CmaCh07G000240 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G000240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	BnaA01g10330D protein
Location	Cma_Chr07 : 162271 .. 162651 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCAAATGTGGCTTCTCTGGTGGCCAAAGAACTCCTCTGCCGCCGCCAAATCTAGCACACCCTCTGCCACCGGTGCCGTATCTGCGACTTCGCTCGCCTCAAAGGTATCCTCCTCGCACTGCAACCGCATCGCCAAACTGTTGCGCAAACTGAAGAAACGCGGCAGAGTACTCTGTAGCACAACTGGGGAGAGCAGCAGCAACTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAACTTCGACACCAGCGGGTGCGGAAGCTTGTTAGATGAGCACTACTATCAGTTCTGCGCTTTCTCCTCGAGATTCGCGTCCAATCCAGGAACTGTTTCTCGTCCTGCCCCTGATGGAACAGTCACTGCTTCTCGCTAG

mRNA sequence

ATGGCGCAAATGTGGCTTCTCTGGTGGCCAAAGAACTCCTCTGCCGCCGCCAAATCTAGCACACCCTCTGCCACCGGTGCCGTATCTGCGACTTCGCTCGCCTCAAAGGTATCCTCCTCGCACTGCAACCGCATCGCCAAACTGTTGCGCAAACTGAAGAAACGCGGCAGAGTACTCTGTAGCACAACTGGGGAGAGCAGCAGCAACTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAACTTCGACACCAGCGGGTGCGGAAGCTTGTTAGATGAGCACTACTATCAGTTCTGCGCTTTCTCCTCGAGATTCGCGTCCAATCCAGGAACTGTTTCTCGTCCTGCCCCTGATGGAACAGTCACTGCTTCTCGCTAG

Coding sequence (CDS)

ATGGCGCAAATGTGGCTTCTCTGGTGGCCAAAGAACTCCTCTGCCGCCGCCAAATCTAGCACACCCTCTGCCACCGGTGCCGTATCTGCGACTTCGCTCGCCTCAAAGGTATCCTCCTCGCACTGCAACCGCATCGCCAAACTGTTGCGCAAACTGAAGAAACGCGGCAGAGTACTCTGTAGCACAACTGGGGAGAGCAGCAGCAACTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAACTTCGACACCAGCGGGTGCGGAAGCTTGTTAGATGAGCACTACTATCAGTTCTGCGCTTTCTCCTCGAGATTCGCGTCCAATCCAGGAACTGTTTCTCGTCCTGCCCCTGATGGAACAGTCACTGCTTCTCGCTAG

Protein sequence

MAQMWLLWWPKNSSAAAKSSTPSATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDGTVTASR

Homology

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BLAST of CmaCh07G000240 vs. TrEMBL
Match: A0A0A0KMC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526510 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-35
Identity = 86/124 (69.35%), Postives = 97/124 (78.23%), Query Frame = 1


Query: 7   LWWPKNSS--AAAKSSTPSATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLCSTTG 66
           +W P N++      S+T +A  AV+ TSLA K SSS+CN +AKLLRKLKKR RVLCSTTG
Sbjct: 1   MWLPNNNAPKTTTSSTTTTAAAAVTPTSLAPKPSSSNCNFLAKLLRKLKKRSRVLCSTTG 60

Query: 67  ESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ-FCAFSSRFASNPGTVS-RPAPDGTV 126
           ESSS FQCRYDPLSYSLNFDTSGCGSLLD+HYYQ FCAFSSRFASNPG +S    P  T+
Sbjct: 61  ESSSPFQCRYDPLSYSLNFDTSGCGSLLDDHYYQYFCAFSSRFASNPGNLSTHSLPPVTL 120

[Close]

BLAST of CmaCh07G000240 vs. TrEMBL
Match: U5GRK7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00540g PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.8e-26
Identity = 66/119 (55.46%), Postives = 83/119 (69.75%), Query Frame = 1


Query: 1   MAQMWLLWWPKNSSAAAKSSTPS-ATGAVSATSLASKVSSSH---CNRIAKLLRKLKKRG 60
           MAQMWLLWWPK ++    S   + AT   + + +  ++ S+    C  + KLL+KL+KRG
Sbjct: 1   MAQMWLLWWPKTTTKIGASGVDTTATTKATNSKIVEEIGSTQTCFCGCLTKLLKKLRKRG 60

Query: 61  RVLCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCAFSSRFASNPGTVS 115
           RVL + T    S+FQCRYDPLSYSLNFDTSGCGS+L DE YYQFCAF+SRF +NP   S
Sbjct: 61  RVLRTATASRQSSFQCRYDPLSYSLNFDTSGCGSMLDDEDYYQFCAFTSRFVANPSRSS 119

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BLAST of CmaCh07G000240 vs. TrEMBL
Match: A0A061DVZ2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006023 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-21
Identity = 65/139 (46.76%), Postives = 86/139 (61.87%), Query Frame = 1


Query: 1   MAQMWLLWWPKNSSAAAKSSTPSATGAVSATSLASKVSSS------------HCNRIAKL 60
           MAQMWLLWWPKN+    KS   +     +AT+ A+   +S            +C  +A+ 
Sbjct: 1   MAQMWLLWWPKNTCTTTKSGGDTGAAGSTATTRATTGRTSSLGKNGTTRSCCNCRCLARF 60

Query: 61  LRKLKKRGRVLCSTTGES-SSNFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCAFSSRF 120
           +RK+KK+ + +  + G S  S+FQCRYDPLSYSLNFD SGCGS + DE YYQF AFSSRF
Sbjct: 61  MRKVKKQSKEMVRSAGASRQSSFQCRYDPLSYSLNFDRSGCGSSVDDEDYYQFYAFSSRF 120

Query: 121 ASNPGTVSRPAPDGTVTAS 126
            +NP +  RP    T+ A+
Sbjct: 121 VANPRS-RRPCSTHTLPAA 138

[Close]

BLAST of CmaCh07G000240 vs. TrEMBL
Match: A0A0S3R0V8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G177100 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.3e-21
Identity = 60/107 (56.07%), Postives = 74/107 (69.16%), Query Frame = 1


Query: 9   WPKNSSAAAKSSTPSATGAVSATSLASKVSSSHCN-RIAKLLRKLKKRGRVLCSTTGESS 68
           WP +S     SST SAT   +A +  S VS+ HC   + KL+RKLK+RGR L   +    
Sbjct: 6   WPLSSEKNNSSSTTSAT-TNTAVATKSMVSACHCCCLVTKLMRKLKRRGRTLRPKSASRQ 65

Query: 69  SNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVS 115
            +FQCRYDPLSYSLNFD++GCGSL+DE YY+F AFSSRF +NP T S
Sbjct: 66  GSFQCRYDPLSYSLNFDSTGCGSLMDEDYYKFYAFSSRFVANPRTTS 111

[Close]

BLAST of CmaCh07G000240 vs. TrEMBL
Match: A0A0L9T375_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan45s002000 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.3e-21
Identity = 60/107 (56.07%), Postives = 74/107 (69.16%), Query Frame = 1


Query: 9   WPKNSSAAAKSSTPSATGAVSATSLASKVSSSHCN-RIAKLLRKLKKRGRVLCSTTGESS 68
           WP +S     SST SAT   +A +  S VS+ HC   + KL+RKLK+RGR L   +    
Sbjct: 6   WPLSSEKNNSSSTTSAT-TNTAVATKSMVSACHCCCLVTKLMRKLKRRGRTLRPKSASRQ 65

Query: 69  SNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVS 115
            +FQCRYDPLSYSLNFD++GCGSL+DE YY+F AFSSRF +NP T S
Sbjct: 66  GSFQCRYDPLSYSLNFDSTGCGSLMDEDYYKFYAFSSRFVANPRTTS 111

[Close]

BLAST of CmaCh07G000240 vs. TAIR10
Match: AT4G19980.1 (AT4G19980.1 unknown protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-13
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 1


Query: 23  SATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLC--STTGESSSNFQCRYDPLSYS 82
           +AT     +++ +   +     +A+L+RKLKK+GR+L   ST     S+ QCRYDP+SYS
Sbjct: 14  TATAVTKKSNVPTPTPNCCVTCLARLIRKLKKKGRLLLATSTARRQGSSLQCRYDPMSYS 73

Query: 83  LNFDTSGCGSLLD--EHYYQFCAFSSRFASNPGTVSRPAP 119
           LNFD   CG+L D  ++Y +F AFSSR+ +    + +  P
Sbjct: 74  LNFDGGACGTLPDDEDYYLRFYAFSSRYVTTTNNIRKRPP 113

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BLAST of CmaCh07G000240 vs. NCBI nr
Match: gi|659077954|ref|XP_008439472.1| (PREDICTED: uncharacterized protein LOC103484262 [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 8.8e-36
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 1


Query: 7   LWWPKNSSAAAKSSTPSATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLCSTTGES 66
           +W PKN+  A K++T S T AV+ TSLA K SSSHCN +AKLLRKLKKR RVLC+TTG+S
Sbjct: 1   MWLPKNN--APKTTTSSTTAAVTPTSLAPKPSSSHCNCLAKLLRKLKKRSRVLCTTTGDS 60

Query: 67  SSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ-FCAFSSRFASNPGTVS-RPAPDGTVTA 126
           SS FQCRYDPLSYSLNFDTSGCGSL+D+HYY  FCAFSSRFASNPG +S    P  T+  
Sbjct: 61  SSPFQCRYDPLSYSLNFDTSGCGSLVDDHYYHYFCAFSSRFASNPGNLSTHSLPPVTLPT 120

[Close]

BLAST of CmaCh07G000240 vs. NCBI nr
Match: gi|700194313|gb|KGN49517.1| (hypothetical protein Csa_6G526510 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 7.5e-35
Identity = 86/124 (69.35%), Postives = 97/124 (78.23%), Query Frame = 1


Query: 7   LWWPKNSS--AAAKSSTPSATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLCSTTG 66
           +W P N++      S+T +A  AV+ TSLA K SSS+CN +AKLLRKLKKR RVLCSTTG
Sbjct: 1   MWLPNNNAPKTTTSSTTTTAAAAVTPTSLAPKPSSSNCNFLAKLLRKLKKRSRVLCSTTG 60

Query: 67  ESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ-FCAFSSRFASNPGTVS-RPAPDGTV 126
           ESSS FQCRYDPLSYSLNFDTSGCGSLLD+HYYQ FCAFSSRFASNPG +S    P  T+
Sbjct: 61  ESSSPFQCRYDPLSYSLNFDTSGCGSLLDDHYYQYFCAFSSRFASNPGNLSTHSLPPVTL 120

[Close]

BLAST of CmaCh07G000240 vs. NCBI nr
Match: gi|743808617|ref|XP_011018306.1| (PREDICTED: uncharacterized protein LOC105121392 [Populus euphratica])

HSP 1 Score: 129.0 bits (323), Expect = 5.7e-27
Identity = 66/119 (55.46%), Postives = 83/119 (69.75%), Query Frame = 1


Query: 1   MAQMWLLWWPKNSSAAAKSSTPS-ATGAVSATSLASKVSSSH---CNRIAKLLRKLKKRG 60
           MAQMWLLWWPK ++        + AT   + + +  K+ S+    C  + KLL+KL+KRG
Sbjct: 1   MAQMWLLWWPKTTTKIGAGGVDTIATTKATNSEIVEKIGSTQTCFCGFLTKLLKKLRKRG 60

Query: 61  RVLCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCAFSSRFASNPGTVS 115
           RV+C+ T    S+FQCRYDPLSYSLNFDTSGCGS+L DE YYQFCAF+SRF +NP   S
Sbjct: 61  RVICTATASRQSSFQCRYDPLSYSLNFDTSGCGSMLDDEDYYQFCAFTSRFVANPSRSS 119

[Close]

BLAST of CmaCh07G000240 vs. NCBI nr
Match: gi|566146383|ref|XP_006368210.1| (hypothetical protein POPTR_0001s00540g [Populus trichocarpa])

HSP 1 Score: 125.2 bits (313), Expect = 8.3e-26
Identity = 66/119 (55.46%), Postives = 83/119 (69.75%), Query Frame = 1


Query: 1   MAQMWLLWWPKNSSAAAKSSTPS-ATGAVSATSLASKVSSSH---CNRIAKLLRKLKKRG 60
           MAQMWLLWWPK ++    S   + AT   + + +  ++ S+    C  + KLL+KL+KRG
Sbjct: 1   MAQMWLLWWPKTTTKIGASGVDTTATTKATNSKIVEEIGSTQTCFCGCLTKLLKKLRKRG 60

Query: 61  RVLCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCAFSSRFASNPGTVS 115
           RVL + T    S+FQCRYDPLSYSLNFDTSGCGS+L DE YYQFCAF+SRF +NP   S
Sbjct: 61  RVLRTATASRQSSFQCRYDPLSYSLNFDTSGCGSMLDDEDYYQFCAFTSRFVANPSRSS 119

[Close]

BLAST of CmaCh07G000240 vs. NCBI nr
Match: gi|951006597|ref|XP_014508511.1| (PREDICTED: uncharacterized protein LOC106768054 [Vigna radiata var. radiata])

HSP 1 Score: 112.1 bits (279), Expect = 7.2e-22
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = 1


Query: 3   QMWLLWWPKNSSAAAKSSTPSATGAVSATSLASK--VSSSHCN-RIAKLLRKLKKRGRVL 62
           +MW L   KNSS   ++ + S+T A +  ++A+K  VS+ HC   + KL+RKLK+RGR L
Sbjct: 4   KMWPLSSEKNSSRKMQNESGSSTSATTNNAVATKSMVSACHCCCLVTKLMRKLKRRGRTL 63

Query: 63  CSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVS 115
              T     +FQCRYDPLSYSLNFD++GCGSL+DE YY+F AFSSRF +NP T S
Sbjct: 64  RPKTASRQGSFQCRYDPLSYSLNFDSTGCGSLMDEDYYKFYAFSSRFVANPRTTS 118

The following BLAST results are available for this feature:

BLAST of CmaCh07G000240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh07G000240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMC6_CUCSA	5.2e-35	69.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526510 PE=4 SV=1	[more]
U5GRK7_POPTR	5.8e-26	55.46	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00540g PE=4 SV=1	[more]
A0A061DVZ2_THECC	3.3e-21	46.76	Uncharacterized protein OS=Theobroma cacao GN=TCM_006023 PE=4 SV=1	[more]
A0A0S3R0V8_PHAAN	7.3e-21	56.07	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G177100 PE=...	[more]
A0A0L9T375_PHAAN	7.3e-21	56.07	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan45s002000 PE=4 SV=1	[more]

BLAST of CmaCh07G000240 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19980.1	1.7e-13	40.00	unknown protein	[more]

BLAST of CmaCh07G000240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077954\|ref\|XP_008439472.1\|	8.8e-36	70.49	PREDICTED: uncharacterized protein LOC103484262 [Cucumis melo]	[more]
gi\|700194313\|gb\|KGN49517.1\|	7.5e-35	69.35	hypothetical protein Csa_6G526510 [Cucumis sativus]	[more]
gi\|743808617\|ref\|XP_011018306.1\|	5.7e-27	55.46	PREDICTED: uncharacterized protein LOC105121392 [Populus euphratica]	[more]
gi\|566146383\|ref\|XP_006368210.1\|	8.3e-26	55.46	hypothetical protein POPTR_0001s00540g [Populus trichocarpa]	[more]
gi\|951006597\|ref\|XP_014508511.1\|	7.2e-22	53.91	PREDICTED: uncharacterized protein LOC106768054 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G000240.1	CmaCh07G000240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 42..110 score: 9.4
None	No IPR available	PANTHER	PTHR33168:SF5	SUBFAMILY NOT NAMED	coord: 42..110 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh07G000240	Cucsa.048780	Cucumber (Gy14) v1	cgycmaB0048
CmaCh07G000240	Cla009881	Watermelon (97103) v1	cmawmB826
CmaCh07G000240	Csa6G526510	Cucumber (Chinese Long) v2	cmacuB877
CmaCh07G000240	ClCG01G025660	Watermelon (Charleston Gray)	cmawcgB754
CmaCh07G000240	CSPI06G37410	Wild cucumber (PI 183967)	cmacpiB893
CmaCh07G000240	CmoCh07G000270	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G000240	CmoCh03G014920	Cucurbita moschata (Rifu)	cmacmoB861
CmaCh07G000240	Lsi01G000320	Bottle gourd (USVL1VR-Ls)	cmalsiB786
CmaCh07G000240	Cla97C01G025800	Watermelon (97103) v2	cmawmbB875
CmaCh07G000240	Bhi03G000208	Wax gourd	cmawgoB1069
CmaCh07G000240	Carg14937	Silver-seed gourd	carcmaB1024
CmaCh07G000240	Carg24609	Silver-seed gourd	carcmaB1482

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh07G000240	CmaCh03G014900	Cucurbita maxima (Rimu)	cmacmaB528

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh07G000240	Cucumber (Chinese Long) v3	cmacucB1035
CmaCh07G000240	Melon (DHL92) v3.5.1	cmameB798
CmaCh07G000240	Cucurbita pepo (Zucchini)	cmacpeB861
CmaCh07G000240	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G000240	Cucumber (Gy14) v2	cgybcmaB861
CmaCh07G000240	Melon (DHL92) v3.6.1	cmamedB897