Cla97C01G025800 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G025800
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	BnaC01g41340D protein
Location	Cla97Chr01 : 36607368 .. 36607748 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCAAATGTGGCTTCTCTGGTGGCCGAAGAACAACGCCTCCGCCAAAACTGCCACTTCCTCCACCTCCGGCGCCGTTACTGCTACTTCCGTCGCCCGGAAGCCATCCTCCTCCCACTGCAACTGCGTCGCCAAGCTGTTGCGCAAACTGAAGAAACGCAGCAGAGTACTGTGTAGCACCACCGGAGAGAGCAGCAGCAGCGCCTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAATTTCGACACCAGCGGCTGCGGAAGCTTGTTAGATGAACATTACTATCAGTTCTGCGCTTTCTCTTCCAGATTCGCGTCCAATCCAGGAAATGTTTCTCATTCTGCTCCCCACGTAACAGTCACTACTTCTCGCTAG

mRNA sequence

ATGACGCAAATGTGGCTTCTCTGGTGGCCGAAGAACAACGCCTCCGCCAAAACTGCCACTTCCTCCACCTCCGGCGCCGTTACTGCTACTTCCGTCGCCCGGAAGCCATCCTCCTCCCACTGCAACTGCGTCGCCAAGCTGTTGCGCAAACTGAAGAAACGCAGCAGAGTACTGTGTAGCACCACCGGAGAGAGCAGCAGCAGCGCCTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAATTTCGACACCAGCGGCTGCGGAAGCTTGTTAGATGAACATTACTATCAGTTCTGCGCTTTCTCTTCCAGATTCGCGTCCAATCCAGGAAATGTTTCTCATTCTGCTCCCCACGTAACAGTCACTACTTCTCGCTAG

Coding sequence (CDS)

ATGACGCAAATGTGGCTTCTCTGGTGGCCGAAGAACAACGCCTCCGCCAAAACTGCCACTTCCTCCACCTCCGGCGCCGTTACTGCTACTTCCGTCGCCCGGAAGCCATCCTCCTCCCACTGCAACTGCGTCGCCAAGCTGTTGCGCAAACTGAAGAAACGCAGCAGAGTACTGTGTAGCACCACCGGAGAGAGCAGCAGCAGCGCCTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAATTTCGACACCAGCGGCTGCGGAAGCTTGTTAGATGAACATTACTATCAGTTCTGCGCTTTCTCTTCCAGATTCGCGTCCAATCCAGGAAATGTTTCTCATTCTGCTCCCCACGTAACAGTCACTACTTCTCGCTAG

Protein sequence

MTQMWLLWWPKNNASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGNVSHSAPHVTVTTSR

Homology

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BLAST of Cla97C01G025800 vs. NCBI nr
Match: XP_022977244.1 (uncharacterized protein LOC111477613 [Cucurbita maxima])

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 103/123 (83.74%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 4   MWLLWWPKNNASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTG 63
           MWLLWWPKNNAS+   T ++S AVTATS+ARK SSS+ NC AKLLRKLKKRSRVL ST G
Sbjct: 1   MWLLWWPKNNASSGAKTCTSSAAVTATSLARKASSSNYNCFAKLLRKLKKRSRVLRSTAG 60

Query: 64  ESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGNVSHSAPHVTVT 123
           ESSS+ FQCRYDPLSYSLNFDTSGCG LLDEHYYQ+CAFSSRFASNPGNVSHSAP VTVT
Sbjct: 61  ESSST-FQCRYDPLSYSLNFDTSGCGGLLDEHYYQYCAFSSRFASNPGNVSHSAPVVTVT 120

Query: 124 TSR 127
           TSR
Sbjct: 121 TSR 122

[Close]

BLAST of Cla97C01G025800 vs. NCBI nr
Match: XP_023003625.1 (uncharacterized protein LOC111497167 [Cucurbita maxima])

HSP 1 Score: 197.2 bits (500), Expect = 3.3e-47
Identity = 103/127 (81.10%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 1   MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLC 60
           M QMWLLWWPKN +A+AK++T S +GAV+ATS+A K SSSHCN +AKLLRKLKKR RVLC
Sbjct: 1   MAQMWLLWWPKNSSAAAKSSTPSATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLC 60

Query: 61  STTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGNVSHSAPH 120
           STTGESSS+ FQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPG VS  AP 
Sbjct: 61  STTGESSSN-FQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPD 120

Query: 121 VTVTTSR 127
            TVT SR
Sbjct: 121 GTVTASR 126

[Close]

BLAST of Cla97C01G025800 vs. NCBI nr
Match: XP_022925663.1 (uncharacterized protein LOC111433012 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 6.3e-46
Identity = 100/123 (81.30%), Postives = 105/123 (85.37%), Query Frame = 0


Query: 4   MWLLWWPKNNASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTG 63
           MWLLWWPKNNASA   T ++S AV     ARK SSS+CNC AKLLRKLKKRSRVL ST G
Sbjct: 1   MWLLWWPKNNASADAKTCTSSAAVXXXXXARKASSSNCNCFAKLLRKLKKRSRVLRSTAG 60

Query: 64  ESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGNVSHSAPHVTVT 123
           ESSS+ FQCRYDPLSYSLNFDTSGCG LLDEHYYQ+CAFSSRFASNPGNVSHSAP  TVT
Sbjct: 61  ESSST-FQCRYDPLSYSLNFDTSGCGGLLDEHYYQYCAFSSRFASNPGNVSHSAPVATVT 120

Query: 124 TSR 127
           TSR
Sbjct: 121 TSR 122

[Close]

BLAST of Cla97C01G025800 vs. NCBI nr
Match: XP_023518962.1 (uncharacterized protein LOC111782330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-43
Identity = 98/127 (77.17%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 1   MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLC 60
           M QMWLLWWPKN +A+AKT+          TS+A K SSSHCN +AKLLRKLKKR RVLC
Sbjct: 1   MAQMWLLWWPKNSSAAAKTSXXXXXXXXXXTSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60

Query: 61  STTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGNVSHSAPH 120
           STTGESSS+ FQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPG VS  AP 
Sbjct: 61  STTGESSSN-FQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPD 120

Query: 121 VTVTTSR 127
            TVT SR
Sbjct: 121 GTVTASR 126

[Close]

BLAST of Cla97C01G025800 vs. NCBI nr
Match: XP_022146664.1 (uncharacterized protein LOC111015812 [Momordica charantia])

HSP 1 Score: 174.9 bits (442), Expect = 1.8e-40
Identity = 95/128 (74.22%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 1   MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPS-SSHCNCVAKLLRKLKKRSRVL 60
           MTQMWLLWWPK  +                 S+A+K S SSHCNCVAKLLRKLKKR RVL
Sbjct: 1   MTQMWLLWWPKTVSXXXXXXXXXXXXXXXXXSLAKKASPSSHCNCVAKLLRKLKKRGRVL 60

Query: 61  CSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGNVSHSAP 120
           CST+GE  SSAFQCRYDPLSYSLNFDTSGCGSLLDE YYQFCAFSSRFASNPGN SHS P
Sbjct: 61  CSTSGE--SSAFQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVP 120

Query: 121 HVTVTTSR 127
            VTVT SR
Sbjct: 121 DVTVTASR 126

[Close]

BLAST of Cla97C01G025800 vs. TrEMBL
Match: tr|A0A0A0KMC6|A0A0A0KMC6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526510 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.2e-34
Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 32  VARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSL 91
           +A KPSSS+CN +AKLLRKLKKRSRVLCSTTGE SSS FQCRYDPLSYSLNFDTSGCGSL
Sbjct: 29  LAPKPSSSNCNFLAKLLRKLKKRSRVLCSTTGE-SSSPFQCRYDPLSYSLNFDTSGCGSL 88

Query: 92  LDEHYYQ-FCAFSSRFASNPGNVS-HSAPHVTVTTSR 127
           LD+HYYQ FCAFSSRFASNPGN+S HS P VT+ TSR
Sbjct: 89  LDDHYYQYFCAFSSRFASNPGNLSTHSLPPVTLPTSR 124

[Close]

BLAST of Cla97C01G025800 vs. TrEMBL
Match: tr|A0A2K2BWH7|A0A2K2BWH7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G123300v3 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.5e-24
Identity = 68/118 (57.63%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 1   MTQMWLLWWPKN----NASAKTATSSTSGAVTATSVARKPSSSH---CNCVAKLLRKLKK 60
           M QMWLLWWPK      AS    T++T    T T +  +  S+    C C+ KLL+KL+K
Sbjct: 1   MAQMWLLWWPKTTTKIGASGVDTTATTK--ATNTKIVEEIGSTQTCFCGCLTKLLKKLRK 60

Query: 61  RSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLL-DEHYYQFCAFSSRFASNP 111
           R RVL + T  S  S+FQCRYDPLSYSLNFDTSGCGS+L DE YYQFCAF+SRF +NP
Sbjct: 61  RGRVLRTATA-SRQSSFQCRYDPLSYSLNFDTSGCGSMLDDEDYYQFCAFTSRFVANP 115

[Close]

BLAST of Cla97C01G025800 vs. TrEMBL
Match: tr|A0A2P5EUU4|A0A2P5EUU4_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_149580 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-24
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MTQMWLLWWPKNNASAK----TATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSR 60
           MTQMWLLWWPKN  S K      T++T+ +   +S  R  +SSHC C+ K++RKLKK +R
Sbjct: 1   MTQMWLLWWPKNTFSTKRHSEAVTTATTASTAISSCNRFSTSSHCPCLTKMMRKLKKHAR 60

Query: 61  VLCSTTGESSSSAFQCRYDPLSYSLNFD--TSGCGSLLDEHYYQFCAFSSRFASNP 111
           ++         S  QC YDPLSYSLNFD  ++GC +LLDE YYQFCAFSSRF +NP
Sbjct: 61  MI-GLAPSRQVSTLQCSYDPLSYSLNFDDTSTGCRNLLDEDYYQFCAFSSRFVANP 115

[Close]

BLAST of Cla97C01G025800 vs. TrEMBL
Match: tr|A0A2P4HY59|A0A2P4HY59_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_58323 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.5e-22
Identity = 68/142 (47.89%), Postives = 82/142 (57.75%), Query Frame = 0


Query: 4   MWLLWWPKNNASAKTATS--------------------STSGAVTATSVARKPSSSHCNC 63
           MWL WWPKN +   T +                                 R  SSSHC+C
Sbjct: 1   MWLHWWPKNTSPTTTKSGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNASSSHCSC 60

Query: 64  VAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFS 123
           +AKL++KLK+RS+ L +TT  S  S+FQCRYDPLSYSLNFD++GCGSLLDE YY F +FS
Sbjct: 61  LAKLVKKLKRRSKGLRATT--SRQSSFQCRYDPLSYSLNFDSTGCGSLLDEDYYHFYSFS 120

Query: 124 SRFASNPGNVSHSAPHVTVTTS 126
           SRF +NP     S P V V TS
Sbjct: 121 SRFVANPRLT--SCPRVLVATS 138

[Close]

BLAST of Cla97C01G025800 vs. TrEMBL
Match: tr|A0A2P5BJX6|A0A2P5BJX6_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_232410 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 1   MTQMWLLWWPKNNASAK----TATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSR 60
           MTQMW LWWPKN  + K    T T                +SSHC C+ K++RKLKK +R
Sbjct: 1   MTQMWPLWWPKNTFTTKRHGETVTXXXXXXXXXXXXXXXXTSSHCPCLTKMMRKLKKHAR 60

Query: 61  VLCSTTGESSSSAFQCRYDPLSYSLNFD--TSGCGSLLDEHYYQFCAFSSRFASNP 111
           ++        +S  QC YDPLSYSLNFD  ++GC +LLDE YYQFCAFSSRF +NP
Sbjct: 61  MI-GLAPSQQASTLQCSYDPLSYSLNFDDTSTGCRNLLDEDYYQFCAFSSRFVANP 115

[Close]

BLAST of Cla97C01G025800 vs. TAIR10
Match: AT4G19980.1 (unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 8.2e-16
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 21  SSTSGAVTATSVARKPSSSHC-NCVAKLLRKLKKRSRVLCST-TGESSSSAFQCRYDPLS 80
           ++T+ AVT  S    P+ + C  C+A+L+RKLKK+ R+L +T T     S+ QCRYDP+S
Sbjct: 12  ATTATAVTKKSNVPTPTPNCCVTCLARLIRKLKKKGRLLLATSTARRQGSSLQCRYDPMS 71

Query: 81  YSLNFDTSGCGSLLD--EHYYQFCAFSSRFASNPGNVSHSAP 119
           YSLNFD   CG+L D  ++Y +F AFSSR+ +   N+    P
Sbjct: 72  YSLNFDGGACGTLPDDEDYYLRFYAFSSRYVTTTNNIRKRPP 113

The following BLAST results are available for this feature:

BLAST of Cla97C01G025800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977244.1	1.9e-47	83.74	uncharacterized protein LOC111477613 [Cucurbita maxima]	[more]
XP_023003625.1	3.3e-47	81.10	uncharacterized protein LOC111497167 [Cucurbita maxima]	[more]
XP_022925663.1	6.3e-46	81.30	uncharacterized protein LOC111433012 [Cucurbita moschata]	[more]
XP_023518962.1	2.9e-43	77.17	uncharacterized protein LOC111782330 [Cucurbita pepo subsp. pepo]	[more]
XP_022146664.1	1.8e-40	74.22	uncharacterized protein LOC111015812 [Momordica charantia]	[more]

BLAST of Cla97C01G025800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMC6\|A0A0A0KMC6_CUCSA	6.2e-34	84.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526510 PE=4 SV=1	[more]
tr\|A0A2K2BWH7\|A0A2K2BWH7_POPTR	4.5e-24	57.63	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G123300v3 PE=...	[more]
tr\|A0A2P5EUU4\|A0A2P5EUU4_9ROSA	5.8e-24	54.31	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_149580 PE=4 S...	[more]
tr\|A0A2P4HY59\|A0A2P4HY59_QUESU	5.5e-22	47.89	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_58323 PE=4 SV=1	[more]
tr\|A0A2P5BJX6\|A0A2P5BJX6_PARAD	1.0e-20	50.86	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_232410 PE...	[more]

BLAST of Cla97C01G025800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G025800 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19980.1	8.2e-16	45.10	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G025800.1	Cla97C01G025800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 15..118
None	No IPR available	PANTHER	PTHR33168:SF5	SUBFAMILY NOT NAMED	coord: 15..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G025800	Cla009881	Watermelon (97103) v1	wmwmbB234
Cla97C01G025800	Csa6G526510	Cucumber (Chinese Long) v2	cuwmbB412
Cla97C01G025800	ClCG01G025660	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G025800	CSPI06G37410	Wild cucumber (PI 183967)	cpiwmbB433
Cla97C01G025800	Cucsa.048780	Cucumber (Gy14) v1	cgywmbB017
Cla97C01G025800	CmaCh03G014900	Cucurbita maxima (Rimu)	cmawmbB667
Cla97C01G025800	CmaCh07G000240	Cucurbita maxima (Rimu)	cmawmbB875
Cla97C01G025800	CmoCh03G014920	Cucurbita moschata (Rifu)	cmowmbB639
Cla97C01G025800	CmoCh07G000270	Cucurbita moschata (Rifu)	cmowmbB849
Cla97C01G025800	Lsi01G000320	Bottle gourd (USVL1VR-Ls)	lsiwmbB115
Cla97C01G025800	Carg14937	Silver-seed gourd	carwmbB0764
Cla97C01G025800	Carg24609	Silver-seed gourd	carwmbB1128
Cla97C01G025800	Bhi03G000208	Wax gourd	wgowmbB396

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G025800	Cucumber (Gy14) v2	cgybwmbB394
Cla97C01G025800	Cucumber (Chinese Long) v3	cucwmbB430
Cla97C01G025800	Melon (DHL92) v3.6.1	medwmbB507
Cla97C01G025800	Melon (DHL92) v3.5.1	mewmbB515