CmoCh07G000270 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G000270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaA01g10330D protein
Location	Cmo_Chr07 : 174673 .. 175053 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCAAATGTGGCTTCTCTGGTGGCCGAAGAACTCCTCTGCCGCCGCCAAAACTAGCACATCCTCTGCCACCGCCGCCGTAACTGCGACTTCGCTCGCCACAAAGGTATCTTCCTCGCACTGCAACCGCATCGCCAAACTGTTGCGCAAACTGAAGAAACGCGGCAGAGTACTCTGTAGCACAACTGGAGAGAGCAGCAGCAACTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAACTTCGACACCAGCGGGTGCGGAAGCTTGTTAGATGAGCACTACTATCAGTTCTGCACTTTCTCCTCGAGATTCGCGTCCAATCCAGGAACTGTTTCTCGTCCTGCTCCTGATGGAACAGTCACTGCTTCTCGCTAG

mRNA sequence

ATGGCGCAAATGTGGCTTCTCTGGTGGCCGAAGAACTCCTCTGCCGCCGCCAAAACTAGCACATCCTCTGCCACCGCCGCCGTAACTGCGACTTCGCTCGCCACAAAGGTATCTTCCTCGCACTGCAACCGCATCGCCAAACTGTTGCGCAAACTGAAGAAACGCGGCAGAGTACTCTGTAGCACAACTGGAGAGAGCAGCAGCAACTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAACTTCGACACCAGCGGGTGCGGAAGCTTGTTAGATGAGCACTACTATCAGTTCTGCACTTTCTCCTCGAGATTCGCGTCCAATCCAGGAACTGTTTCTCGTCCTGCTCCTGATGGAACAGTCACTGCTTCTCGCTAG

Coding sequence (CDS)

ATGGCGCAAATGTGGCTTCTCTGGTGGCCGAAGAACTCCTCTGCCGCCGCCAAAACTAGCACATCCTCTGCCACCGCCGCCGTAACTGCGACTTCGCTCGCCACAAAGGTATCTTCCTCGCACTGCAACCGCATCGCCAAACTGTTGCGCAAACTGAAGAAACGCGGCAGAGTACTCTGTAGCACAACTGGAGAGAGCAGCAGCAACTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAACTTCGACACCAGCGGGTGCGGAAGCTTGTTAGATGAGCACTACTATCAGTTCTGCACTTTCTCCTCGAGATTCGCGTCCAATCCAGGAACTGTTTCTCGTCCTGCTCCTGATGGAACAGTCACTGCTTCTCGCTAG

Homology

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BLAST of CmoCh07G000270 vs. TrEMBL
Match: A0A0A0KMC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526510 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 88/124 (70.97%), Postives = 98/124 (79.03%), Query Frame = 1


Query: 7   LWWPKNSSAAAKTS--TSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLCSTTG 66
           +W P N++    TS  T++A AAVT TSLA K SSS+CN +AKLLRKLKKR RVLCSTTG
Sbjct: 1   MWLPNNNAPKTTTSSTTTTAAAAVTPTSLAPKPSSSNCNFLAKLLRKLKKRSRVLCSTTG 60

Query: 67  ESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ-FCTFSSRFASNPGTVS-RPAPDGTV 126
           ESSS FQCRYDPLSYSLNFDTSGCGSLLD+HYYQ FC FSSRFASNPG +S    P  T+
Sbjct: 61  ESSSPFQCRYDPLSYSLNFDTSGCGSLLDDHYYQYFCAFSSRFASNPGNLSTHSLPPVTL 120

[Close]

BLAST of CmoCh07G000270 vs. TrEMBL
Match: U5GRK7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00540g PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1


Query: 1   MAQMWLLWWPKNSSAAAKTST-SSATAAVTATSLATKVSSSH---CNRIAKLLRKLKKRG 60
           MAQMWLLWWPK ++    +   ++AT   T + +  ++ S+    C  + KLL+KL+KRG
Sbjct: 1   MAQMWLLWWPKTTTKIGASGVDTTATTKATNSKIVEEIGSTQTCFCGCLTKLLKKLRKRG 60

Query: 61  RVLCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCTFSSRFASNPGTVS 115
           RVL + T    S+FQCRYDPLSYSLNFDTSGCGS+L DE YYQFC F+SRF +NP   S
Sbjct: 61  RVLRTATASRQSSFQCRYDPLSYSLNFDTSGCGSMLDDEDYYQFCAFTSRFVANPSRSS 119

[Close]

BLAST of CmoCh07G000270 vs. TrEMBL
Match: A0A0S3R0V8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G177100 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 1


Query: 9   WPKNSSAAAKTSTSSATAAVTATSLATK--VSSSHCN-RIAKLLRKLKKRGRVLCSTTGE 68
           WP +S    K ++SS T+A T T++ATK  VS+ HC   + KL+RKLK+RGR L   +  
Sbjct: 6   WPLSSE---KNNSSSTTSATTNTAVATKSMVSACHCCCLVTKLMRKLKRRGRTLRPKSAS 65

Query: 69  SSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCTFSSRFASNPGTVS 115
              +FQCRYDPLSYSLNFD++GCGSL+DE YY+F  FSSRF +NP T S
Sbjct: 66  RQGSFQCRYDPLSYSLNFDSTGCGSLMDEDYYKFYAFSSRFVANPRTTS 111

[Close]

BLAST of CmoCh07G000270 vs. TrEMBL
Match: A0A0L9T375_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan45s002000 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 1


Query: 9   WPKNSSAAAKTSTSSATAAVTATSLATK--VSSSHCN-RIAKLLRKLKKRGRVLCSTTGE 68
           WP +S    K ++SS T+A T T++ATK  VS+ HC   + KL+RKLK+RGR L   +  
Sbjct: 6   WPLSSE---KNNSSSTTSATTNTAVATKSMVSACHCCCLVTKLMRKLKRRGRTLRPKSAS 65

Query: 69  SSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCTFSSRFASNPGTVS 115
              +FQCRYDPLSYSLNFD++GCGSL+DE YY+F  FSSRF +NP T S
Sbjct: 66  RQGSFQCRYDPLSYSLNFDSTGCGSLMDEDYYKFYAFSSRFVANPRTTS 111

[Close]

BLAST of CmoCh07G000270 vs. TrEMBL
Match: A0A061DVZ2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006023 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 66/139 (47.48%), Postives = 86/139 (61.87%), Query Frame = 1


Query: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSS------------HCNRIAKL 60
           MAQMWLLWWPKN+    K+   +  A  TAT+ AT   +S            +C  +A+ 
Sbjct: 1   MAQMWLLWWPKNTCTTTKSGGDTGAAGSTATTRATTGRTSSLGKNGTTRSCCNCRCLARF 60

Query: 61  LRKLKKRGRVLCSTTGES-SSNFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCTFSSRF 120
           +RK+KK+ + +  + G S  S+FQCRYDPLSYSLNFD SGCGS + DE YYQF  FSSRF
Sbjct: 61  MRKVKKQSKEMVRSAGASRQSSFQCRYDPLSYSLNFDRSGCGSSVDDEDYYQFYAFSSRF 120

Query: 121 ASNPGTVSRPAPDGTVTAS 126
            +NP +  RP    T+ A+
Sbjct: 121 VANPRS-RRPCSTHTLPAA 138

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BLAST of CmoCh07G000270 vs. TAIR10
Match: AT4G19980.1 (AT4G19980.1 unknown protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 1


Query: 22  SSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC--STTGESSSNFQCRYDPLSY 81
           ++ATA    +++ T   +     +A+L+RKLKK+GR+L   ST     S+ QCRYDP+SY
Sbjct: 13  TTATAVTKKSNVPTPTPNCCVTCLARLIRKLKKKGRLLLATSTARRQGSSLQCRYDPMSY 72

Query: 82  SLNFDTSGCGSLLD--EHYYQFCTFSSRFASNPGTVSRPAP 119
           SLNFD   CG+L D  ++Y +F  FSSR+ +    + +  P
Sbjct: 73  SLNFDGGACGTLPDDEDYYLRFYAFSSRYVTTTNNIRKRPP 113

[Close]

BLAST of CmoCh07G000270 vs. NCBI nr
Match: gi|659077954|ref|XP_008439472.1| (PREDICTED: uncharacterized protein LOC103484262 [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 8.0e-37
Identity = 89/122 (72.95%), Postives = 99/122 (81.15%), Query Frame = 1


Query: 7   LWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLCSTTGES 66
           +W PKN+  A KT+TSS TAAVT TSLA K SSSHCN +AKLLRKLKKR RVLC+TTG+S
Sbjct: 1   MWLPKNN--APKTTTSSTTAAVTPTSLAPKPSSSHCNCLAKLLRKLKKRSRVLCTTTGDS 60

Query: 67  SSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ-FCTFSSRFASNPGTVS-RPAPDGTVTA 126
           SS FQCRYDPLSYSLNFDTSGCGSL+D+HYY  FC FSSRFASNPG +S    P  T+  
Sbjct: 61  SSPFQCRYDPLSYSLNFDTSGCGSLVDDHYYHYFCAFSSRFASNPGNLSTHSLPPVTLPT 120

[Close]

BLAST of CmoCh07G000270 vs. NCBI nr
Match: gi|700194313|gb|KGN49517.1| (hypothetical protein Csa_6G526510 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 88/124 (70.97%), Postives = 98/124 (79.03%), Query Frame = 1


Query: 7   LWWPKNSSAAAKTS--TSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLCSTTG 66
           +W P N++    TS  T++A AAVT TSLA K SSS+CN +AKLLRKLKKR RVLCSTTG
Sbjct: 1   MWLPNNNAPKTTTSSTTTTAAAAVTPTSLAPKPSSSNCNFLAKLLRKLKKRSRVLCSTTG 60

Query: 67  ESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ-FCTFSSRFASNPGTVS-RPAPDGTV 126
           ESSS FQCRYDPLSYSLNFDTSGCGSLLD+HYYQ FC FSSRFASNPG +S    P  T+
Sbjct: 61  ESSSPFQCRYDPLSYSLNFDTSGCGSLLDDHYYQYFCAFSSRFASNPGNLSTHSLPPVTL 120

[Close]

BLAST of CmoCh07G000270 vs. NCBI nr
Match: gi|743808617|ref|XP_011018306.1| (PREDICTED: uncharacterized protein LOC105121392 [Populus euphratica])

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-26
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 1


Query: 1   MAQMWLLWWPKNSSAAAKTSTSS-ATAAVTATSLATKVSSSH---CNRIAKLLRKLKKRG 60
           MAQMWLLWWPK ++        + AT   T + +  K+ S+    C  + KLL+KL+KRG
Sbjct: 1   MAQMWLLWWPKTTTKIGAGGVDTIATTKATNSEIVEKIGSTQTCFCGFLTKLLKKLRKRG 60

Query: 61  RVLCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCTFSSRFASNPGTVS 115
           RV+C+ T    S+FQCRYDPLSYSLNFDTSGCGS+L DE YYQFC F+SRF +NP   S
Sbjct: 61  RVICTATASRQSSFQCRYDPLSYSLNFDTSGCGSMLDDEDYYQFCAFTSRFVANPSRSS 119

[Close]

BLAST of CmoCh07G000270 vs. NCBI nr
Match: gi|566146383|ref|XP_006368210.1| (hypothetical protein POPTR_0001s00540g [Populus trichocarpa])

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-25
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1


Query: 1   MAQMWLLWWPKNSSAAAKTST-SSATAAVTATSLATKVSSSH---CNRIAKLLRKLKKRG 60
           MAQMWLLWWPK ++    +   ++AT   T + +  ++ S+    C  + KLL+KL+KRG
Sbjct: 1   MAQMWLLWWPKTTTKIGASGVDTTATTKATNSKIVEEIGSTQTCFCGCLTKLLKKLRKRG 60

Query: 61  RVLCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCTFSSRFASNPGTVS 115
           RVL + T    S+FQCRYDPLSYSLNFDTSGCGS+L DE YYQFC F+SRF +NP   S
Sbjct: 61  RVLRTATASRQSSFQCRYDPLSYSLNFDTSGCGSMLDDEDYYQFCAFTSRFVANPSRSS 119

[Close]

BLAST of CmoCh07G000270 vs. NCBI nr
Match: gi|951006597|ref|XP_014508511.1| (PREDICTED: uncharacterized protein LOC106768054 [Vigna radiata var. radiata])

HSP 1 Score: 112.8 bits (281), Expect = 4.2e-22
Identity = 63/115 (54.78%), Postives = 80/115 (69.57%), Query Frame = 1


Query: 3   QMWLLWWPKNSSAAAKTSTSSATAAVTATSLATK--VSSSHCN-RIAKLLRKLKKRGRVL 62
           +MW L   KNSS   +  + S+T+A T  ++ATK  VS+ HC   + KL+RKLK+RGR L
Sbjct: 4   KMWPLSSEKNSSRKMQNESGSSTSATTNNAVATKSMVSACHCCCLVTKLMRKLKRRGRTL 63

Query: 63  CSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCTFSSRFASNPGTVS 115
              T     +FQCRYDPLSYSLNFD++GCGSL+DE YY+F  FSSRF +NP T S
Sbjct: 64  RPKTASRQGSFQCRYDPLSYSLNFDSTGCGSLMDEDYYKFYAFSSRFVANPRTTS 118

The following BLAST results are available for this feature:

BLAST of CmoCh07G000270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G000270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMC6_CUCSA	2.3e-35	70.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526510 PE=4 SV=1	[more]
U5GRK7_POPTR	1.7e-25	54.62	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00540g PE=4 SV=1	[more]
A0A0S3R0V8_PHAAN	1.9e-21	55.96	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G177100 PE=...	[more]
A0A0L9T375_PHAAN	1.9e-21	55.96	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan45s002000 PE=4 SV=1	[more]
A0A061DVZ2_THECC	1.9e-21	47.48	Uncharacterized protein OS=Theobroma cacao GN=TCM_006023 PE=4 SV=1	[more]

BLAST of CmoCh07G000270 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19980.1	1.3e-13	40.59	unknown protein	[more]

BLAST of CmoCh07G000270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077954\|ref\|XP_008439472.1\|	8.0e-37	72.95	PREDICTED: uncharacterized protein LOC103484262 [Cucumis melo]	[more]
gi\|700194313\|gb\|KGN49517.1\|	3.3e-35	70.97	hypothetical protein Csa_6G526510 [Cucumis sativus]	[more]
gi\|743808617\|ref\|XP_011018306.1\|	1.7e-26	55.46	PREDICTED: uncharacterized protein LOC105121392 [Populus euphratica]	[more]
gi\|566146383\|ref\|XP_006368210.1\|	2.4e-25	54.62	hypothetical protein POPTR_0001s00540g [Populus trichocarpa]	[more]
gi\|951006597\|ref\|XP_014508511.1\|	4.2e-22	54.78	PREDICTED: uncharacterized protein LOC106768054 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G000270.1	CmoCh07G000270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 42..110 score: 1.5
None	No IPR available	PANTHER	PTHR33168:SF5	SUBFAMILY NOT NAMED	coord: 42..110 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G000270	Cucsa.048780	Cucumber (Gy14) v1	cgycmoB0043
CmoCh07G000270	CmaCh03G014900	Cucurbita maxima (Rimu)	cmacmoB672
CmoCh07G000270	CmaCh07G000240	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G000270	Cla009881	Watermelon (97103) v1	cmowmB816
CmoCh07G000270	Csa6G526510	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G000270	ClCG01G025660	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G000270	CSPI06G37410	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G000270	Lsi01G000320	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G000270	Cla97C01G025800	Watermelon (97103) v2	cmowmbB849
CmoCh07G000270	Bhi03G000208	Wax gourd	cmowgoB1062
CmoCh07G000270	Carg24609	Silver-seed gourd	carcmoB1439
CmoCh07G000270	Carg14937	Silver-seed gourd	carcmoB0996

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G000270	CmoCh03G014920	Cucurbita moschata (Rifu)	cmocmoB459

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G000270	Melon (DHL92) v3.5.1	cmomeB782
CmoCh07G000270	Cucurbita pepo (Zucchini)	cmocpeB801
CmoCh07G000270	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G000270	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G000270	Melon (DHL92) v3.6.1	cmomedB886
CmoCh07G000270	Cucumber (Chinese Long) v3	cmocucB1019