Carg00812 (gene) Silver-seed gourd

Overview
NameCarg00812
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionArabinogalactan protein
LocationCucurbita_argyrosperma_scaffold_014 : 1587563 .. 1589358 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGTATTATTTGTGGGTCTATAATCTATATATACACGATTAAGCCACGAGCTTGGTAACATTCATTACTATATCGTCTACAAACGCTCCCACGGTAGAAATGGGGAGACAGTCTGTAATCGCACTCGTTCTCATTTGCGCCGTCGTTGCTGGCGTCGGTGGCCAGTCGCCAGCTGCAGCTCCGACTACCGTTCCGGGTGCTACCTCGCCTGCAGCAGCAAAGTATACACCTCCAGCCGCGTCTCCTATATCGCCACCGACAAATTTATCTCCTGTCGCCGCTCCCCAAAAGCCGGTTACTCCAGCTCCCGTCTCCACGCCGCCCGCATCTGCGCCACCAGCAGTTGCTCCAGTAGCATCTCCACCGGCCAGCACTCCACCGACTGCTTCCGTTCCTGCTAGCTCTCCACCAGCTGCTTCCGTTCCGGCTAGCTCTCCACCGACTGCTTCTGTTCCGGCTAGCTCTCCCCCCGCTGCTTCCGTTCCAGCGAGCTCTCCGCCGGTTCCAGTTCCAGCAAGTTCTCCACCAGTTCCAGTACCGGAGAGCTCTCCTCCAGTATCAACTCCGACGCAATCTCCTCCTGCGCCAACTCCAACAAGCACTCCCGACAGTGCTCCGCCTGTTGAGGTACCATCGCCGGCGCCTAGCAAGAAGTCGAGGAAGCACAAAGCACCAGCTCCTTCCCCGGCGTTGCTTGGTCCCCCTGCACCTCCTTCCGAAGCCCCTGGTGCAAGCGAGGAAGGTCCTTCACCCGGCCCTTCACTAGAAGACAAGGTAATTTAATTCCACCTAAATCTCTACCATCATACCCAATATGTGTCCATAATCTGTATAGAATTGATGGCATTGAGCTCATTTCACTCTGCCATTATAGCAAGTGAAATGAGCTCAATGCCACGCGCCACCGACACGCGTAGATCTAGCGTGTAAGAATCCTTAAGTCGAGATAATAACCATGGTCGAGTCTAAAGATTAACCCAAGGCCTCGAAGTACTCAATAACACGTCAAATCAAAAAGAAAGAAGATGTCAGAATGTCAGATCACACTATGCTCGAGATGAATAAATGTCATTCCAGTGTTCTGAGCTCACAGTAAGGCAAACACATTAATAAATTAAATAGAGTAGTGAGTCACATGTGATTATTAATTTTGAGCATAATATTAAAGAAATGGCATGGATCTGTGTTTTGTTGCAGAGTGGAGCTGAAGCACTGCAGAAGGTGGCCGGAAGCTTGGCTTTGGGATGGGCTGCCGTCGCCGTTAGCTTCATCATCTAGAGCGAGGAAAATAAGGAGAGAGATGATGTGATCGTTCTTCATTTATTTATATTGAATCTTTATTTTGTTTAAAATTTCCTCCATTGTACTCCATATCATAAGAGGTGCTTTTTGATTGAATTGATTGATGAAATTTGTTTTTACCGAATCGACCACACTTGGGTGTATGCTTTGATCGATTAACATTTGGGATCCTTTTTGTGTTCTGTAATTAATTCTCCTTAGTTTCCTCCTACATCATGTGTGACAATTTGGTGGAACACTCCAACACGACATCTTCACAGACAGATCTAGTAGCTCAAAAAAACTAAATTTAGTGAAAATCCTGAGGTTGCTTTCCAATTAAACAAGCCTTATTCGATAAAATGTATGAACAAAATACGAACACTTATTATTCTTTAACGCAACATCAACCGTAGTAATAGCAGTCCACCGACAGGGATAAGTGAAGTGAGGGTTTTTTTTTTTAAGAAAAAAAATTATATATTTTGGATACGATGTTTGGTGGGGGATCTGA

mRNA sequence

GGGGTATTATTTGTGGGTCTATAATCTATATATACACGATTAAGCCACGAGCTTGGTAACATTCATTACTATATCGTCTACAAACGCTCCCACGGTAGAAATGGGGAGACAGTCTGTAATCGCACTCGTTCTCATTTGCGCCGTCGTTGCTGGCGTCGGTGGCCAGTCGCCAGCTGCAGCTCCGACTACCGTTCCGGGTGCTACCTCGCCTGCAGCAGCAAAGTATACACCTCCAGCCGCGTCTCCTATATCGCCACCGACAAATTTATCTCCTGTCGCCGCTCCCCAAAAGCCGGTTACTCCAGCTCCCGTCTCCACGCCGCCCGCATCTGCGCCACCAGCAGTTGCTCCAGTAGCATCTCCACCGGCCAGCACTCCACCGACTGCTTCCGTTCCTGCTAGCTCTCCACCAGCTGCTTCCGTTCCGGCTAGCTCTCCACCGACTGCTTCTGTTCCGGCTAGCTCTCCCCCCGCTGCTTCCGTTCCAGCGAGCTCTCCGCCGGTTCCAGTTCCAGCAAGTTCTCCACCAGTTCCAGTACCGGAGAGCTCTCCTCCAGTATCAACTCCGACGCAATCTCCTCCTGCGCCAACTCCAACAAGCACTCCCGACAGTGCTCCGCCTGTTGAGGTACCATCGCCGGCGCCTAGCAAGAAGTCGAGGAAGCACAAAGCACCAGCTCCTTCCCCGGCGTTGCTTGGTCCCCCTGCACCTCCTTCCGAAGCCCCTGGTGCAAGCGAGGAAGGTCCTTCACCCGGCCCTTCACTAGAAGACAAGAGTGGAGCTGAAGCACTGCAGAAGGTGGCCGGAAGCTTGGCTTTGGGATGGGCTGCCGTCGCCGTTAGCTTCATCATCTAGAGCGAGGAAAATAAGGAGAGAGATGATGTGATCGTTCTTCATTTATTTATATTGAATCTTTATTTTGTTTAAAATTTCCTCCATTGTACTCCATATCATAAGAGGTGCTTTTTGATTGAATTGATTGATGAAATTTGTTTTTACCGAATCGACCACACTTGGGTGTATGCTTTGATCGATTAACATTTGGGATCCTTTTTGTGTTCTGTAATTAATTCTCCTTAGTTTCCTCCTACATCATGTGTGACAATTTGGTGGAACACTCCAACACGACATCTTCACAGACAGATCTAGTAGCTCAAAAAAACTAAATTTAGTGAAAATCCTGAGGTTGCTTTCCAATTAAACAAGCCTTATTCGATAAAATGTATGAACAAAATACGAACACTTATTATTCTTTAACGCAACATCAACCGTAGTAATAGCAGTCCACCGACAGGGATAAGTGAAGTGAGGGTTTTTTTTTTTAAGAAAAAAAATTATATATTTTGGATACGATGTTTGGTGGGGGATCTGA

Coding sequence (CDS)

ATGGGGAGACAGTCTGTAATCGCACTCGTTCTCATTTGCGCCGTCGTTGCTGGCGTCGGTGGCCAGTCGCCAGCTGCAGCTCCGACTACCGTTCCGGGTGCTACCTCGCCTGCAGCAGCAAAGTATACACCTCCAGCCGCGTCTCCTATATCGCCACCGACAAATTTATCTCCTGTCGCCGCTCCCCAAAAGCCGGTTACTCCAGCTCCCGTCTCCACGCCGCCCGCATCTGCGCCACCAGCAGTTGCTCCAGTAGCATCTCCACCGGCCAGCACTCCACCGACTGCTTCCGTTCCTGCTAGCTCTCCACCAGCTGCTTCCGTTCCGGCTAGCTCTCCACCGACTGCTTCTGTTCCGGCTAGCTCTCCCCCCGCTGCTTCCGTTCCAGCGAGCTCTCCGCCGGTTCCAGTTCCAGCAAGTTCTCCACCAGTTCCAGTACCGGAGAGCTCTCCTCCAGTATCAACTCCGACGCAATCTCCTCCTGCGCCAACTCCAACAAGCACTCCCGACAGTGCTCCGCCTGTTGAGGTACCATCGCCGGCGCCTAGCAAGAAGTCGAGGAAGCACAAAGCACCAGCTCCTTCCCCGGCGTTGCTTGGTCCCCCTGCACCTCCTTCCGAAGCCCCTGGTGCAAGCGAGGAAGGTCCTTCACCCGGCCCTTCACTAGAAGACAAGAGTGGAGCTGAAGCACTGCAGAAGGTGGCCGGAAGCTTGGCTTTGGGATGGGCTGCCGTCGCCGTTAGCTTCATCATCTAG

Protein sequence

MGRQSVIALVLICAVVAGVGGQSPAAAPTTVPGATSPAAAKYTPPAASPISPPTNLSPVAAPQKPVTPAPVSTPPASAPPAVAPVASPPASTPPTASVPASSPPAASVPASSPPTASVPASSPPAASVPASSPPVPVPASSPPVPVPESSPPVSTPTQSPPAPTPTSTPDSAPPVEVPSPAPSKKSRKHKAPAPSPALLGPPAPPSEAPGASEEGPSPGPSLEDKSGAEALQKVAGSLALGWAAVAVSFII
Homology
[Close]
BLAST of Carg00812 vs. NCBI nr
Match: XP_023545096.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTTVPG 34
          MGRQSVIALVLICAVVAGVGGQSPAAAPTTVPG
Sbjct: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTTVPG 33

[Close]
BLAST of Carg00812 vs. NCBI nr
Match: XP_022950679.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita moschata])

HSP 1 Score: 61.2 bits (147), Expect = 5.7e-06
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTTVP 33
          MGRQSVIALVLICAVVAGVGGQSPAAAPTTVP
Sbjct: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTTVP 32

[Close]
BLAST of Carg00812 vs. NCBI nr
Match: XP_022978052.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima])

HSP 1 Score: 61.2 bits (147), Expect = 5.7e-06
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTTVPG 34
          MGRQSVIALVLICAV+AGVGGQSPAAAPT+VPG
Sbjct: 1  MGRQSVIALVLICAVIAGVGGQSPAAAPTSVPG 33

[Close]
BLAST of Carg00812 vs. NCBI nr
Match: XP_022963306.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-05
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTTVP 33
          MGRQSVIALVLICAVVAGVGGQSPAAAPTT P
Sbjct: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTTTP 32

[Close]
BLAST of Carg00812 vs. NCBI nr
Match: XP_023003133.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima])

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-05
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTTVP 33
          MGRQSVIALVLICAVVAGVGGQSPAAAPTT P
Sbjct: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTTTP 32

[Close]
BLAST of Carg00812 vs. TrEMBL
Match: tr|Q9XIV1|Q9XIV1_CUCSA (Arabinogalactan protein OS=Cucumis sativus OX=3659 GN=Csa_6G493850 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-04
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPT 30
          MGRQSVIALVLICAVVAGVGGQSPAAAPT
Sbjct: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPT 29

The following BLAST results are available for this feature:
BLAST of Carg00812 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023545096.11.5e-06100.00lysine-rich arabinogalactan protein 18-like [Cucurbita pepo subsp. pepo][more]
XP_022950679.15.7e-06100.00lysine-rich arabinogalactan protein 18-like [Cucurbita moschata][more]
XP_022978052.15.7e-0693.94lysine-rich arabinogalactan protein 18-like [Cucurbita maxima][more]
XP_022963306.11.7e-0596.88lysine-rich arabinogalactan protein 18-like [Cucurbita moschata][more]
XP_023003133.11.7e-0596.88lysine-rich arabinogalactan protein 18-like [Cucurbita maxima][more]
BLAST of Carg00812 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg00812 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg00812 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|Q9XIV1|Q9XIV1_CUCSA2.1e-04100.00Arabinogalactan protein OS=Cucumis sativus OX=3659 GN=Csa_6G493850 PE=2 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00812-RACarg00812-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..228
NoneNo IPR availablePANTHERPTHR37209FAMILY NOT NAMEDcoord: 99..247
coord: 1..123
NoneNo IPR availablePANTHERPTHR37209:SF2LYSINE-RICH ARABINOGALACTAN PROTEIN 17-RELATEDcoord: 99..247
coord: 1..123

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00812Cla013996Watermelon (97103) v1carwmB0407
Carg00812Csa6G493850Cucumber (Chinese Long) v2carcuB0441
Carg00812MELO3C007601Melon (DHL92) v3.5.1carmeB0414
Carg00812ClCG01G017230Watermelon (Charleston Gray)carwcgB0397
Carg00812CSPI06G28590Wild cucumber (PI 183967)carcpiB0446
Carg00812Cucsa.102870Cucumber (Gy14) v1carcgyB0467
Carg00812CmaCh07G006710Cucurbita maxima (Rimu)carcmaB0571
Carg00812CmaCh03G009440Cucurbita maxima (Rimu)carcmaB0567
Carg00812CmoCh07G006820Cucurbita moschata (Rifu)carcmoB0554
Carg00812Lsi01G009310Bottle gourd (USVL1VR-Ls)carlsiB364
Carg00812Cp4.1LG10g02190Cucurbita pepo (Zucchini)carcpeB0554
Carg00812Cp4.1LG19g10910Cucurbita pepo (Zucchini)carcpeB0563
Carg00812CsGy6G028070Cucumber (Gy14) v2carcgybB0418
Carg00812MELO3C007601.2Melon (DHL92) v3.6.1carmedB0418
Carg00812CsaV3_6G043770Cucumber (Chinese Long) v3carcucB0442
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00812Carg18571Silver-seed gourdcarcarB001
The following block(s) are covering this gene:
GeneOrganismBlock
Carg00812Wax gourdcarwgoB0487
Carg00812Wax gourdcarwgoB0491
Carg00812Wax gourdcarwgoB0494
Carg00812Silver-seed gourdcarcarB218
Carg00812Silver-seed gourdcarcarB344
Carg00812Silver-seed gourdcarcarB401
Carg00812Silver-seed gourdcarcarB427
Carg00812Cucumber (Gy14) v2carcgybB0409
Carg00812Cucumber (Gy14) v2carcgybB0417
Carg00812Cucumber (Gy14) v1carcgyB0474
Carg00812Cucumber (Gy14) v1carcgyB0475
Carg00812Cucurbita maxima (Rimu)carcmaB0555
Carg00812Cucurbita maxima (Rimu)carcmaB0557
Carg00812Cucurbita maxima (Rimu)carcmaB0563
Carg00812Cucurbita maxima (Rimu)carcmaB0566
Carg00812Cucurbita maxima (Rimu)carcmaB0570
Carg00812Cucurbita moschata (Rifu)carcmoB0542
Carg00812Cucurbita moschata (Rifu)carcmoB0545
Carg00812Cucurbita moschata (Rifu)carcmoB0548
Carg00812Cucurbita moschata (Rifu)carcmoB0550
Carg00812Cucurbita moschata (Rifu)carcmoB0551
Carg00812Cucurbita moschata (Rifu)carcmoB0553
Carg00812Cucurbita pepo (Zucchini)carcpeB0556
Carg00812Cucurbita pepo (Zucchini)carcpeB0567
Carg00812Cucurbita pepo (Zucchini)carcpeB0568
Carg00812Cucurbita pepo (Zucchini)carcpeB0570
Carg00812Cucurbita pepo (Zucchini)carcpeB0573
Carg00812Wild cucumber (PI 183967)carcpiB0436
Carg00812Wild cucumber (PI 183967)carcpiB0445
Carg00812Cucumber (Chinese Long) v2carcuB0431
Carg00812Cucumber (Chinese Long) v2carcuB0440
Carg00812Cucumber (Chinese Long) v3carcucB0433
Carg00812Cucumber (Chinese Long) v3carcucB0441
Carg00812Bottle gourd (USVL1VR-Ls)carlsiB365
Carg00812Bottle gourd (USVL1VR-Ls)carlsiB372
Carg00812Melon (DHL92) v3.5.1carmeB0406
Carg00812Melon (DHL92) v3.5.1carmeB0411
Carg00812Melon (DHL92) v3.6.1carmedB0410
Carg00812Melon (DHL92) v3.6.1carmedB0415
Carg00812Watermelon (Charleston Gray)carwcgB0403
Carg00812Watermelon (Charleston Gray)carwcgB0399
Carg00812Watermelon (97103) v1carwmB0400
Carg00812Watermelon (97103) v1carwmB0404
Carg00812Watermelon (97103) v2carwmbB0426
Carg00812Watermelon (97103) v2carwmbB0429
Carg00812Watermelon (97103) v2carwmbB0433