Melon (DHL92) v3.5.1cmomeB773
CmoCh07G006900Melon (DHL92) v3.5.1cmomeB781
CmoCh07G006900Watermelon (Charleston Gray)cmowcgB774
CmoCh07G006900Watermelon (Charleston Gray)cmowcgB777
CmoCh07G006900Watermelon (97103) v1cmowmB807
CmoCh07G006900Watermelon (97103) v1cmowmB813
CmoCh07G006900Cucurbita pepo (Zucchini)cmocpeB809
CmoCh07G006900Cucurbita pepo (Zucchini)cmocpeB815
CmoCh07G006900Cucurbita pepo (Zucchini)cmocpeB827