Carg18571 (gene) Silver-seed gourd

Overview
NameCarg18571
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_109 : 504482 .. 506048 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCTCCTGCTGCAGCTCCGCAGCGAAGTATCCATCTCCAGCAGCATCTCCTGTTGTGCCACCGACAAATTCATCTCCCGCTGCCGCTCCCCAAAAGCCGGTCACTCCAGCACCGGTATCTACGCCACCAGCAGTCGCTCCAGTGGCCTCTCCGCCGGCTAGTACTCCTCCAACTGCTTCCGTTCCGGCTAGCTCCCCACCAGCTGCTTCCGTTCCGGCTAGCTCCCCGCCAGCTACCGTTCCAGCGAGCTCTCCGCCGGTTCCAGTTCCGGCCAGTTCTCCACCGGTTCCAGTTCCGGAGAGCTCTCCTCCCGTACCAACTCCGATCGAATCTCCTCCCGCTCCCGAAACTGCTCCTCCTGCTCCGGTCGCATCACCTCCCGCTGAGGTCCCGTCGCCGGCGCCTAGTAAGAAGAAATCGAAGAAGCACAAAGCACCAGCTCCTTCTCCGGCGTTGCTTGGTCCACCTGCTCCACCCTCTGAAGCCCCAGGAGGAAGTGAGGAAGGTCCTTCCCCCGCCCCTTCACTGGACGACAAGGTAATTAAATTTTCACCCAAATCTCTGCATTTACCGCCTACACATTTACCCGCATTGTTAATCTGCTCAAGATCTGCAACATCCCTAAAAAAAAATCCGCCATTATCAATATCCACAGCCAAGATCTCTCTATAATTTGGATAAAAATGGCACATCTTAGCGCTCTTAGGGCTGTGTCAATGGCCGCATTTGCTGCACTCGATAACTGAGTGACTAAGCCTAACGCAACGCGCCACCGACACGCGTGGATCTAGCGCGTAAGAAGCCTTGAGTTGAGACAATTACCTTAGTTGAGTACAAGATTAACCCAAGATTAAAGAAACACGGCAAGAAAAGGAATCAAAATGTCAGAATGTCAGATCACACAGCACTCGAGAGCATTAAATGTCCGTCCAGTTCTTTATCAGATCAAACACGTTTAAAAAATAAGTTGTCTGCAGCTTTTGAACATGCAGTTTCTATAATCTTTAAATTAATATGATTAAATAATAGTTTAATATTTATAACGCCCTGGATCTGTTTTTTTGTTGCAGAGTGGAGCTGAAGCGTTGAGGAGGAACATGCAGAAGGTGGTCGGAAGCCTGGCTCTGGGATTTTCCGCCGCCGTCTTCAGCTTCATGTTCTAGAGAGAGTTTGTGATCGTGCTTCATTTATTATATTTAATCCTTTTTTTTGTTTAAATTTCCGCCACCGTACTCTATCAGAAGAGGTGCTTTATATTCATTCTTCATTGAATTGATTGATGAAATTTGATTTACGAAATTGATGAGCTCTGGGGCGTTTGATTTGATGATGATGATGAACATTTTGGATGGAGATGGGATTTGGAGTGGGGAAATCTTTTATTATTACATTTTGATTGGATGGATCCATTTGTGTTCTGTAATTAATTCTCTTTCATTTCTTCTTCCCATCATTTACTGTTAATTTATTATAACAAATTAAATTATGTGGAAATCAAGTAATTATAAACTTTAATCATTATAAAGCAGTAGGCCACCGACAGGATGAGTGAAGTGATAGA

mRNA sequence

ATGGCCATCTCCTGCTGCAGCTCCGCAGCGAAGTATCCATCTCCAGCAGCATCTCCTGTTGTGCCACCGACAAATTCATCTCCCGCTGCCGCTCCCCAAAAGCCGGTCACTCCAGCACCGGTATCTACGCCACCAGCAGTCGCTCCAGTGGCCTCTCCGCCGGCTAGTACTCCTCCAACTGCTTCCGTTCCGGCTAGCTCCCCACCAGCTGCTTCCGTTCCGGCTAGCTCCCCGCCAGCTACCGTTCCAGCGAGCTCTCCGCCGGTTCCAGTTCCGGCCAGTTCTCCACCGGTTCCAGTTCCGGAGAGCTCTCCTCCCGTACCAACTCCGATCGAATCTCCTCCCGCTCCCGAAACTGCTCCTCCTGCTCCGGTCGCATCACCTCCCGCTGAGGTCCCGTCGCCGGCGCCTAGTAAGAAGAAATCGAAGAAGCACAAAGCACCAGCTCCTTCTCCGGCGTTGCTTGGTCCACCTGCTCCACCCTCTGAAGCCCCAGGAGGAAGTGAGGAAGGTCCTTCCCCCGCCCCTTCACTGGACGACAAGAGTGGAGCTGAAGCGTTGAGGAGGAACATGCAGAAGGTGGTCGGAAGCCTGGCTCTGGGATTTTCCGCCGCCGTCTTCAGCTTCATGTTCTAGAGAGAGTTTGTGATCGTGCTTCATTTATTATATTTAATCCTTTTTTTTGTTTAAATTTCCGCCACCGTACTCTATCAGAAGAGGTGCTTTATATTCATTCTTCATTGAATTGATTGATGAAATTTGATTTACGAAATTGATGAGCTCTGGGGCGTTTGATTTGATGATGATGATGAACATTTTGGATGGAGATGGGATTTGGAGTGGGGAAATCTTTTATTATTACATTTTGATTGGATGGATCCATTTGTGTTCTGTAATTAATTCTCTTTCATTTCTTCTTCCCATCATTTACTGTTAATTTATTATAACAAATTAAATTATGTGGAAATCAAGTAATTATAAACTTTAATCATTATAAAGCAGTAGGCCACCGACAGGATGAGTGAAGTGATAGA

Coding sequence (CDS)

ATGGCCATCTCCTGCTGCAGCTCCGCAGCGAAGTATCCATCTCCAGCAGCATCTCCTGTTGTGCCACCGACAAATTCATCTCCCGCTGCCGCTCCCCAAAAGCCGGTCACTCCAGCACCGGTATCTACGCCACCAGCAGTCGCTCCAGTGGCCTCTCCGCCGGCTAGTACTCCTCCAACTGCTTCCGTTCCGGCTAGCTCCCCACCAGCTGCTTCCGTTCCGGCTAGCTCCCCGCCAGCTACCGTTCCAGCGAGCTCTCCGCCGGTTCCAGTTCCGGCCAGTTCTCCACCGGTTCCAGTTCCGGAGAGCTCTCCTCCCGTACCAACTCCGATCGAATCTCCTCCCGCTCCCGAAACTGCTCCTCCTGCTCCGGTCGCATCACCTCCCGCTGAGGTCCCGTCGCCGGCGCCTAGTAAGAAGAAATCGAAGAAGCACAAAGCACCAGCTCCTTCTCCGGCGTTGCTTGGTCCACCTGCTCCACCCTCTGAAGCCCCAGGAGGAAGTGAGGAAGGTCCTTCCCCCGCCCCTTCACTGGACGACAAGAGTGGAGCTGAAGCGTTGAGGAGGAACATGCAGAAGGTGGTCGGAAGCCTGGCTCTGGGATTTTCCGCCGCCGTCTTCAGCTTCATGTTCTAG

Protein sequence

MAISCCSSAAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSPPAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF
Homology
[Close]
BLAST of Carg18571 vs. NCBI nr
Match: XP_022963306.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita moschata])

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 179 DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF 212
           DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF
Sbjct: 209 DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF 241

[Close]
BLAST of Carg18571 vs. NCBI nr
Match: XP_023003133.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima])

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 179 DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF 212
           DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF
Sbjct: 219 DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF 251

[Close]
BLAST of Carg18571 vs. NCBI nr
Match: XP_023517454.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.5 bits (153), Expect = 9.6e-07
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 179 DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF 212
           DDKSGAEALR+NMQKVVGSLALGFSAAVFSFMF
Sbjct: 209 DDKSGAEALRKNMQKVVGSLALGFSAAVFSFMF 241

The following BLAST results are available for this feature:
BLAST of Carg18571 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022963306.14.3e-07100.00lysine-rich arabinogalactan protein 18-like [Cucurbita moschata][more]
XP_023003133.14.3e-07100.00lysine-rich arabinogalactan protein 18-like [Cucurbita maxima][more]
XP_023517454.19.6e-0796.97lysine-rich arabinogalactan protein 18-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg18571 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg18571 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg18571 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18571-RACarg18571-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 38..54
score: 44.71
coord: 85..110
score: 33.08
coord: 8..29
score: 26.36
coord: 66..83
score: 34.44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..185
NoneNo IPR availablePANTHERPTHR37209FAMILY NOT NAMEDcoord: 14..207

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18571Cla013996Watermelon (97103) v1carwmB0005
Carg18571Csa6G493850Cucumber (Chinese Long) v2carcuB0003
Carg18571MELO3C007601Melon (DHL92) v3.5.1carmeB0002
Carg18571ClCG01G017230Watermelon (Charleston Gray)carwcgB0002
Carg18571CSPI06G28590Wild cucumber (PI 183967)carcpiB0003
Carg18571Cucsa.102870Cucumber (Gy14) v1carcgyB0001
Carg18571CmaCh07G006710Cucurbita maxima (Rimu)carcmaB0004
Carg18571CmaCh03G009440Cucurbita maxima (Rimu)carcmaB0003
Carg18571CmoCh07G006820Cucurbita moschata (Rifu)carcmoB0005
Carg18571Lsi01G009310Bottle gourd (USVL1VR-Ls)carlsiB001
Carg18571Cp4.1LG10g02190Cucurbita pepo (Zucchini)carcpeB0001
Carg18571Cp4.1LG19g10910Cucurbita pepo (Zucchini)carcpeB0002
Carg18571CsGy6G028070Cucumber (Gy14) v2carcgybB0003
Carg18571MELO3C007601.2Melon (DHL92) v3.6.1carmedB0003
Carg18571CsaV3_6G043770Cucumber (Chinese Long) v3carcucB0003
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg18571Carg00812Silver-seed gourdcarcarB001
The following block(s) are covering this gene:
GeneOrganismBlock
Carg18571Cucumber (Gy14) v2carcgybB0001
Carg18571Cucumber (Gy14) v1carcgyB0003
Carg18571Cucumber (Chinese Long) v2carcuB0001
Carg18571Cucumber (Chinese Long) v3carcucB0001
Carg18571Bottle gourd (USVL1VR-Ls)carlsiB003
Carg18571Melon (DHL92) v3.5.1carmeB0001
Carg18571Melon (DHL92) v3.6.1carmedB0001
Carg18571Watermelon (Charleston Gray)carwcgB0003
Carg18571Watermelon (97103) v1carwmB0004
Carg18571Watermelon (97103) v2carwmbB0002
Carg18571Watermelon (97103) v2carwmbB0003
Carg18571Wax gourdcarwgoB0001
Carg18571Wax gourdcarwgoB0003