CmoCh06G016580 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G016580
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Membrane insertase YidC
Location	Cmo_Chr06 : 11494315 .. 11496384 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTCTATTCACTCGCTTTATAAACGGAGACCCATTTCTCCAACTCTGCCGCGGACACGTTTTACAGAACGAGAGGCGAGTTTGAAAAACGAGAAAAAAATGGGAAGTGGTTTCTTTAGCGAATCTGAATTATGGGTTTCTTCTGTGAATGAAGTTCGAGAAGACCCAGACGAGGATTCCTCCATTGAAGAGGGTGAGGAAATCGGGTCGGATTCGGATTTGGACGAGTCGGTTCAAATGGGGATGGAAAATTTGACGAAGAAGATGAAGAAGAAGAAGAAGAAGAATCATGTTTTGCTTGAGGGGTTTGTGGAGGATGAGGATGAGTTGATGAGGACGAAGAGCTTGACGGATGAGGATCTGGATGAGCTTAAAGGGTGTGTGGATCTAGGGTTTGGTTTCAGTTACGATGAGATTCCGGAGCTCTGCAACACTCTGCCGGCGTTGGAGCTCTGTTATTCCATGAGCCAAAAGTACATGGACGAGCACCAGAAGTCGCCGGAGAGCTCGACGGCGTTGGATTCGTGTTCGTCAGTGTCGAGTCCGATTGCGAATTGGAAGATCTCCAGTCCTGGTTAGTGGCTCTTTTCTGTTGGATCTTGATTTTGGAACTGGATTTGTTTCTTTTTTTCGTGCATTTCTGTTTATCTGGATTATGTAGCTCGTTTATGATTTGAAAGCAGTTTGAATCGAGAATGAGGTGATGACTGTTGAAATTTAGGGACTAGAATGGAGTTTTTCCAATAGTTAGAACTCTAAAATAGAATGGATAAGTATGAGAATTGACAGATTTAGGGTCTGTTTAGGTTTTTGTTCTTTACTGGTGGGGTGGAGGCAACAGTTTTCGATTTGTCTTCACTCTAACCTGTGCTTATCACTTTGAATTTCGTGGGGATTCTCAACTTATAACTTCAAAACTTATCACATACAAACCATATGATTATAATGCACAGGATTCCAGTTTGTATTTGTCCTTCTTTTCTCTAGATCACAATTTTTTTTATACCTTTTATAGGAATGGTTCTGAATTTTTGGTGATGTTTGGTCATATAGGTGATCATCCAGAAGATGTTAAGGCAAGGCTCAAATTTTGGGCTCAGGCAGTGGCATGTACTGTTAGATTATGCAACTAAGAAGCATCATCACTAGATTTGGCAGAGAAAAAGGAATGCGTCTTTTGCACTAGTACCCTTTAGCCTTATGGTGAACCGACTTGACACGCGTCCGAGTAAAGATGGAACGAATGAACGACGGGTTGTATGATGAGTCTGACTTATGAAGATGAAGAAGAGGATGATGAATGTATCAGGTTTGAGATTAACCATACCCCAAAATGAGTCTGACTAAGATATATTTTGTATAATATGTAGTTCTTTTTGTAAAATTGGGAATAAATTTATGATAATGATATGAATAAGTTCATCAAATCTGTTTCTTGTTTTTTGATTTGGTTGGTTTAAGCAGTAGTTGATGGTTTTTATGCAGTGGGTTTGACTCTTTGAGAGGTTAGCTTCCATAACACCCAACCCAACACCCCAAGTCTCTTTCACTGACCTTTTTGCATATGCTGAGGTAACTAACAGTGTTAACTTAACCCATCATCAACTTTGGCTCTCTTTTTTCTGTTTTGACCCCATTTCTGAAGGTAACTGACACTGACTTTACTAACTATCAGGTTTTGTCAATGGAAAGCAAGGGAGAATGTTGATTCTTTGTTATTCCAATGTCTGAGTAGGGAAGTTCTTGGTTTTTGATTTTGAGTTGTAGATGGTATAATCTCTTTTATGCTATTCAACGACTCCAAAATTGGATCGAGACCAGGGAACATGTCGTCCCTGCTTATGATTTCTAGTCTCCCTTCACGGCTTGAATGCCATAGAAGAAAAAATGTTTGGTTGATGATGTATGAATCGAAAGATTCTGAGTTAAATGATGTCTTTTGTTGTTAAGTTTTTGTGTTCACTAGATAACGATTTTATTTTTAGTATTTTTAGTAACAGGTGACCAAACTTTTAAAAAGAAAAAGAAAAGGCACTAACCTTTTGAGATTTTATTATTATTAAGCAAG

mRNA sequence

CTTTTTCTATTCACTCGCTTTATAAACGGAGACCCATTTCTCCAACTCTGCCGCGGACACGTTTTACAGAACGAGAGGCGAGTTTGAAAAACGAGAAAAAAATGGGAAGTGGTTTCTTTAGCGAATCTGAATTATGGGTTTCTTCTGTGAATGAAGTTCGAGAAGACCCAGACGAGGATTCCTCCATTGAAGAGGGTGAGGAAATCGGGTCGGATTCGGATTTGGACGAGTCGGTTCAAATGGGGATGGAAAATTTGACGAAGAAGATGAAGAAGAAGAAGAAGAAGAATCATGTTTTGCTTGAGGGGTTTGTGGAGGATGAGGATGAGTTGATGAGGACGAAGAGCTTGACGGATGAGGATCTGGATGAGCTTAAAGGGTGTGTGGATCTAGGGTTTGGTTTCAGTTACGATGAGATTCCGGAGCTCTGCAACACTCTGCCGGCGTTGGAGCTCTGTTATTCCATGAGCCAAAAGTACATGGACGAGCACCAGAAGTCGCCGGAGAGCTCGACGGCGTTGGATTCGTGTTCGTCAGTGTCGAGTCCGATTGCGAATTGGAAGATCTCCAGTCCTGGTGATCATCCAGAAGATGTTAAGGCAAGGCTCAAATTTTGGGCTCAGGCAGTGGCATGTACTGTTAGATTATGCAACTAAGAAGCATCATCACTAGATTTGGCAGAGAAAAAGGAATGCGTCTTTTGCACTAGTACCCTTTAGCCTTATGGTGAACCGACTTGACACGCGTCCGAGTAAAGATGGAACGAATGAACGACGGGTTGTATGATGAGTCTGACTTATGAAGATGAAGAAGAGGATGATGAATGTATCAGTGGGTTTGACTCTTTGAGAGGTTAGCTTCCATAACACCCAACCCAACACCCCAAGTCTCTTTCACTGACCTTTTTGCATATGCTGAGGTTTTGTCAATGGAAAGCAAGGGAGAATGTTGATTCTTTGTTATTCCAATGTCTGAGTAGGGAAGTTCTTGGTTTTTGATTTTGAGTTGTAGATGGTATAATCTCTTTTATGCTATTCAACGACTCCAAAATTGGATCGAGACCAGGGAACATGTCGTCCCTGCTTATGATTTCTAGTCTCCCTTCACGGCTTGAATGCCATAGAAGAAAAAATGTTTGGTTGATGATGTATGAATCGAAAGATTCTGAGTTAAATGATGTCTTTTGTTGTTAAGTTTTTGTGTTCACTAGATAACGATTTTATTTTTAGTATTTTTAGTAACAGGTGACCAAACTTTTAAAAAGAAAAAGAAAAGGCACTAACCTTTTGAGATTTTATTATTATTAAGCAAG

Coding sequence (CDS)

ATGGGAAGTGGTTTCTTTAGCGAATCTGAATTATGGGTTTCTTCTGTGAATGAAGTTCGAGAAGACCCAGACGAGGATTCCTCCATTGAAGAGGGTGAGGAAATCGGGTCGGATTCGGATTTGGACGAGTCGGTTCAAATGGGGATGGAAAATTTGACGAAGAAGATGAAGAAGAAGAAGAAGAAGAATCATGTTTTGCTTGAGGGGTTTGTGGAGGATGAGGATGAGTTGATGAGGACGAAGAGCTTGACGGATGAGGATCTGGATGAGCTTAAAGGGTGTGTGGATCTAGGGTTTGGTTTCAGTTACGATGAGATTCCGGAGCTCTGCAACACTCTGCCGGCGTTGGAGCTCTGTTATTCCATGAGCCAAAAGTACATGGACGAGCACCAGAAGTCGCCGGAGAGCTCGACGGCGTTGGATTCGTGTTCGTCAGTGTCGAGTCCGATTGCGAATTGGAAGATCTCCAGTCCTGGTGATCATCCAGAAGATGTTAAGGCAAGGCTCAAATTTTGGGCTCAGGCAGTGGCATGTACTGTTAGATTATGCAACTAA

Homology

[Close]

BLAST of CmoCh06G016580 vs. TrEMBL
Match: A0A0A0KXD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012530 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.5e-78
Identity = 152/188 (80.85%), Postives = 166/188 (88.30%), Query Frame = 1


Query: 1   MGSGFFSESELWVSSVNEVREDPDEDSSIEEGEEIGSDSDLDESVQMGMENLTKKMKKKK 60
           MGS FF+ES+ WVSSVN +REDPD+++SI+ GE IG+DSD DES QMG+     K +  K
Sbjct: 1   MGSDFFTESQTWVSSVNGIREDPDDETSIDGGEGIGTDSDFDESAQMGV-----KKRMMK 60

Query: 61  KKNHVLLEGFVEDEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCY 120
           K++ VLLEGFVEDED+LMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCY
Sbjct: 61  KRSQVLLEGFVEDEDDLMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCY 120

Query: 121 SMSQKYMDEHQKSPESSTA----LDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAV 180
           SMSQKYMD+HQKSPESS A     DSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAV
Sbjct: 121 SMSQKYMDDHQKSPESSPASAVPADSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAV 180

Query: 181 ACTVRLCN 185
           ACTVRLCN
Sbjct: 181 ACTVRLCN 183

[Close]

BLAST of CmoCh06G016580 vs. TrEMBL
Match: M5XT12_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011892mg PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 4.0e-60
Identity = 130/188 (69.15%), Postives = 151/188 (80.32%), Query Frame = 1


Query: 4   GFFSESELWVSSVNEVREDPDEDSSIEEGEEIGSDSDLDESVQMGMENLTK----KMKKK 63
           GF   +E WVSS+   R++PDE +     + + + S  +  + +G E   K    K KKK
Sbjct: 12  GFTCGTESWVSSI---RKNPDEQTH----QSLQTSSSSEFMLGIGEEEWPKLNSLKSKKK 71

Query: 64  KKKNHVLLEGFVE--DEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALE 123
           KKKN VLLEG+VE  DED+L RTKSLTDEDLDELKGC+DLGFGFSY+EIPELCNTLPALE
Sbjct: 72  KKKNQVLLEGYVESADEDDLSRTKSLTDEDLDELKGCLDLGFGFSYEEIPELCNTLPALE 131

Query: 124 LCYSMSQKYMDEHQKSPESS-TALDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAV 183
           LCYSMSQK+MDE+QKSPE+S T +DSC SVSSPIANWKISSPGDHPEDVKARLK+WAQAV
Sbjct: 132 LCYSMSQKFMDENQKSPENSPTTVDSCPSVSSPIANWKISSPGDHPEDVKARLKYWAQAV 191

Query: 184 ACTVRLCN 185
           ACTVRLC+
Sbjct: 192 ACTVRLCS 192

[Close]

BLAST of CmoCh06G016580 vs. TrEMBL
Match: A0A061ERL9_THECC (Signal transducer and transcription activator isoform 1 OS=Theobroma cacao GN=TCM_021559 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.1e-55
Identity = 123/195 (63.08%), Postives = 144/195 (73.85%), Query Frame = 1


Query: 4   GFFSESELWVSSVNEVREDPDEDSSIEEGE-----------EIGSDSDLDESVQMGMENL 63
           G  S++E WVS  N + +  +E+++    E           +I  D D D+S      N 
Sbjct: 3   GSSSQTESWVSIRNSIYQAQEEETTTAAAESFVDQERREWTKIDQDDDDDDS-----SNN 62

Query: 64  TKKMKKKKKKNHVLLEGFVE---DEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPEL 123
             K+ KKKKKN VLLEG+VE    ED+L RTKSLTDEDLDELKGC+DLGFGFSY+EIPEL
Sbjct: 63  EDKIGKKKKKNQVLLEGYVEALDKEDDLTRTKSLTDEDLDELKGCLDLGFGFSYEEIPEL 122

Query: 124 CNTLPALELCYSMSQKYMDEHQKSPESSTALDSCSSVSSPIANWKISSPGDHPEDVKARL 183
           CNTLPALELCYSMSQKY+DEHQKSP+ S    +  +VSSPIANWKISSPGDHPEDVKARL
Sbjct: 123 CNTLPALELCYSMSQKYLDEHQKSPDPSPD-TTAETVSSPIANWKISSPGDHPEDVKARL 182

Query: 184 KFWAQAVACTVRLCN 185
           KFWAQAVACTV+LC+
Sbjct: 183 KFWAQAVACTVKLCS 191

[Close]

BLAST of CmoCh06G016580 vs. TrEMBL
Match: V4VT44_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022453mg PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.5e-54
Identity = 125/185 (67.57%), Postives = 137/185 (74.05%), Query Frame = 1


Query: 5   FFSESELWVSSVNEVREDPDEDSSIEEGEEIGSDSDLDESVQMGMENLTKKMKKKKKKNH 64
           F  E+E WV S   + E+   D + E      + S  DE      E L K   KKKKKN 
Sbjct: 4   FSCETESWVDSSEAIMEEETHDLNQEPQFLTITRSGFDEEES---EELLKNENKKKKKNQ 63

Query: 65  VLLEGFVE--DEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSM 124
           VLLEG+VE   ED+L RTKSLTDEDLDELKGC+DLGFGFSYDEIPELCNTLPALELCYSM
Sbjct: 64  VLLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSM 123

Query: 125 SQKYMDEH--QKSPES-STALDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAVACT 184
           SQK+MDEH  QKSPES   +  S   VSSPIANWKISSPGDHPEDVKARLK+WAQAVACT
Sbjct: 124 SQKFMDEHQSQKSPESHGNSPVSTDPVSSPIANWKISSPGDHPEDVKARLKYWAQAVACT 183

[Close]

BLAST of CmoCh06G016580 vs. TrEMBL
Match: A0A067DKT5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029447mg PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.5e-54
Identity = 125/185 (67.57%), Postives = 137/185 (74.05%), Query Frame = 1


Query: 5   FFSESELWVSSVNEVREDPDEDSSIEEGEEIGSDSDLDESVQMGMENLTKKMKKKKKKNH 64
           F  E+E WV S   + E+   D + E      + S  DE      E L K   KKKKKN 
Sbjct: 4   FSCETESWVDSSEAIMEEETHDLNQEPQFLTITRSGFDEEES---EELLKNENKKKKKNQ 63

Query: 65  VLLEGFVE--DEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSM 124
           VLLEG+VE   ED+L RTKSLTDEDLDELKGC+DLGFGFSYDEIPELCNTLPALELCYSM
Sbjct: 64  VLLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSM 123

Query: 125 SQKYMDEH--QKSPES-STALDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAVACT 184
           SQK+MDEH  QKSPES   +  S   VSSPIANWKISSPGDHPEDVKARLK+WAQAVACT
Sbjct: 124 SQKFMDEHQSQKSPESHGNSPVSTDPVSSPIANWKISSPGDHPEDVKARLKYWAQAVACT 183

[Close]

BLAST of CmoCh06G016580 vs. TAIR10
Match: AT2G31560.1 (AT2G31560.1 Protein of unknown function (DUF1685))

HSP 1 Score: 188.0 bits (476), Expect = 5.3e-48
Identity = 91/134 (67.91%), Postives = 113/134 (84.33%), Query Frame = 1


Query: 55  KMKKKKKKNHVLLEGF-VEDEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTL 114
           + K +KKK+ VLLEG+ ++D+D+L R KSLTD+DL+ELKGC+DLGFGFSYDEIPELCNTL
Sbjct: 69  RKKLEKKKSQVLLEGYALDDQDDLTRAKSLTDDDLEELKGCLDLGFGFSYDEIPELCNTL 128

Query: 115 PALELCYSMSQKYMDEHQKSPESSTALDSCS---SVSSPIANWKISSPGDHPEDVKARLK 174
           PALELCYSMSQK++D+ Q++   S   D  S   + ++PIANWKISSPGD P+DVKARLK
Sbjct: 129 PALELCYSMSQKFLDDKQQNHHKSQEEDDSSPPPTTTAPIANWKISSPGDDPDDVKARLK 188

Query: 175 FWAQAVACTVRLCN 185
           +WAQ VACTVRLC+
Sbjct: 189 YWAQTVACTVRLCS 202

[Close]

BLAST of CmoCh06G016580 vs. TAIR10
Match: AT2G43340.1 (AT2G43340.1 Protein of unknown function (DUF1685))

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-46
Identity = 104/184 (56.52%), Postives = 125/184 (67.93%), Query Frame = 1


Query: 7   SESELWVSSVNEVREDPDEDSSIEEGEEIGSDSDLDESVQMGMENLTKKMKK-KKKKNHV 66
           S+SE+  SS +       E+  I  G               G+    K+ KK +KKK++V
Sbjct: 19  SDSEISTSSFSSCSYSESEEEEINNG--------------FGVVQSKKQTKKLEKKKSNV 78

Query: 67  LLEGFVED---EDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSM 126
           LLEG+V D    D+L RTKSLTD+DL+ELKGCVDLGFGF+Y+EIPELCNTLPALELCYSM
Sbjct: 79  LLEGYVVDSAVNDDLKRTKSLTDDDLEELKGCVDLGFGFNYEEIPELCNTLPALELCYSM 138

Query: 127 SQKYMDE---HQKSPESSTALDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAVACT 184
           SQK++D+   H  S           S  SPIA+WKISSPGD+P+DVKARLKFWAQAVACT
Sbjct: 139 SQKFIDQDHHHHSSSSPEKKSSVLDSPVSPIASWKISSPGDNPDDVKARLKFWAQAVACT 188

[Close]

BLAST of CmoCh06G016580 vs. TAIR10
Match: AT1G05870.1 (AT1G05870.1 Protein of unknown function (DUF1685))

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-46
Identity = 108/197 (54.82%), Postives = 136/197 (69.04%), Query Frame = 1


Query: 1   MGSGFFSESELWVSSVNEVREDPDEDSSIEEGEEIGSDSDLDESVQMGMENLTKKMKKKK 60
           MG      S+ W +S N   E  DE    E   EI S         +  E   KK+++KK
Sbjct: 1   MGCVRCKSSDPWQTSANAF-ESVDESGINEAWVEISSRRSF-----VAGEGSRKKLERKK 60

Query: 61  KKNHVLLEGFVE---------DEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCN 120
            +  VLLEG+VE          +D+L R+KSLTD+DL++L+GC+DLGFGFSYDEIPELCN
Sbjct: 61  SQ--VLLEGYVETASSSSVDDQKDDLTRSKSLTDDDLEDLRGCLDLGFGFSYDEIPELCN 120

Query: 121 TLPALELCYSMSQKYMDEHQ-KSPESSTALDSCSS---VSSPIANWKISSPGDHPEDVKA 180
           TLPALELCYSMSQK++D+ Q KSPE+S+  D  S     ++PIANWKISSPGD+P+DVKA
Sbjct: 121 TLPALELCYSMSQKFLDDKQNKSPETSSVEDCPSPPLVTATPIANWKISSPGDNPDDVKA 180

Query: 181 RLKFWAQAVACTVRLCN 185
           RLK+WAQAVACTV+LC+
Sbjct: 181 RLKYWAQAVACTVQLCS 189

[Close]

BLAST of CmoCh06G016580 vs. TAIR10
Match: AT3G22690.1 (AT3G22690.1 Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885))

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-22
Identity = 54/93 (58.06%), Postives = 64/93 (68.82%), Query Frame = 1


Query: 83  LTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQKYMDEHQKSPESSTALDS 142
           LTD+DL+ LKGC+DLGFGF+YDEIP LC TLPALELCYSMSQK +D+             
Sbjct: 843 LTDDDLEVLKGCLDLGFGFNYDEIPALCKTLPALELCYSMSQKNLDDKH----------- 902

Query: 143 CSSVSSPIANWKISSPGDHPEDVKARLKFWAQA 176
             S+  PI    + S  D+P+DVKARLK WAQA
Sbjct: 903 TPSLQLPIGRSLVPS-CDNPDDVKARLKCWAQA 923

[Close]

BLAST of CmoCh06G016580 vs. TAIR10
Match: AT3G04700.1 (AT3G04700.1 Protein of unknown function (DUF1685))

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-18
Identity = 51/114 (44.74%), Postives = 72/114 (63.16%), Query Frame = 1


Query: 75  DELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQKYMD-EHQKS 134
           D L    +LTDEDL+ELKG ++LGFGF+ +   +LCNTLPAL+L ++++++        S
Sbjct: 74  DNLCIQANLTDEDLNELKGSIELGFGFNEEAGQKLCNTLPALDLYFAVNRQLSPLPSPSS 133

Query: 135 PESSTALDSCSSVSSPIA-------NWKISSPGDHPEDVKARLKFWAQAVACTV 181
             SS+A  S  S S P +       + KI  PGD P+ +K RL+ WAQAVAC+V
Sbjct: 134 SRSSSASASTFSYSIPCSPKKTDSDSVKILCPGDDPQQMKQRLRHWAQAVACSV 187

[Close]

BLAST of CmoCh06G016580 vs. NCBI nr
Match: gi|659108062|ref|XP_008453998.1| (PREDICTED: uncharacterized protein LOC103494552 [Cucumis melo])

HSP 1 Score: 308.1 bits (788), Expect = 1.0e-80
Identity = 158/188 (84.04%), Postives = 167/188 (88.83%), Query Frame = 1


Query: 1   MGSGFFSESELWVSSVNEVREDPDEDSSIEEGEEIGSDSDLDESVQMGMENLTKKMKKKK 60
           MGS FFS+SE WVSSVN +REDPD+++S+EEGE IGSDSD DESVQMG     KK    K
Sbjct: 1   MGSDFFSQSETWVSSVNGIREDPDDETSLEEGEGIGSDSDFDESVQMG----AKKRMMMK 60

Query: 61  KKNHVLLEGFVEDEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCY 120
           K+N VLLEGFVEDED+LMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCY
Sbjct: 61  KRNQVLLEGFVEDEDDLMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCY 120

Query: 121 SMSQKYMDEHQKSPESSTA----LDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAV 180
           SMSQKYMD+HQKSPESS A     DSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAV
Sbjct: 121 SMSQKYMDDHQKSPESSPASAVPADSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAV 180

Query: 181 ACTVRLCN 185
           ACTVRLCN
Sbjct: 181 ACTVRLCN 184

[Close]

BLAST of CmoCh06G016580 vs. NCBI nr
Match: gi|449468798|ref|XP_004152108.1| (PREDICTED: uncharacterized protein LOC101213317 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 8.0e-78
Identity = 152/188 (80.85%), Postives = 166/188 (88.30%), Query Frame = 1


Query: 1   MGSGFFSESELWVSSVNEVREDPDEDSSIEEGEEIGSDSDLDESVQMGMENLTKKMKKKK 60
           MGS FF+ES+ WVSSVN +REDPD+++SI+ GE IG+DSD DES QMG+     K +  K
Sbjct: 1   MGSDFFTESQTWVSSVNGIREDPDDETSIDGGEGIGTDSDFDESAQMGV-----KKRMMK 60

Query: 61  KKNHVLLEGFVEDEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCY 120
           K++ VLLEGFVEDED+LMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCY
Sbjct: 61  KRSQVLLEGFVEDEDDLMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCY 120

Query: 121 SMSQKYMDEHQKSPESSTA----LDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAV 180
           SMSQKYMD+HQKSPESS A     DSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAV
Sbjct: 121 SMSQKYMDDHQKSPESSPASAVPADSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAV 180

Query: 181 ACTVRLCN 185
           ACTVRLCN
Sbjct: 181 ACTVRLCN 183

[Close]

BLAST of CmoCh06G016580 vs. NCBI nr
Match: gi|596192426|ref|XP_007223513.1| (hypothetical protein PRUPE_ppa011892mg [Prunus persica])

HSP 1 Score: 239.2 bits (609), Expect = 5.7e-60
Identity = 130/188 (69.15%), Postives = 151/188 (80.32%), Query Frame = 1


Query: 4   GFFSESELWVSSVNEVREDPDEDSSIEEGEEIGSDSDLDESVQMGMENLTK----KMKKK 63
           GF   +E WVSS+   R++PDE +     + + + S  +  + +G E   K    K KKK
Sbjct: 12  GFTCGTESWVSSI---RKNPDEQTH----QSLQTSSSSEFMLGIGEEEWPKLNSLKSKKK 71

Query: 64  KKKNHVLLEGFVE--DEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALE 123
           KKKN VLLEG+VE  DED+L RTKSLTDEDLDELKGC+DLGFGFSY+EIPELCNTLPALE
Sbjct: 72  KKKNQVLLEGYVESADEDDLSRTKSLTDEDLDELKGCLDLGFGFSYEEIPELCNTLPALE 131

Query: 124 LCYSMSQKYMDEHQKSPESS-TALDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAV 183
           LCYSMSQK+MDE+QKSPE+S T +DSC SVSSPIANWKISSPGDHPEDVKARLK+WAQAV
Sbjct: 132 LCYSMSQKFMDENQKSPENSPTTVDSCPSVSSPIANWKISSPGDHPEDVKARLKYWAQAV 191

Query: 184 ACTVRLCN 185
           ACTVRLC+
Sbjct: 192 ACTVRLCS 192

[Close]

BLAST of CmoCh06G016580 vs. NCBI nr
Match: gi|1009170882|ref|XP_015866437.1| (PREDICTED: uncharacterized protein LOC107404017 [Ziziphus jujuba])

HSP 1 Score: 235.3 bits (599), Expect = 8.3e-59
Identity = 126/181 (69.61%), Postives = 142/181 (78.45%), Query Frame = 1


Query: 8   ESELWVSSVNEVREDPDEDSSIEEGEEIGSDSDLDESVQMGMENLTKKMKKKKKKNHVLL 67
           ESE WV S +  +E+PDE +  ++       S + +  +     + K  KKKKKKN VLL
Sbjct: 7   ESESWVFSTSPYQENPDEKTLTDQSRTSSGSSLVSQEHEEDWPRM-KNEKKKKKKNQVLL 66

Query: 68  EGFVE--DEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQK 127
           E +VE  DED+L RTKSLTDEDLDELKGC+DLGFGFSYDEIPELCNTLPALELCYSMSQK
Sbjct: 67  EAYVEAADEDDLTRTKSLTDEDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQK 126

Query: 128 YMDEHQKSPESSTA--LDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAVACTVRLC 185
           + D+ QKSPESS A   DSCS VSSPIANWKISSPGDHPEDVKARLKFWAQAVACTVRLC
Sbjct: 127 FNDDQQKSPESSPAPTADSCSPVSSPIANWKISSPGDHPEDVKARLKFWAQAVACTVRLC 186

[Close]

BLAST of CmoCh06G016580 vs. NCBI nr
Match: gi|645231918|ref|XP_008222622.1| (PREDICTED: uncharacterized protein LOC103322479 [Prunus mume])

HSP 1 Score: 232.6 bits (592), Expect = 5.4e-58
Identity = 127/187 (67.91%), Postives = 148/187 (79.14%), Query Frame = 1


Query: 4   GFFSESELWVSSVNEVREDPDEDSSIEEGEEIGSDSDLDESVQMGMEN---LTKKMKKKK 63
           GF   +E WVSS+   R++PDE +     + + + S  +  + +G E    L     KKK
Sbjct: 3   GFNCGTESWVSSI---RKNPDEQTH----QSLQTSSSSEIMLGIGEEEWPKLKSLKSKKK 62

Query: 64  KKNHVLLEGFVE--DEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALEL 123
           KKN VLLEG+VE  DED+L RTKSLTDEDLDELKGC+DLGFGFSY+EIPELCNTLPALEL
Sbjct: 63  KKNQVLLEGYVESADEDDLSRTKSLTDEDLDELKGCLDLGFGFSYEEIPELCNTLPALEL 122

Query: 124 CYSMSQKYMDEHQKSPESS-TALDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAVA 183
           CYSMSQK+MDE+QK PE+S T +DSC SVSSPIANWKISSPGDHPEDVKARLK+WAQAVA
Sbjct: 123 CYSMSQKFMDENQKLPENSPTTVDSCPSVSSPIANWKISSPGDHPEDVKARLKYWAQAVA 182

Query: 184 CTVRLCN 185
           CTVRLC+
Sbjct: 183 CTVRLCS 182

The following BLAST results are available for this feature:

BLAST of CmoCh06G016580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G016580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXD6_CUCSA	5.5e-78	80.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012530 PE=4 SV=1	[more]
M5XT12_PRUPE	4.0e-60	69.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011892mg PE=4 SV=1	[more]
A0A061ERL9_THECC	5.1e-55	63.08	Signal transducer and transcription activator isoform 1 OS=Theobroma cacao GN=TC...	[more]
V4VT44_9ROSI	1.5e-54	67.57	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022453mg PE=4 SV=1	[more]
A0A067DKT5_CITSI	1.5e-54	67.57	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029447mg PE=4 SV=1	[more]

BLAST of CmoCh06G016580 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31560.1	5.3e-48	67.91	Protein of unknown function (DUF1685)	[more]
AT2G43340.1	1.0e-46	56.52	Protein of unknown function (DUF1685)	[more]
AT1G05870.1	2.2e-46	54.82	Protein of unknown function (DUF1685)	[more]
AT3G22690.1	1.7e-22	58.06	Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatrico...	[more]
AT3G04700.1	3.4e-18	44.74	Protein of unknown function (DUF1685)	[more]

BLAST of CmoCh06G016580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108062\|ref\|XP_008453998.1\|	1.0e-80	84.04	PREDICTED: uncharacterized protein LOC103494552 [Cucumis melo]	[more]
gi\|449468798\|ref\|XP_004152108.1\|	8.0e-78	80.85	PREDICTED: uncharacterized protein LOC101213317 [Cucumis sativus]	[more]
gi\|596192426\|ref\|XP_007223513.1\|	5.7e-60	69.15	hypothetical protein PRUPE_ppa011892mg [Prunus persica]	[more]
gi\|1009170882\|ref\|XP_015866437.1\|	8.3e-59	69.61	PREDICTED: uncharacterized protein LOC107404017 [Ziziphus jujuba]	[more]
gi\|645231918\|ref\|XP_008222622.1\|	5.4e-58	67.91	PREDICTED: uncharacterized protein LOC103322479 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012881	DUF1685

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006428	isoleucyl-tRNA aminoacylation
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0006450	regulation of translational fidelity
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0007010	cytoskeleton organization
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0002161	aminoacyl-tRNA editing activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004822	isoleucine-tRNA ligase activity
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G016580.1	CmoCh06G016580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012881	Protein of unknown function DUF1685	PFAM	PF07939	DUF1685	coord: 83..138 score: 3.6
None	No IPR available	PANTHER	PTHR31865	FAMILY NOT NAMED	coord: 72..184 score: 5.4
None	No IPR available	PANTHER	PTHR31865:SF0	SUBFAMILY NOT NAMED	coord: 72..184 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G016580	Cucsa.094970	Cucumber (Gy14) v1	cgycmoB0199
CmoCh06G016580	CmaCh14G014650	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G016580	CmaCh06G016640	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G016580	Cla010858	Watermelon (97103) v1	cmowmB788
CmoCh06G016580	Csa4G012530	Cucumber (Chinese Long) v2	cmocuB823
CmoCh06G016580	MELO3C017731	Melon (DHL92) v3.5.1	cmomeB761
CmoCh06G016580	ClCG07G015530	Watermelon (Charleston Gray)	cmowcgB749
CmoCh06G016580	CSPI04G03170	Wild cucumber (PI 183967)	cmocpiB833
CmoCh06G016580	Lsi07G000310	Bottle gourd (USVL1VR-Ls)	cmolsiB768
CmoCh06G016580	Cp4.1LG03g12710	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G016580	Cp4.1LG08g05930	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G016580	MELO3C017731.2	Melon (DHL92) v3.6.1	cmomedB865
CmoCh06G016580	CsaV3_4G003160	Cucumber (Chinese Long) v3	cmocucB0971
CmoCh06G016580	Cla97C07G142510	Watermelon (97103) v2	cmowmbB840
CmoCh06G016580	CsGy4G003060	Cucumber (Gy14) v2	cgybcmoB535
CmoCh06G016580	Carg15470	Silver-seed gourd	carcmoB0947
CmoCh06G016580	Carg06617	Silver-seed gourd	carcmoB0167

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G016580	CmoCh14G015020	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:

None