Cla013981 (gene) Watermelon (97103) v1

Overview
NameCla013981
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 27077928 .. 27078344 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAGATAGGGGAAAAAAAGATTAAAAAAAAGAGGAAAAACAGCGGCGATGGCAGTTCCCGCTCTATTCCGCAGTCGTCAGAGCCCCACGCGAGCTCACGAGGAAGTGGCCGAGCCTCGTATCTGGCTGGTTCTCTTGCTATCTCAGAGTGTTCGAGAATGGTAAACTCCTCCAAGGACGACACAGCCACCGACGGCGACATGTCCAGCGGTGATTCTCCACCCTCCAATTCCAGCCTCTACTCCGAAGGCGAGAAGGTTCTTGCCTATCACGGTCCCCGCATCTATGAAGCCAAGGTACCTTCTCTTCTACGCTCTTGTTTTCGAATTCGACTTTCAATTCCTCTTTCTTTTTCTTTAATCTTCCCTCGAGCATTGAGCGAGCTCGTCTTTCGGTTGGCGCATCTAGTTTAG

mRNA sequence

ATGATGAAGATAGGGGAAAAAAAGATTAAAAAAAAGAGGAAAAACAGCGGCGATGGCAGTTCCCGCTCTATTCCGCAGTCGTCAGAGCCCCACGCGAGCTCACGAGGAAGTGGCCGAGCCTCGTATCTGGCTGGTTCTCTTGCTATCTCAGAGTGTTCGAGAATGGTAAACTCCTCCAAGGACGACACAGCCACCGACGGCGACATGTCCAGCGGTGATTCTCCACCCTCCAATTCCAGCCTCTACTCCGAAGGCGAGAAGGTTCTTGCCTATCACGGTCCCCGCATCTATGAAGCCAAGGTACCTTCTCTTCTACGCTCTTGTTTTCGAATTCGACTTTCAATTCCTCTTTCTTTTTCTTTAATCTTCCCTCGAGCATTGAGCGAGCTCGTCTTTCGGTTGGCGCATCTAGTTTAG

Coding sequence (CDS)

ATGATGAAGATAGGGGAAAAAAAGATTAAAAAAAAGAGGAAAAACAGCGGCGATGGCAGTTCCCGCTCTATTCCGCAGTCGTCAGAGCCCCACGCGAGCTCACGAGGAAGTGGCCGAGCCTCGTATCTGGCTGGTTCTCTTGCTATCTCAGAGTGTTCGAGAATGGTAAACTCCTCCAAGGACGACACAGCCACCGACGGCGACATGTCCAGCGGTGATTCTCCACCCTCCAATTCCAGCCTCTACTCCGAAGGCGAGAAGGTTCTTGCCTATCACGGTCCCCGCATCTATGAAGCCAAGGTACCTTCTCTTCTACGCTCTTGTTTTCGAATTCGACTTTCAATTCCTCTTTCTTTTTCTTTAATCTTCCCTCGAGCATTGAGCGAGCTCGTCTTTCGGTTGGCGCATCTAGTTTAG

Protein sequence

MMKIGEKKIKKKRKNSGDGSSRSIPQSSEPHASSRGSGRASYLAGSLAISECSRMVNSSKDDTATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKVPSLLRSCFRIRLSIPLSFSLIFPRALSELVFRLAHLV
Homology
[Close]
BLAST of Cla013981 vs. Swiss-Prot
Match: MRG1_ARATH (Protein MRG1 OS=Arabidopsis thaliana GN=MRG1 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.0e-10
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 

Query: 55  MVNSSKDDTATDGDMSSGDSPPSNSS-LYSEGEKVLAYHGPRIYEAKV 102
           M +SSK++TA+DGD +SG + PSN   L+SEGE+VLAYHGPR+Y AKV
Sbjct: 1   MGSSSKEETASDGDTASGGASPSNDGRLFSEGERVLAYHGPRVYGAKV 48

[Close]
BLAST of Cla013981 vs. TrEMBL
Match: M5VYX4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007902mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-14
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1 

Query: 55  MVNSSKDDTATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAK 101
           M NSS+DD+ TDGD SSGD+PPSNSSLYSEGEK+LAYHGPRIYEAK
Sbjct: 1   MANSSRDDSPTDGDTSSGDAPPSNSSLYSEGEKILAYHGPRIYEAK 46

[Close]
BLAST of Cla013981 vs. TrEMBL
Match: A0A0A0KGE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491700 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.2e-14
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1 

Query: 58  SSKDDTATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 102
           S  DD ATDGDMSSGDSPPSN+SLYSEGEKVLAYHGPRIYEAKV
Sbjct: 32  SPTDDAATDGDMSSGDSPPSNTSLYSEGEKVLAYHGPRIYEAKV 75

[Close]
BLAST of Cla013981 vs. TrEMBL
Match: A0A0D2S7H0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G055700 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-13
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 1 

Query: 55  MVNSSKDDTATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 102
           M +SSK++TATDGD SSGD+PPSNS+L+SEGE+VLAYHGPRIYEAKV
Sbjct: 1   MGSSSKEETATDGDTSSGDNPPSNSNLFSEGERVLAYHGPRIYEAKV 47

[Close]
BLAST of Cla013981 vs. TrEMBL
Match: A0A0D2T9E8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G055700 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-13
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 1 

Query: 55  MVNSSKDDTATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 102
           M +SSK++TATDGD SSGD+PPSNS+L+SEGE+VLAYHGPRIYEAKV
Sbjct: 1   MGSSSKEETATDGDTSSGDNPPSNSNLFSEGERVLAYHGPRIYEAKV 47

[Close]
BLAST of Cla013981 vs. TrEMBL
Match: A0A0D2SEM2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G055700 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-13
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 1 

Query: 55  MVNSSKDDTATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 102
           M +SSK++TATDGD SSGD+PPSNS+L+SEGE+VLAYHGPRIYEAKV
Sbjct: 1   MGSSSKEETATDGDTSSGDNPPSNSNLFSEGERVLAYHGPRIYEAKV 47

[Close]
BLAST of Cla013981 vs. NCBI nr
Match: gi|659079567|ref|XP_008440325.1| (PREDICTED: mortality factor 4-like protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 4.5e-17
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 55  MVNSSKDDTATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 102
           MVNSSKDD ATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1   MVNSSKDDAATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]
BLAST of Cla013981 vs. NCBI nr
Match: gi|659079569|ref|XP_008440326.1| (PREDICTED: mortality factor 4-like protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 4.5e-17
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 55  MVNSSKDDTATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 102
           MVNSSKDD ATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1   MVNSSKDDAATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]
BLAST of Cla013981 vs. NCBI nr
Match: gi|449448286|ref|XP_004141897.1| (PREDICTED: mortality factor 4-like protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 55  MVNSSKDDTATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 102
           MVNSSKDD ATDGDMSSGDSPPSN+SLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1   MVNSSKDDAATDGDMSSGDSPPSNTSLYSEGEKVLAYHGPRIYEAKV 47

[Close]
BLAST of Cla013981 vs. NCBI nr
Match: gi|778718507|ref|XP_011657879.1| (PREDICTED: mortality factor 4-like protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 55  MVNSSKDDTATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 102
           MVNSSKDD ATDGDMSSGDSPPSN+SLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1   MVNSSKDDAATDGDMSSGDSPPSNTSLYSEGEKVLAYHGPRIYEAKV 47

[Close]
BLAST of Cla013981 vs. NCBI nr
Match: gi|645220104|ref|XP_008238734.1| (PREDICTED: LOW QUALITY PROTEIN: nuA4 complex subunit EAF3 homolog [Prunus mume])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 55  MVNSSKDDTATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 102
           M NSS+DD+ TDGD SSGD+PPSNSSLYSEGEK+LAYHGPRIYEAKV
Sbjct: 1   MANSSRDDSPTDGDTSSGDAPPSNSSLYSEGEKILAYHGPRIYEAKV 47

The following BLAST results are available for this feature:
BLAST of Cla013981 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MRG1_ARATH7.0e-1064.58Protein MRG1 OS=Arabidopsis thaliana GN=MRG1 PE=1 SV=1[more]
BLAST of Cla013981 vs. TrEMBL
Match NameE-valueIdentityDescription
M5VYX4_PRUPE2.5e-1484.78Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007902mg PE=4 SV=1[more]
A0A0A0KGE5_CUCSA7.2e-1490.91Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491700 PE=4 SV=1[more]
A0A0D2S7H0_GOSRA2.7e-1380.85Uncharacterized protein OS=Gossypium raimondii GN=B456_007G055700 PE=4 SV=1[more]
A0A0D2T9E8_GOSRA2.7e-1380.85Uncharacterized protein OS=Gossypium raimondii GN=B456_007G055700 PE=4 SV=1[more]
A0A0D2SEM2_GOSRA2.7e-1380.85Uncharacterized protein OS=Gossypium raimondii GN=B456_007G055700 PE=4 SV=1[more]
BLAST of Cla013981 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659079567|ref|XP_008440325.1|4.5e-1797.87PREDICTED: mortality factor 4-like protein 1 isoform X1 [Cucumis melo][more]
gi|659079569|ref|XP_008440326.1|4.5e-1797.87PREDICTED: mortality factor 4-like protein 1 isoform X2 [Cucumis melo][more]
gi|449448286|ref|XP_004141897.1|1.0e-1695.74PREDICTED: mortality factor 4-like protein 1 isoform X2 [Cucumis sativus][more]
gi|778718507|ref|XP_011657879.1|1.0e-1695.74PREDICTED: mortality factor 4-like protein 1 isoform X1 [Cucumis sativus][more]
gi|645220104|ref|XP_008238734.1|1.2e-1485.11PREDICTED: LOW QUALITY PROTEIN: nuA4 complex subunit EAF3 homolog [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006325 chromatin organization
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013981Cla013981.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.30.30.270coord: 77..102
score: 4.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla013981CmoCh07G006900Cucurbita moschata (Rifu)cmowmB816
Cla013981Cp4.1LG10g02430Cucurbita pepo (Zucchini)cpewmB073
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla013981Silver-seed gourdcarwmB0176
Cla013981Silver-seed gourdcarwmB0407
Cla013981Silver-seed gourdcarwmB0805
Cla013981Cucumber (Chinese Long) v3cucwmB150
Cla013981Cucumber (Chinese Long) v3cucwmB526
Cla013981Cucumber (Chinese Long) v3cucwmB625
Cla013981Watermelon (97103) v2wmwmbB234
Cla013981Watermelon (97103) v2wmwmbB280
Cla013981Wax gourdwgowmB339
Cla013981Wax gourdwgowmB426
Cla013981Watermelon (97103) v1wmwmB066
Cla013981Watermelon (97103) v1wmwmB121
Cla013981Cucumber (Gy14) v1cgywmB136
Cla013981Cucumber (Gy14) v1cgywmB425
Cla013981Cucumber (Gy14) v1cgywmB711
Cla013981Cucurbita maxima (Rimu)cmawmB497
Cla013981Cucurbita maxima (Rimu)cmawmB520
Cla013981Cucurbita maxima (Rimu)cmawmB570
Cla013981Cucurbita maxima (Rimu)cmawmB632
Cla013981Cucurbita maxima (Rimu)cmawmB763
Cla013981Cucurbita maxima (Rimu)cmawmB826
Cla013981Cucurbita moschata (Rifu)cmowmB152
Cla013981Cucurbita moschata (Rifu)cmowmB510
Cla013981Cucurbita moschata (Rifu)cmowmB565
Cla013981Cucurbita moschata (Rifu)cmowmB623
Cla013981Cucurbita moschata (Rifu)cmowmB756
Cla013981Melon (DHL92) v3.5.1mewmB237
Cla013981Melon (DHL92) v3.5.1mewmB322
Cla013981Melon (DHL92) v3.5.1mewmB533
Cla013981Melon (DHL92) v3.5.1mewmB570
Cla013981Watermelon (Charleston Gray)wcgwmB141
Cla013981Watermelon (Charleston Gray)wcgwmB418
Cla013981Cucumber (Chinese Long) v2cuwmB137
Cla013981Cucumber (Chinese Long) v2cuwmB327
Cla013981Cucumber (Chinese Long) v2cuwmB500
Cla013981Cucumber (Chinese Long) v2cuwmB594
Cla013981Cucurbita pepo (Zucchini)cpewmB112
Cla013981Cucurbita pepo (Zucchini)cpewmB285
Cla013981Cucurbita pepo (Zucchini)cpewmB482
Cla013981Cucurbita pepo (Zucchini)cpewmB720
Cla013981Bottle gourd (USVL1VR-Ls)lsiwmB144
Cla013981Bottle gourd (USVL1VR-Ls)lsiwmB488
Cla013981Cucumber (Gy14) v2cgybwmB131
Cla013981Cucumber (Gy14) v2cgybwmB468
Cla013981Melon (DHL92) v3.6.1medwmB319
Cla013981Melon (DHL92) v3.6.1medwmB559