CmoCh07G002130 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G002130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr07 : 1068278 .. 1068951 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTATGGATACAGGAATGAATCCTTCGACCATAAGAAATATTACTGTTGGAATAACGGATCAGGGGTCTGCGACAAAGTGAACTCATTCCCATAGCGAATCAACTCCTATATTCCTCGCCACTTCTTGCTTCTCCCATCCAATTGTGTAATTTCTTGGCCAATCCAACCCCACGTCCCCAAACCCATCTTCATTAACTTAAACATATTAGTTTAACTGGTTAAGATATATACTTAGACTAAGTTCTCTGATGTGGTTTATTACATTTAGGCACTGAGGCAGAGAGACGAAAGCTTATCAACAGAATTGGAACTTCTGCAGCAAAAACTAGTAGAACTGGAACAACATGCCAGAGGACGAGGTCTCAGTGGTATTTTGAACTTCAAACACACTCCCTCTGAAAGTGGAAATTTAGCAAAGCCGCCTGCTTGATTAAGTTGCTAGTTTGTCCAGCGAGAAATGTGGTGATGATTTAATCAGCGTGGTCTTGAAAAACGGAGGTGCATTTTCCTAATTCTTTTGACACTTTTGGTGTTAGTATTTTGCACACTGTAAACGATCATTATTCCAATTAAATTCTCTCTCACCCCGCATTAATGGGGTGTAAACTGTGCAAGAATATGTTCTAAATGAAGAATTTTAGCTATGATGGCCCTAATCATCTGATGACA

mRNA sequence

ATGATTTATGGATACAGGAATGAATCCTTCGACCATAAGAAATATTACTGTTGGAATAACGGATCAGGGGCACTGAGGCAGAGAGACGAAAGCTTATCAACAGAATTGGAACTTCTGCAGCAAAAACTAGTAGAACTGGAACAACATGCCAGAGGACGAGGTCTCAGTGGTATTTTGAACTTCAAACACACTCCCTCTGAAAGTGGAAATTTAGCAAAGCCGCCTGCTTGATTAAGTTGCTAGTTTGTCCAGCGAGAAATGTGGTGATGATTTAATCAGCGTGGTCTTGAAAAACGGAGGTGCATTTTCCTAATTCTTTTGACACTTTTGGTGTTAGTATTTTGCACACTGTAAACGATCATTATTCCAATTAAATTCTCTCTCACCCCGCATTAATGGGGTGTAAACTGTGCAAGAATATGTTCTAAATGAAGAATTTTAGCTATGATGGCCCTAATCATCTGATGACA

Coding sequence (CDS)

ATGATTTATGGATACAGGAATGAATCCTTCGACCATAAGAAATATTACTGTTGGAATAACGGATCAGGGGCACTGAGGCAGAGAGACGAAAGCTTATCAACAGAATTGGAACTTCTGCAGCAAAAACTAGTAGAACTGGAACAACATGCCAGAGGACGAGGTCTCAGTGGTATTTTGAACTTCAAACACACTCCCTCTGAAAGTGGAAATTTAGCAAAGCCGCCTGCTTGA

Homology

[Close]

BLAST of CmoCh07G002130 vs. TrEMBL
Match: A0A0A0KLK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G518220 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-12
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 24  ALRQRDESLSTELELLQQKLVELEQHARGRGLSGILNFKHTPSESGNLAKP 75
           ALRQRDESL  E+ELL+ KLVELEQ A+GRGL GILNFKH  SESGN AKP
Sbjct: 118 ALRQRDESLVAEMELLKHKLVELEQAAKGRGLGGILNFKHANSESGNSAKP 168

[Close]

BLAST of CmoCh07G002130 vs. TrEMBL
Match: A0A059CE24_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00582 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.6e-09
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 24  ALRQRDESLSTELELLQQKLVELEQHARGRGLSGILNFKHTPSESGNLAKP 75
           A+RQRDE+L  E+ELL+QKL ELEQ A+GRGLSG+ NFK   SE   +AKP
Sbjct: 118 AMRQRDEALEKEVELLKQKLEELEQLAKGRGLSGLFNFKQAVSEDAKIAKP 168

[Close]

BLAST of CmoCh07G002130 vs. TrEMBL
Match: V4W8W9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016976mg PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-08
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 24  ALRQRDESLSTELELLQQKLVELEQHARGRGLSGILNFKHTPSESGNLAKP 75
           ALRQRDE L+ ELELL+QK+ ELEQ A+ RGLSGI +FKH  ++   LAKP
Sbjct: 118 ALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAKP 168

[Close]

BLAST of CmoCh07G002130 vs. TrEMBL
Match: A0A067GR03_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030907mg PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-08
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 24  ALRQRDESLSTELELLQQKLVELEQHARGRGLSGILNFKHTPSESGNLAKP 75
           ALRQRDE L+ ELELL+QK+ ELEQ A+ RGLSGI +FKH  ++   LAKP
Sbjct: 118 ALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAKP 168

[Close]

BLAST of CmoCh07G002130 vs. TrEMBL
Match: A0A151SAN4_CAJCA (Optic atrophy 3 protein isogeny OS=Cajanus cajan GN=KK1_026236 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-07
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 23  GALRQRDESLSTELELLQQKLVELEQHARGRGLSGILNFKHTPSESGNLAK 74
           GA++Q+ E+L+ E+ELL+ ++ ELEQ ARGRGL+GILNFKH  +E+G   K
Sbjct: 117 GAVKQKTENLAEEVELLKHRIQELEQMARGRGLTGILNFKHGNTETGKAEK 167

[Close]

BLAST of CmoCh07G002130 vs. NCBI nr
Match: gi|449433790|ref|XP_004134680.1| (PREDICTED: OPA3-like protein [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 24  ALRQRDESLSTELELLQQKLVELEQHARGRGLSGILNFKHTPSESGNLAKP 75
           ALRQRDESL  E+ELL+ KLVELEQ A+GRGL GILNFKH  SESGN AKP
Sbjct: 118 ALRQRDESLVAEMELLKHKLVELEQAAKGRGLGGILNFKHANSESGNSAKP 168

[Close]

BLAST of CmoCh07G002130 vs. NCBI nr
Match: gi|659078577|ref|XP_008439797.1| (PREDICTED: OPA3-like protein [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 5.3e-12
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 24  ALRQRDESLSTELELLQQKLVELEQHARGRGLSGILNFKHTPSESGNLAKP 75
           ALRQRDESLS E+ELL+ KLVELEQ A+GRGL  ILNFKH  SESGN AKP
Sbjct: 118 ALRQRDESLSAEVELLKHKLVELEQAAKGRGLGSILNFKHANSESGNSAKP 168

[Close]

BLAST of CmoCh07G002130 vs. NCBI nr
Match: gi|702318413|ref|XP_010052253.1| (PREDICTED: OPA3-like protein [Eucalyptus grandis])

HSP 1 Score: 67.8 bits (164), Expect = 9.4e-09
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 24  ALRQRDESLSTELELLQQKLVELEQHARGRGLSGILNFKHTPSESGNLAKP 75
           A+RQRDE+L  E+ELL+QKL ELEQ A+GRGLSG+ NFK   SE   +AKP
Sbjct: 118 AMRQRDEALEKEVELLKQKLEELEQLAKGRGLSGLFNFKQAVSEDAKIAKP 168

[Close]

BLAST of CmoCh07G002130 vs. NCBI nr
Match: gi|568826710|ref|XP_006467713.1| (PREDICTED: OPA3-like protein [Citrus sinensis])

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 24  ALRQRDESLSTELELLQQKLVELEQHARGRGLSGILNFKHTPSESGNLAKP 75
           ALRQRDE L+ ELELL+QK+ ELEQ A+ RGLSGI +FKH  ++   LAKP
Sbjct: 118 ALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAKP 168

[Close]

BLAST of CmoCh07G002130 vs. NCBI nr
Match: gi|567914221|ref|XP_006449424.1| (hypothetical protein CICLE_v10016976mg [Citrus clementina])

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 24  ALRQRDESLSTELELLQQKLVELEQHARGRGLSGILNFKHTPSESGNLAKP 75
           ALRQRDE L+ ELELL+QK+ ELEQ A+ RGLSGI +FKH  ++   LAKP
Sbjct: 118 ALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAKP 168

The following BLAST results are available for this feature:

BLAST of CmoCh07G002130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G002130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLK3_CUCSA	2.9e-12	78.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G518220 PE=4 SV=1	[more]
A0A059CE24_EUCGR	6.6e-09	64.71	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00582 PE=4 SV=1	[more]
V4W8W9_9ROSI	1.5e-08	64.71	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016976mg PE=4 SV=1	[more]
A0A067GR03_CITSI	1.5e-08	64.71	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030907mg PE=4 SV=1	[more]
A0A151SAN4_CAJCA	3.6e-07	56.86	Optic atrophy 3 protein isogeny OS=Cajanus cajan GN=KK1_026236 PE=4 SV=1	[more]

BLAST of CmoCh07G002130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh07G002130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433790\|ref\|XP_004134680.1\|	4.1e-12	78.43	PREDICTED: OPA3-like protein [Cucumis sativus]	[more]
gi\|659078577\|ref\|XP_008439797.1\|	5.3e-12	78.43	PREDICTED: OPA3-like protein [Cucumis melo]	[more]
gi\|702318413\|ref\|XP_010052253.1\|	9.4e-09	64.71	PREDICTED: OPA3-like protein [Eucalyptus grandis]	[more]
gi\|568826710\|ref\|XP_006467713.1\|	2.1e-08	64.71	PREDICTED: OPA3-like protein [Citrus sinensis]	[more]
gi\|567914221\|ref\|XP_006449424.1\|	2.1e-08	64.71	hypothetical protein CICLE_v10016976mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G002130.1	CmoCh07G002130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 29..49 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G002130	Cucsa.046590	Cucumber (Gy14) v1	cgycmoB0043
CmoCh07G002130	Csa6G518220	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G002130	CSPI06G35010	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G002130	Cp4.1LG19g07050	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G002130	CsaV3_6G050490	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G002130	Carg15319	Silver-seed gourd	carcmoB0745
CmoCh07G002130	Carg07756	Silver-seed gourd	carcmoB0888

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G002130	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G002130	Melon (DHL92) v3.6.1	cmomedB875
CmoCh07G002130	Melon (DHL92) v3.6.1	cmomedB886
CmoCh07G002130	Silver-seed gourd	carcmoB1270
CmoCh07G002130	Watermelon (97103) v2	cmowmbB849
CmoCh07G002130	Watermelon (97103) v2	cmowmbB857
CmoCh07G002130	Wax gourd	cmowgoB1051
CmoCh07G002130	Wax gourd	cmowgoB1074
CmoCh07G002130	Cucurbita moschata (Rifu)	cmocmoB190
CmoCh07G002130	Cucurbita moschata (Rifu)	cmocmoB459
CmoCh07G002130	Cucurbita maxima (Rimu)	cmacmoB240
CmoCh07G002130	Cucurbita maxima (Rimu)	cmacmoB672
CmoCh07G002130	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G002130	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G002130	Melon (DHL92) v3.5.1	cmomeB771
CmoCh07G002130	Melon (DHL92) v3.5.1	cmomeB782
CmoCh07G002130	Watermelon (Charleston Gray)	cmowcgB760
CmoCh07G002130	Watermelon (97103) v1	cmowmB809
CmoCh07G002130	Watermelon (97103) v1	cmowmB816
CmoCh07G002130	Cucurbita pepo (Zucchini)	cmocpeB801
CmoCh07G002130	Cucurbita pepo (Zucchini)	cmocpeB818
CmoCh07G002130	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G002130	Bottle gourd (USVL1VR-Ls)	cmolsiB783