CmoCh07G006820 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGAAGAATATAAATATGGTATTTTTATTATTAAAAAGAAAAAAGAAAAAGAAAACATGAATAGAAATATAGTCTTCCTTTTTCTTTTTTGGAAAAAGTCGGGCGGTGGGAGTGGCAGAAAACAAATTCAGGCGACTGCTGGTAAATTTCCCCGCAATAATTGACGCGACAGTTCACGTGGCCAACTGTTATTGGATTGTCGAAATTGGCAAGGGCCCCACTCTCAATCATCCAGCTGTATCCAGTCCCTCTCTCCTTAAAACTAAATTATTGGATCCTAAACCGCGTAACTAATCCTCATTTAGCTGACGTGGCTGGCACCGAATTTCATAACTTAAATTTTAATTTAATTTTTTATCATTTTATTTACTCATTCTCATTTGTTTATACCTAAAAAAGAGAGGAAAAGAAACACTAATGGGCTTTCGACCGTGCTTAAATCTCCCGTATTTACTCATTCTCTACGTGGGCCCTTCTTTTCGCACCCAACGGCTAGTACAGGCCCATTAATAGTGGGCCCCATTTGTCTTACAGGTTCTGTTGTCTTTTCTTTTTTTCTTTTTGTAAATTTATTTTTTAATTTTTTTTAAAAGTGCTTTGAGGTGTTATTTACTGGTCTATATATACACTATTACACCTCGGCCCTTGGATGCATCCACTTCATCATCTACACACGCTCACTCGGTAGACATGGGGAGACAATCTGTGATCGCACTCGTTCTGATCTGCGCTGTCGTTGCCGGTGTCGGTGGTCAGTCTCCTGCTGCAGCTCCGACTACAACACCGGCGACTCCCGCGCCTGTAGCAGCGAAGAATCCACCTCCAGCAGCATCTCCTGTTGTGCCACCGACAAATTCATCTCCCGCTGCCGCTCCCCAAAAGCCGGTCACTCCAGCACCGGTATCTACGCCACCAGCAGTCGCTCCAGTGGCCTCTCCGCCGGCCAGTACTCCTCCAACTGCTTCCGTTCCGGCTAGCTCTCCACCAGCTGCTTCCGTTCCGGCTAGCTCCCCGCCAGCTACCGTTCCAGCGAGCTCTCCGCCGGTTCCAGTTCCGGCCAGTTCTCCACCGGTTCCAGTTCCGGAGAGCTCTCCTCCCGTACCAACTCCGATCGAATCTCCTCCCGCTCCCGAAACTGCTCCTCCTGCTCCGGTCGCATCACCTCCCGCTGAGGTCCCGTCGCCGGCGCCTAGTAAGAAGAAATCGAAGAAGCACAAAGCACCAGCTCCTTCTCCGGCGTTGCTTGGTCCACCTGCTCCACCCTCTGAAGCCCCAGGAGGAAGTGAGGAAGGTCCTACCCCCGCCCCTTCACTGGACGACAAGGTAATTAAATTTTCACCCAAATCTCTGCATTTACCGCCTAAATATTTACCCGCATTGTTAATCTTCTCAAGATCTGCAACATCCCTAAAAAAAATCCGCCATTATCAATATCCACAGCCAAGATCTCTCTATAATTTGGATAAAAATGGCACATCTTAGCGCTCTTAGGGCTGTGTGAATGGCCGCATTTGCTCTACTCGATAACAGAGTGACTAAGCCTAACGCAACGCGCCACCGACACGCGTGGATCTAGCGCGTAAGAGGCCTTGAGTTGAGACAATCACCTTAGTTGAGTACAAGATTAACCCAAGATTAAAAAAACACGGCAAGAAAAGGAATCAAAATGTCAGAATGTCAGATCACACAGCACTCGAGAGCATTAAATGTCCGTCCAGTTCTTTATCAGATCAAACACGTTTAAAAAATAAATTGTCTGCAGCTTTTGAACATGCAGTTTCTATAATCTTTAAATTAATATGATTAAATAATAGTTTAATATTTATAACGCCCTGGATCGGTTTTTTTGTTGCAGAGTGGAGCTGAAGCGTTGAGGAGGAACATGCAGAAGGTGGTCGGAAGCCTGGCTCTTGGATTTTCCGCCGCCGTCTTCAGCTTCATGTTCTAGAGAGAGTTTGTGATCGTGCTTCATTTATTATATTTAATCCTTTTTTTGTTTAAATTTCCGCCACCGTACTCTATCGGAAGAGGTGCTTTATATTCATTCTTCATTGAATTGATTGATGAAATTTGATTTACGAAATTGATGAGCTCTGGGGCGCGTTTGATTTGATGATGATGATGAACATTTTGGATGGAGATGGGATTTGGAGTGGGGAAATCTTTTATTATTACATTTTGATTGGATGGATCCTTTTGTGTTCTGTAATTAATTCTCTTTCATTTCTTCTTCCCATCATTTACTGTTAATTTATTATAACAAATTAAATTATGTGGAAATCAAGTAATTATAAACTTTAATCATTATAAAGCAGTAGGCCACCGACAGGATGAGTGAAGTGATAGACTGCTTTATTTATTTATTTATTTTTTATTTTTTTATTTTTGGTTCTGTATTTGACATATATAGTCCATGAGATCTGAAGGATACGATGTTTGGTGGCGCATCTGAAATAAATTTTGTGGTTGGGAATTACCATAAATACCATTATAATTTATGAATAATTTTGAACATGCGTGGGGG GGAAGAATATAAATATGGTATTTTTATTATTAAAAAGAAAAAAGAAAAAGAAAACATGAATAGAAATATAGTCTTCCTTTTTCTTTTTTGGAAAAAGTCGGGCGGTGGGAGTGGCAGAAAACAAATTCAGGCGACTGCTGGTAAATTTCCCCGCAATAATTGACGCGACAGTTCACGTGGCCAACTGTTATTGGATTGTCGAAATTGGCAAGGGCCCCACTCTCAATCATCCAGCTGTATCCAGTCCCTCTCTCCTTAAAACTAAATTATTGGATCCTAAACCGCGTAACTAATCCTCATTTAGCTGACGTGGCTGGCACCGAATTTCATAACTTAAATTTTAATTTAATTTTTTATCATTTTATTTACTCATTCTCATTTGTTTATACCTAAAAAAGAGAGGAAAAGAAACACTAATGGGCTTTCGACCGTGCTTAAATCTCCCGTATTTACTCATTCTCTACGTGGGCCCTTCTTTTCGCACCCAACGGCTAGTACAGGCCCATTAATAGTGGGCCCCATTTGTCTTACAGGTTCTGTTGTCTTTTCTTTTTTTCTTTTTGTAAATTTATTTTTTAATTTTTTTTAAAAGTGCTTTGAGGTGTTATTTACTGGTCTATATATACACTATTACACCTCGGCCCTTGGATGCATCCACTTCATCATCTACACACGCTCACTCGGTAGACATGGGGAGACAATCTGTGATCGCACTCGTTCTGATCTGCGCTGTCGTTGCCGGTGTCGGTGGTCAGTCTCCTGCTGCAGCTCCGACTACAACACCGGCGACTCCCGCGCCTGTAGCAGCGAAGAATCCACCTCCAGCAGCATCTCCTGTTGTGCCACCGACAAATTCATCTCCCGCTGCCGCTCCCCAAAAGCCGGTCACTCCAGCACCGGTATCTACGCCACCAGCAGTCGCTCCAGTGGCCTCTCCGCCGGCCAGTACTCCTCCAACTGCTTCCGTTCCGGCTAGCTCTCCACCAGCTGCTTCCGTTCCGGCTAGCTCCCCGCCAGCTACCGTTCCAGCGAGCTCTCCGCCGGTTCCAGTTCCGGCCAGTTCTCCACCGGTTCCAGTTCCGGAGAGCTCTCCTCCCGTACCAACTCCGATCGAATCTCCTCCCGCTCCCGAAACTGCTCCTCCTGCTCCGGTCGCATCACCTCCCGCTGAGGTCCCGTCGCCGGCGCCTAGTAAGAAGAAATCGAAGAAGCACAAAGCACCAGCTCCTTCTCCGGCGTTGCTTGGTCCACCTGCTCCACCCTCTGAAGCCCCAGGAGGAAGTGAGGAAGGTCCTACCCCCGCCCCTTCACTGGACGACAAGAGTGGAGCTGAAGCGTTGAGGAGGAACATGCAGAAGGTGGTCGGAAGCCTGGCTCTTGGATTTTCCGCCGCCGTCTTCAGCTTCATGTTCTAGAGAGAGTTTGTGATCGTGCTTCATTTATTATATTTAATCCTTTTTTTGTTTAAATTTCCGCCACCGTACTCTATCGGAAGAGGTGCTTTATATTCATTCTTCATTGAATTGATTGATGAAATTTGATTTACGAAATTGATGAGCTCTGGGGCGCGTTTGATTTGATGATGATGATGAACATTTTGGATGGAGATGGGATTTGGAGTGGGGAAATCTTTTATTATTACATTTTGATTGGATGGATCCTTTTGTGTTCTGTAATTAATTCTCTTTCATTTCTTCTTCCCATCATTTACTGTTAATTTATTATAACAAATTAAATTATGTGGAAATCAAGTAATTATAAACTTTAATCATTATAAAGCAGTAGGCCACCGACAGGATGAGTGAAGTGATAGACTGCTTTATTTATTTATTTATTTTTTATTTTTTTATTTTTGGTTCTGTATTTGACATATATAGTCCATGAGATCTGAAGGATACGATGTTTGGTGGCGCATCTGAAATAAATTTTGTGGTTGGGAATTACCATAAATACCATTATAATTTATGAATAATTTTGAACATGCGTGGGGG ATGGGGAGACAATCTGTGATCGCACTCGTTCTGATCTGCGCTGTCGTTGCCGGTGTCGGTGGTCAGTCTCCTGCTGCAGCTCCGACTACAACACCGGCGACTCCCGCGCCTGTAGCAGCGAAGAATCCACCTCCAGCAGCATCTCCTGTTGTGCCACCGACAAATTCATCTCCCGCTGCCGCTCCCCAAAAGCCGGTCACTCCAGCACCGGTATCTACGCCACCAGCAGTCGCTCCAGTGGCCTCTCCGCCGGCCAGTACTCCTCCAACTGCTTCCGTTCCGGCTAGCTCTCCACCAGCTGCTTCCGTTCCGGCTAGCTCCCCGCCAGCTACCGTTCCAGCGAGCTCTCCGCCGGTTCCAGTTCCGGCCAGTTCTCCACCGGTTCCAGTTCCGGAGAGCTCTCCTCCCGTACCAACTCCGATCGAATCTCCTCCCGCTCCCGAAACTGCTCCTCCTGCTCCGGTCGCATCACCTCCCGCTGAGGTCCCGTCGCCGGCGCCTAGTAAGAAGAAATCGAAGAAGCACAAAGCACCAGCTCCTTCTCCGGCGTTGCTTGGTCCACCTGCTCCACCCTCTGAAGCCCCAGGAGGAAGTGAGGAAGGTCCTACCCCCGCCCCTTCACTGGACGACAAGAGTGGAGCTGAAGCGTTGAGGAGGAACATGCAGAAGGTGGTCGGAAGCCTGGCTCTTGGATTTTCCGCCGCCGTCTTCAGCTTCATGTTCTAG
BLAST of CmoCh07G006820 vs. Swiss-Prot
Match: AGP18_ARATH (Lysine-rich arabinogalactan protein 18 OS=Arabidopsis thaliana GN=AGP18 PE=2 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 1.5e-23 Identity = 112/245 (45.71%), Postives = 142/245 (57.96%), Query Frame = 1
BLAST of CmoCh07G006820 vs. Swiss-Prot
Match: AGP9_ARATH (Classical arabinogalactan protein 9 OS=Arabidopsis thaliana GN=AGP9 PE=1 SV=2) HSP 1 Score: 73.9 bits (180), Expect = 2.6e-12 Identity = 101/234 (43.16%), Postives = 132/234 (56.41%), Query Frame = 1
BLAST of CmoCh07G006820 vs. Swiss-Prot
Match: AGP17_ARATH (Lysine-rich arabinogalactan protein 17 OS=Arabidopsis thaliana GN=AGP17 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 3.7e-06 Identity = 77/177 (43.50%), Postives = 101/177 (57.06%), Query Frame = 1
BLAST of CmoCh07G006820 vs. TrEMBL
Match: Q9XIV1_CUCSA (Arabinogalactan protein OS=Cucumis sativus GN=Csa_6G493850 PE=2 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 2.3e-79 Identity = 205/247 (83.00%), Postives = 214/247 (86.64%), Query Frame = 1
BLAST of CmoCh07G006820 vs. TrEMBL
Match: W9QJZ0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009418 PE=4 SV=1) HSP 1 Score: 156.8 bits (395), Expect = 3.4e-35 Identity = 137/241 (56.85%), Postives = 166/241 (68.88%), Query Frame = 1
BLAST of CmoCh07G006820 vs. TrEMBL
Match: A9PD05_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18840g PE=2 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 1.4e-33 Identity = 123/239 (51.46%), Postives = 147/239 (61.51%), Query Frame = 1
BLAST of CmoCh07G006820 vs. TrEMBL
Match: A9PES9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 1.9e-33 Identity = 123/239 (51.46%), Postives = 147/239 (61.51%), Query Frame = 1
BLAST of CmoCh07G006820 vs. TrEMBL
Match: A0A059AM67_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00731 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 5.5e-33 Identity = 124/239 (51.88%), Postives = 158/239 (66.11%), Query Frame = 1
BLAST of CmoCh07G006820 vs. TAIR10
Match: AT4G37450.1 (AT4G37450.1 arabinogalactan protein 18) HSP 1 Score: 111.3 bits (277), Expect = 8.3e-25 Identity = 112/245 (45.71%), Postives = 142/245 (57.96%), Query Frame = 1
BLAST of CmoCh07G006820 vs. TAIR10
Match: AT2G14890.1 (AT2G14890.1 arabinogalactan protein 9) HSP 1 Score: 73.9 bits (180), Expect = 1.5e-13 Identity = 101/234 (43.16%), Postives = 132/234 (56.41%), Query Frame = 1
BLAST of CmoCh07G006820 vs. TAIR10
Match: AT2G23130.1 (AT2G23130.1 arabinogalactan protein 17) HSP 1 Score: 53.5 bits (127), Expect = 2.1e-07 Identity = 77/177 (43.50%), Postives = 101/177 (57.06%), Query Frame = 1
BLAST of CmoCh07G006820 vs. NCBI nr
Match: gi|659079597|ref|XP_008440341.1| (PREDICTED: lysine-rich arabinogalactan protein 18-like [Cucumis melo]) HSP 1 Score: 305.8 bits (782), Expect = 6.5e-80 Identity = 208/247 (84.21%), Postives = 218/247 (88.26%), Query Frame = 1
BLAST of CmoCh07G006820 vs. NCBI nr
Match: gi|525507150|ref|NP_001267612.1| (uncharacterized protein LOC101210435 precursor [Cucumis sativus]) HSP 1 Score: 303.5 bits (776), Expect = 3.2e-79 Identity = 205/247 (83.00%), Postives = 214/247 (86.64%), Query Frame = 1
BLAST of CmoCh07G006820 vs. NCBI nr
Match: gi|703064765|ref|XP_010087285.1| (hypothetical protein L484_009418 [Morus notabilis]) HSP 1 Score: 156.8 bits (395), Expect = 4.9e-35 Identity = 137/241 (56.85%), Postives = 166/241 (68.88%), Query Frame = 1
BLAST of CmoCh07G006820 vs. NCBI nr
Match: gi|225438916|ref|XP_002284001.1| (PREDICTED: lysine-rich arabinogalactan protein 18 [Vitis vinifera]) HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34 Identity = 138/244 (56.56%), Postives = 161/244 (65.98%), Query Frame = 1
BLAST of CmoCh07G006820 vs. NCBI nr
Match: gi|566172092|ref|XP_006383544.1| (hypothetical protein POPTR_0005s18840g [Populus trichocarpa]) HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33 Identity = 123/239 (51.46%), Postives = 147/239 (61.51%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |