CmaCh07G000240 (gene) Cucurbita maxima (Rimu)

NameCmaCh07G000240
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionBnaA01g10330D protein
LocationCma_Chr07 : 162271 .. 162651 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCAAATGTGGCTTCTCTGGTGGCCAAAGAACTCCTCTGCCGCCGCCAAATCTAGCACACCCTCTGCCACCGGTGCCGTATCTGCGACTTCGCTCGCCTCAAAGGTATCCTCCTCGCACTGCAACCGCATCGCCAAACTGTTGCGCAAACTGAAGAAACGCGGCAGAGTACTCTGTAGCACAACTGGGGAGAGCAGCAGCAACTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAACTTCGACACCAGCGGGTGCGGAAGCTTGTTAGATGAGCACTACTATCAGTTCTGCGCTTTCTCCTCGAGATTCGCGTCCAATCCAGGAACTGTTTCTCGTCCTGCCCCTGATGGAACAGTCACTGCTTCTCGCTAG

mRNA sequence

ATGGCGCAAATGTGGCTTCTCTGGTGGCCAAAGAACTCCTCTGCCGCCGCCAAATCTAGCACACCCTCTGCCACCGGTGCCGTATCTGCGACTTCGCTCGCCTCAAAGGTATCCTCCTCGCACTGCAACCGCATCGCCAAACTGTTGCGCAAACTGAAGAAACGCGGCAGAGTACTCTGTAGCACAACTGGGGAGAGCAGCAGCAACTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAACTTCGACACCAGCGGGTGCGGAAGCTTGTTAGATGAGCACTACTATCAGTTCTGCGCTTTCTCCTCGAGATTCGCGTCCAATCCAGGAACTGTTTCTCGTCCTGCCCCTGATGGAACAGTCACTGCTTCTCGCTAG

Coding sequence (CDS)

ATGGCGCAAATGTGGCTTCTCTGGTGGCCAAAGAACTCCTCTGCCGCCGCCAAATCTAGCACACCCTCTGCCACCGGTGCCGTATCTGCGACTTCGCTCGCCTCAAAGGTATCCTCCTCGCACTGCAACCGCATCGCCAAACTGTTGCGCAAACTGAAGAAACGCGGCAGAGTACTCTGTAGCACAACTGGGGAGAGCAGCAGCAACTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAACTTCGACACCAGCGGGTGCGGAAGCTTGTTAGATGAGCACTACTATCAGTTCTGCGCTTTCTCCTCGAGATTCGCGTCCAATCCAGGAACTGTTTCTCGTCCTGCCCCTGATGGAACAGTCACTGCTTCTCGCTAG

Protein sequence

MAQMWLLWWPKNSSAAAKSSTPSATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDGTVTASR
BLAST of CmaCh07G000240 vs. TrEMBL
Match: A0A0A0KMC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526510 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-35
Identity = 86/124 (69.35%), Postives = 97/124 (78.23%), Query Frame = 1

Query: 7   LWWPKNSS--AAAKSSTPSATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLCSTTG 66
           +W P N++      S+T +A  AV+ TSLA K SSS+CN +AKLLRKLKKR RVLCSTTG
Sbjct: 1   MWLPNNNAPKTTTSSTTTTAAAAVTPTSLAPKPSSSNCNFLAKLLRKLKKRSRVLCSTTG 60

Query: 67  ESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ-FCAFSSRFASNPGTVS-RPAPDGTV 126
           ESSS FQCRYDPLSYSLNFDTSGCGSLLD+HYYQ FCAFSSRFASNPG +S    P  T+
Sbjct: 61  ESSSPFQCRYDPLSYSLNFDTSGCGSLLDDHYYQYFCAFSSRFASNPGNLSTHSLPPVTL 120

BLAST of CmaCh07G000240 vs. TrEMBL
Match: U5GRK7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00540g PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.8e-26
Identity = 66/119 (55.46%), Postives = 83/119 (69.75%), Query Frame = 1

Query: 1   MAQMWLLWWPKNSSAAAKSSTPS-ATGAVSATSLASKVSSSH---CNRIAKLLRKLKKRG 60
           MAQMWLLWWPK ++    S   + AT   + + +  ++ S+    C  + KLL+KL+KRG
Sbjct: 1   MAQMWLLWWPKTTTKIGASGVDTTATTKATNSKIVEEIGSTQTCFCGCLTKLLKKLRKRG 60

Query: 61  RVLCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCAFSSRFASNPGTVS 115
           RVL + T    S+FQCRYDPLSYSLNFDTSGCGS+L DE YYQFCAF+SRF +NP   S
Sbjct: 61  RVLRTATASRQSSFQCRYDPLSYSLNFDTSGCGSMLDDEDYYQFCAFTSRFVANPSRSS 119

BLAST of CmaCh07G000240 vs. TrEMBL
Match: A0A061DVZ2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006023 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-21
Identity = 65/139 (46.76%), Postives = 86/139 (61.87%), Query Frame = 1

Query: 1   MAQMWLLWWPKNSSAAAKSSTPSATGAVSATSLASKVSSS------------HCNRIAKL 60
           MAQMWLLWWPKN+    KS   +     +AT+ A+   +S            +C  +A+ 
Sbjct: 1   MAQMWLLWWPKNTCTTTKSGGDTGAAGSTATTRATTGRTSSLGKNGTTRSCCNCRCLARF 60

Query: 61  LRKLKKRGRVLCSTTGES-SSNFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCAFSSRF 120
           +RK+KK+ + +  + G S  S+FQCRYDPLSYSLNFD SGCGS + DE YYQF AFSSRF
Sbjct: 61  MRKVKKQSKEMVRSAGASRQSSFQCRYDPLSYSLNFDRSGCGSSVDDEDYYQFYAFSSRF 120

Query: 121 ASNPGTVSRPAPDGTVTAS 126
            +NP +  RP    T+ A+
Sbjct: 121 VANPRS-RRPCSTHTLPAA 138

BLAST of CmaCh07G000240 vs. TrEMBL
Match: A0A0S3R0V8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G177100 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.3e-21
Identity = 60/107 (56.07%), Postives = 74/107 (69.16%), Query Frame = 1

Query: 9   WPKNSSAAAKSSTPSATGAVSATSLASKVSSSHCN-RIAKLLRKLKKRGRVLCSTTGESS 68
           WP +S     SST SAT   +A +  S VS+ HC   + KL+RKLK+RGR L   +    
Sbjct: 6   WPLSSEKNNSSSTTSAT-TNTAVATKSMVSACHCCCLVTKLMRKLKRRGRTLRPKSASRQ 65

Query: 69  SNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVS 115
            +FQCRYDPLSYSLNFD++GCGSL+DE YY+F AFSSRF +NP T S
Sbjct: 66  GSFQCRYDPLSYSLNFDSTGCGSLMDEDYYKFYAFSSRFVANPRTTS 111

BLAST of CmaCh07G000240 vs. TrEMBL
Match: A0A0L9T375_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan45s002000 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.3e-21
Identity = 60/107 (56.07%), Postives = 74/107 (69.16%), Query Frame = 1

Query: 9   WPKNSSAAAKSSTPSATGAVSATSLASKVSSSHCN-RIAKLLRKLKKRGRVLCSTTGESS 68
           WP +S     SST SAT   +A +  S VS+ HC   + KL+RKLK+RGR L   +    
Sbjct: 6   WPLSSEKNNSSSTTSAT-TNTAVATKSMVSACHCCCLVTKLMRKLKRRGRTLRPKSASRQ 65

Query: 69  SNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVS 115
            +FQCRYDPLSYSLNFD++GCGSL+DE YY+F AFSSRF +NP T S
Sbjct: 66  GSFQCRYDPLSYSLNFDSTGCGSLMDEDYYKFYAFSSRFVANPRTTS 111

BLAST of CmaCh07G000240 vs. TAIR10
Match: AT4G19980.1 (AT4G19980.1 unknown protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-13
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 1

Query: 23  SATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLC--STTGESSSNFQCRYDPLSYS 82
           +AT     +++ +   +     +A+L+RKLKK+GR+L   ST     S+ QCRYDP+SYS
Sbjct: 14  TATAVTKKSNVPTPTPNCCVTCLARLIRKLKKKGRLLLATSTARRQGSSLQCRYDPMSYS 73

Query: 83  LNFDTSGCGSLLD--EHYYQFCAFSSRFASNPGTVSRPAP 119
           LNFD   CG+L D  ++Y +F AFSSR+ +    + +  P
Sbjct: 74  LNFDGGACGTLPDDEDYYLRFYAFSSRYVTTTNNIRKRPP 113

BLAST of CmaCh07G000240 vs. NCBI nr
Match: gi|659077954|ref|XP_008439472.1| (PREDICTED: uncharacterized protein LOC103484262 [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 8.8e-36
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 1

Query: 7   LWWPKNSSAAAKSSTPSATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLCSTTGES 66
           +W PKN+  A K++T S T AV+ TSLA K SSSHCN +AKLLRKLKKR RVLC+TTG+S
Sbjct: 1   MWLPKNN--APKTTTSSTTAAVTPTSLAPKPSSSHCNCLAKLLRKLKKRSRVLCTTTGDS 60

Query: 67  SSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ-FCAFSSRFASNPGTVS-RPAPDGTVTA 126
           SS FQCRYDPLSYSLNFDTSGCGSL+D+HYY  FCAFSSRFASNPG +S    P  T+  
Sbjct: 61  SSPFQCRYDPLSYSLNFDTSGCGSLVDDHYYHYFCAFSSRFASNPGNLSTHSLPPVTLPT 120

BLAST of CmaCh07G000240 vs. NCBI nr
Match: gi|700194313|gb|KGN49517.1| (hypothetical protein Csa_6G526510 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 7.5e-35
Identity = 86/124 (69.35%), Postives = 97/124 (78.23%), Query Frame = 1

Query: 7   LWWPKNSS--AAAKSSTPSATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLCSTTG 66
           +W P N++      S+T +A  AV+ TSLA K SSS+CN +AKLLRKLKKR RVLCSTTG
Sbjct: 1   MWLPNNNAPKTTTSSTTTTAAAAVTPTSLAPKPSSSNCNFLAKLLRKLKKRSRVLCSTTG 60

Query: 67  ESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ-FCAFSSRFASNPGTVS-RPAPDGTV 126
           ESSS FQCRYDPLSYSLNFDTSGCGSLLD+HYYQ FCAFSSRFASNPG +S    P  T+
Sbjct: 61  ESSSPFQCRYDPLSYSLNFDTSGCGSLLDDHYYQYFCAFSSRFASNPGNLSTHSLPPVTL 120

BLAST of CmaCh07G000240 vs. NCBI nr
Match: gi|743808617|ref|XP_011018306.1| (PREDICTED: uncharacterized protein LOC105121392 [Populus euphratica])

HSP 1 Score: 129.0 bits (323), Expect = 5.7e-27
Identity = 66/119 (55.46%), Postives = 83/119 (69.75%), Query Frame = 1

Query: 1   MAQMWLLWWPKNSSAAAKSSTPS-ATGAVSATSLASKVSSSH---CNRIAKLLRKLKKRG 60
           MAQMWLLWWPK ++        + AT   + + +  K+ S+    C  + KLL+KL+KRG
Sbjct: 1   MAQMWLLWWPKTTTKIGAGGVDTIATTKATNSEIVEKIGSTQTCFCGFLTKLLKKLRKRG 60

Query: 61  RVLCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCAFSSRFASNPGTVS 115
           RV+C+ T    S+FQCRYDPLSYSLNFDTSGCGS+L DE YYQFCAF+SRF +NP   S
Sbjct: 61  RVICTATASRQSSFQCRYDPLSYSLNFDTSGCGSMLDDEDYYQFCAFTSRFVANPSRSS 119

BLAST of CmaCh07G000240 vs. NCBI nr
Match: gi|566146383|ref|XP_006368210.1| (hypothetical protein POPTR_0001s00540g [Populus trichocarpa])

HSP 1 Score: 125.2 bits (313), Expect = 8.3e-26
Identity = 66/119 (55.46%), Postives = 83/119 (69.75%), Query Frame = 1

Query: 1   MAQMWLLWWPKNSSAAAKSSTPS-ATGAVSATSLASKVSSSH---CNRIAKLLRKLKKRG 60
           MAQMWLLWWPK ++    S   + AT   + + +  ++ S+    C  + KLL+KL+KRG
Sbjct: 1   MAQMWLLWWPKTTTKIGASGVDTTATTKATNSKIVEEIGSTQTCFCGCLTKLLKKLRKRG 60

Query: 61  RVLCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCAFSSRFASNPGTVS 115
           RVL + T    S+FQCRYDPLSYSLNFDTSGCGS+L DE YYQFCAF+SRF +NP   S
Sbjct: 61  RVLRTATASRQSSFQCRYDPLSYSLNFDTSGCGSMLDDEDYYQFCAFTSRFVANPSRSS 119

BLAST of CmaCh07G000240 vs. NCBI nr
Match: gi|951006597|ref|XP_014508511.1| (PREDICTED: uncharacterized protein LOC106768054 [Vigna radiata var. radiata])

HSP 1 Score: 112.1 bits (279), Expect = 7.2e-22
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = 1

Query: 3   QMWLLWWPKNSSAAAKSSTPSATGAVSATSLASK--VSSSHCN-RIAKLLRKLKKRGRVL 62
           +MW L   KNSS   ++ + S+T A +  ++A+K  VS+ HC   + KL+RKLK+RGR L
Sbjct: 4   KMWPLSSEKNSSRKMQNESGSSTSATTNNAVATKSMVSACHCCCLVTKLMRKLKRRGRTL 63

Query: 63  CSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVS 115
              T     +FQCRYDPLSYSLNFD++GCGSL+DE YY+F AFSSRF +NP T S
Sbjct: 64  RPKTASRQGSFQCRYDPLSYSLNFDSTGCGSLMDEDYYKFYAFSSRFVANPRTTS 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KMC6_CUCSA5.2e-3569.35Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526510 PE=4 SV=1[more]
U5GRK7_POPTR5.8e-2655.46Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00540g PE=4 SV=1[more]
A0A061DVZ2_THECC3.3e-2146.76Uncharacterized protein OS=Theobroma cacao GN=TCM_006023 PE=4 SV=1[more]
A0A0S3R0V8_PHAAN7.3e-2156.07Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G177100 PE=... [more]
A0A0L9T375_PHAAN7.3e-2156.07Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan45s002000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G19980.11.7e-1340.00 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659077954|ref|XP_008439472.1|8.8e-3670.49PREDICTED: uncharacterized protein LOC103484262 [Cucumis melo][more]
gi|700194313|gb|KGN49517.1|7.5e-3569.35hypothetical protein Csa_6G526510 [Cucumis sativus][more]
gi|743808617|ref|XP_011018306.1|5.7e-2755.46PREDICTED: uncharacterized protein LOC105121392 [Populus euphratica][more]
gi|566146383|ref|XP_006368210.1|8.3e-2655.46hypothetical protein POPTR_0001s00540g [Populus trichocarpa][more]
gi|951006597|ref|XP_014508511.1|7.2e-2253.91PREDICTED: uncharacterized protein LOC106768054 [Vigna radiata var. radiata][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G000240.1CmaCh07G000240.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168FAMILY NOT NAMEDcoord: 42..110
score: 9.4
NoneNo IPR availablePANTHERPTHR33168:SF5SUBFAMILY NOT NAMEDcoord: 42..110
score: 9.4