CmoCh06G012260 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G012260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ring finger protein, putative
Location	Cmo_Chr06 : 9301916 .. 9303031 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTGTGGGAAACTCAAATCAATGGCAGCCATATGCATACAGGGACTGTTCTTTAGAGATTTGCAGCATATATTGCCCTCAGTGGTGTTACATCATCTTCCCACCACCTCCACCTTTTGGCTATGGAGCCAATAGCGATTCTGGCACTGATTTCTCCCCTCTTATCATAGCCATCATTGGAATCTTGGCCAGCGCCTTCATTTTGGTAAGCTACTACACCATCATCTCCAAGTATTGCAGGAACAGAGCTACCACCTCCAACTCCAACATGGAAATGGATGATGAAGAAAATCTTTCTCAAATCCGCCATGAAAACCAGCTCCAAGCTCCTCCTCCTCCGGCAGGCCTGGATGAGGCTCTCATCAACTCCATCACAGTCTGCAAGTACAAAAGAGGAGATGGGTTAGTTGAAGGCACAGATTGCTCAGTTTGTTTGAGTGAGTTTGAAGAAAATGAGAGCTTAAGGCTTCTGCCAAAGTGCAGCCATGCCTTTCATCTTCCTTGTATTGACACATGGCTCAAATCTCACTCAACTTGCCCTCTCTGCCGCTCCAACATCTCACCCATCAATCTTTTCCCACCCCCAACTCAGGAAATTCAAAGAACAGAACATTTAAATTCATATAATTTTCAGTATCAGCACAGAAGCAATGACACAGTAGTTGTTGTGGTGGTTCAAGATTTGCCGGATTTAACAGTCAGCAGCCAAGAAACTGCTGTTTTGGGGCTTGAAAATGATGGTGTTTCTTCCAAGAATCAAAGGCAAAGTTTTGTATCAGATAATCAAGATTCAGAGCCGAGAGACATCATGATTCATCAAACAAGACAAGATGATGCTGTTCAGCCATTTAGAAGGTCAGTTTCCTTGAATTCTTTATCATGGCAAGGGCAGGTTTCTGTTGCTGATATACTGAGAGCCAGTCAAGATAGCGAGGAAGAGGTAGAAGAAGATGAATTACAAATGGGGATTGGATCTTCAAAAGCATTTGTTCAAGAGGATTGCCATTCCAGAGTTTCCAACTTGGAAATGCATAGATCTATCTCAACTGGGAAGCTGGGTTTTACAAATTATGGGAATTGGAAAGGGAAGAGTTGCATCATTCCCGATTGA

mRNA sequence

ATGGGTTCTGTGGGAAACTCAAATCAATGGCAGCCATATGCATACAGGGACTGTTCTTTAGAGATTTGCAGCATATATTGCCCTCAGTGGTGTTACATCATCTTCCCACCACCTCCACCTTTTGGCTATGGAGCCAATAGCGATTCTGGCACTGATTTCTCCCCTCTTATCATAGCCATCATTGGAATCTTGGCCAGCGCCTTCATTTTGGTAAGCTACTACACCATCATCTCCAAGTATTGCAGGAACAGAGCTACCACCTCCAACTCCAACATGGAAATGGATGATGAAGAAAATCTTTCTCAAATCCGCCATGAAAACCAGCTCCAAGCTCCTCCTCCTCCGGCAGGCCTGGATGAGGCTCTCATCAACTCCATCACAGTCTGCAAGTACAAAAGAGGAGATGGGTTAGTTGAAGGCACAGATTGCTCAGTTTGTTTGAGTGAGTTTGAAGAAAATGAGAGCTTAAGGCTTCTGCCAAAGTGCAGCCATGCCTTTCATCTTCCTTGTATTGACACATGGCTCAAATCTCACTCAACTTGCCCTCTCTGCCGCTCCAACATCTCACCCATCAATCTTTTCCCACCCCCAACTCAGGAAATTCAAAGAACAGAACATTTAAATTCATATAATTTTCAGTATCAGCACAGAAGCAATGACACAGTAGTTGTTGTGGTGGTTCAAGATTTGCCGGATTTAACAGTCAGCAGCCAAGAAACTGCTGTTTTGGGGCTTGAAAATGATGGTGTTTCTTCCAAGAATCAAAGGCAAAGTTTTGTATCAGATAATCAAGATTCAGAGCCGAGAGACATCATGATTCATCAAACAAGACAAGATGATGCTGTTCAGCCATTTAGAAGGTCAGTTTCCTTGAATTCTTTATCATGGCAAGGGCAGGTTTCTGTTGCTGATATACTGAGAGCCAGTCAAGATAGCGAGGAAGAGGTAGAAGAAGATGAATTACAAATGGGGATTGGATCTTCAAAAGCATTTGTTCAAGAGGATTGCCATTCCAGAGTTTCCAACTTGGAAATGCATAGATCTATCTCAACTGGGAAGCTGGGTTTTACAAATTATGGGAATTGGAAAGGGAAGAGTTGCATCATTCCCGATTGA

Coding sequence (CDS)

ATGGGTTCTGTGGGAAACTCAAATCAATGGCAGCCATATGCATACAGGGACTGTTCTTTAGAGATTTGCAGCATATATTGCCCTCAGTGGTGTTACATCATCTTCCCACCACCTCCACCTTTTGGCTATGGAGCCAATAGCGATTCTGGCACTGATTTCTCCCCTCTTATCATAGCCATCATTGGAATCTTGGCCAGCGCCTTCATTTTGGTAAGCTACTACACCATCATCTCCAAGTATTGCAGGAACAGAGCTACCACCTCCAACTCCAACATGGAAATGGATGATGAAGAAAATCTTTCTCAAATCCGCCATGAAAACCAGCTCCAAGCTCCTCCTCCTCCGGCAGGCCTGGATGAGGCTCTCATCAACTCCATCACAGTCTGCAAGTACAAAAGAGGAGATGGGTTAGTTGAAGGCACAGATTGCTCAGTTTGTTTGAGTGAGTTTGAAGAAAATGAGAGCTTAAGGCTTCTGCCAAAGTGCAGCCATGCCTTTCATCTTCCTTGTATTGACACATGGCTCAAATCTCACTCAACTTGCCCTCTCTGCCGCTCCAACATCTCACCCATCAATCTTTTCCCACCCCCAACTCAGGAAATTCAAAGAACAGAACATTTAAATTCATATAATTTTCAGTATCAGCACAGAAGCAATGACACAGTAGTTGTTGTGGTGGTTCAAGATTTGCCGGATTTAACAGTCAGCAGCCAAGAAACTGCTGTTTTGGGGCTTGAAAATGATGGTGTTTCTTCCAAGAATCAAAGGCAAAGTTTTGTATCAGATAATCAAGATTCAGAGCCGAGAGACATCATGATTCATCAAACAAGACAAGATGATGCTGTTCAGCCATTTAGAAGGTCAGTTTCCTTGAATTCTTTATCATGGCAAGGGCAGGTTTCTGTTGCTGATATACTGAGAGCCAGTCAAGATAGCGAGGAAGAGGTAGAAGAAGATGAATTACAAATGGGGATTGGATCTTCAAAAGCATTTGTTCAAGAGGATTGCCATTCCAGAGTTTCCAACTTGGAAATGCATAGATCTATCTCAACTGGGAAGCTGGGTTTTACAAATTATGGGAATTGGAAAGGGAAGAGTTGCATCATTCCCGATTGA

Homology

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BLAST of CmoCh06G012260 vs. Swiss-Prot
Match: ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2)

HSP 1 Score: 252.7 bits (644), Expect = 6.3e-66
Identity = 162/348 (46.55%), Postives = 202/348 (58.05%), Query Frame = 1


Query: 1   MGSVGNSNQWQPY--AYRDCSLEICSIYCPQWCYIIFPPPPPFGYGANSDSGT-DFSPLI 60
           MGS GN N W     +YRDCS  +CS+YCPQWCY+IFPPPP F      DS + DFSPL+
Sbjct: 1   MGSTGNPNPWGTTYDSYRDCSQGVCSVYCPQWCYVIFPPPPSFYLDDEDDSSSSDFSPLL 60

Query: 61  IAIIGILASAFILVSYYTIISKYCRNRATTSNSNM-------------EMDDEENLSQIR 120
           IA+IGILASAFILVSYYT+ISKYC  R   S+S               +  +  N +   
Sbjct: 61  IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGAT 120

Query: 121 HENQLQAPPPPAGLDEALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSH 180
           + NQ        GLDE+LI SITV KY++ DG VE +DCSVCLSEF+ENESLRLLPKC+H
Sbjct: 121 NPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNH 180

Query: 181 AFHLPCIDTWLKSHSTCPLCRSNI---SPINLFPPPTQEIQRTEHLNSYNFQYQHRSNDT 240
           AFH+PCIDTWLKSHS CPLCR+ I   S + +     Q+I  TE+ NS +      + D 
Sbjct: 181 AFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQQIV-TEN-NSIS------TGDD 240

Query: 241 VVVVVVQDLPDLTVSSQETAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQDDA 300
            VVVV  DL                      +N R    + N+ S P+   +  +R  + 
Sbjct: 241 SVVVVNLDL----------------------ENSRSRNETVNEGSTPKPPEMQDSRDGEE 300

Query: 301 VQPFRRSVSLNSLSWQGQVSVADILRASQDSEEEVEEDELQMGIGSSK 330
               RRS SLN  S  G VS+ADILR       E+E+DE   G+G+S+
Sbjct: 301 ----RRSASLN--SGGGVVSIADILR-------EIEDDEESAGVGTSR 305

[Close]

BLAST of CmoCh06G012260 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 3.1e-65
Identity = 162/378 (42.86%), Postives = 220/378 (58.20%), Query Frame = 1


Query: 6   NSNQWQPY-AYRDCSLEICSIYCPQWCYIIFPPPPP--FGYGANSDSGTDFSPLIIAIIG 65
           N N W PY +Y DCS  IC+IYCPQWCY+IFPPPPP  F    +S S + FSPL+IA+IG
Sbjct: 4   NPNPWSPYDSYNDCSQGICNIYCPQWCYLIFPPPPPSFFLDDDSSSSSSSFSPLLIALIG 63

Query: 66  ILASAFILVSYYTIISKYCRNRATTSNS---NMEMDDEENLSQIRHENQLQAPPPPAGLD 125
           IL SA ILVSYYT+ISKYC     TS+S   N+  + E   S  +     +      GL+
Sbjct: 64  ILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQ-----RISTNGDGLN 123

Query: 126 EALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHS 185
           E++I SITV KYK GDG V+G+DCSVCLSEFEENESLRLLPKC+HAFHLPCIDTWLKSHS
Sbjct: 124 ESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHS 183

Query: 186 TCPLCRSNISPINLFPPPTQEIQRTEHLNSYNFQYQHRSNDTVVVVVVQDLPDLTVSSQE 245
            CPLCR+ ++ +N    PT  + +   +   N         +V  + +      + +   
Sbjct: 184 NCPLCRAFVTGVN---NPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDF 243

Query: 246 TAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQDDAVQPFRRSVSLNSLSWQGQ 305
            +V+ +E+  + S+N      S+ Q  E R     +T+ +D++ P RRSVSLNS      
Sbjct: 244 DSVVVIEDLEIGSRNSDAR--SELQLPEER----RETKDEDSL-PIRRSVSLNS---GVV 303

Query: 306 VSVADILRASQDSEEE-----VEEDELQMGIGSSKAFVQEDCHSRVSNLE--MHRSISTG 365
           VS+AD+LR  +D E E       +   +   G  K     + + R   +     RS+STG
Sbjct: 304 VSIADVLREIEDEEGESGGVGTSQRREEGEDGDGKTIPPTEANQRSGGVSGFFVRSLSTG 361

Query: 366 KLGFTNYGNWKGKSCIIP 371
           +  F+ Y   +G++  +P
Sbjct: 364 RFIFSRYD--RGRNYRLP 361

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BLAST of CmoCh06G012260 vs. Swiss-Prot
Match: ATL41_ORYSJ (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 229.6 bits (584), Expect = 5.7e-59
Identity = 150/351 (42.74%), Postives = 186/351 (52.99%), Query Frame = 1


Query: 10  WQPYA-YRDCSLEICSIYCPQWCYIIFPPPPPF---GYGANSDSGTDFSPLIIAIIGILA 69
           W PY   RDCS  +CS+YCPQWCY IFPPPPPF   G  A+  SG  FSPL+IAIIG+LA
Sbjct: 8   WVPYEPTRDCSQGLCSMYCPQWCYFIFPPPPPFDVAGTSADDSSGPVFSPLVIAIIGVLA 67

Query: 70  SAFILVSYYTIISKYC------RNRATTSNSNMEMDDEENLSQIRH------ENQLQAPP 129
           SAF+LVSYYT ISKYC      R R   S+S          S  RH       ++     
Sbjct: 68  SAFLLVSYYTFISKYCGTVSSLRGRVFGSSSGGAAYGGGAGSGGRHGHGQSRSHESWNVS 127

Query: 130 PPAGLDEALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDT 189
           PP+GLDE LIN ITVCKY+RGDG V  TDCSVCL EF + ESLRLLP+CSHAFH  CIDT
Sbjct: 128 PPSGLDETLINKITVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDT 187

Query: 190 WLKSHSTCPLCRSNIS--PINLFPPPTQEIQRTEHLNSYNFQYQHRSNDTVVVVVVQDLP 249
           WLKSHS CPLCR+NI+   + L  P  +     E             N   VVVV+  L 
Sbjct: 188 WLKSHSNCPLCRANITFVTVGLASPEPEGCAPGE---------TGGDNTHEVVVVMDGLE 247

Query: 250 DLTVSSQE-TAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQDDAVQPFRRSVS 309
           +L    QE  +     +D   +K+  +     N  +E R          +   P +R  S
Sbjct: 248 NLCEEQQEAVSRASTADDDHDAKDVAEGMEEANGAAEIR----------EEGSPPKRGAS 307

Query: 310 LNSLSWQGQVSVADILRASQDSEEEVEEDELQMGIGSSKAFVQEDCHSRVS 342
              L    ++ +AD+L+ S + E     +    G+ +  A     CH   S
Sbjct: 308 SFDLHRDNRMCIADVLQESMEDELTAARES---GLLAGGAGTSRRCHGENS 336

[Close]

BLAST of CmoCh06G012260 vs. Swiss-Prot
Match: ATL53_ARATH (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 3.2e-41
Identity = 91/201 (45.27%), Postives = 117/201 (58.21%), Query Frame = 1


Query: 1   MGSVGNSNQWQPYAY-RDCSLEICSIYCPQWCYIIFPPPPPFGYGANSDSGT----DFSP 60
           M S  N + W  Y   RDC+  +CS +CPQWC  I   PPP  Y    + G     + SP
Sbjct: 1   MESDPNPSAWNQYINPRDCTQGLCSTFCPQWCTYINFSPPPISYEQFLNDGVASNPNLSP 60

Query: 61  LIIAIIGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPPP- 120
           L+IAI GI A+AF+L +YYT++SKYC N  TT+ +  E    + +  +    +     P 
Sbjct: 61  LVIAIFGIFATAFLLAAYYTLVSKYCAND-TTNEAASESGRSDIILDVNSPERGDQDDPF 120

Query: 121 -----PAGLDEALINSITVCKYKRGDG--LVEGTDCSVCLSEFEENESLRLLPKCSHAFH 180
                 AGLD+ LI  I   K K+      + GTDCS+CL EF E+ESLRLLPKC+H FH
Sbjct: 121 ALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFH 180

Query: 181 LPCIDTWLKSHSTCPLCRSNI 189
           + CID WLKSHS CPLCR+ I
Sbjct: 181 VVCIDRWLKSHSNCPLCRAKI 200

[Close]

BLAST of CmoCh06G012260 vs. Swiss-Prot
Match: ATL54_ARATH (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-34
Identity = 84/212 (39.62%), Postives = 117/212 (55.19%), Query Frame = 1


Query: 17  DCSLEICSIYCPQWCY------IIFPPPPPFG----------------YGANSDSGTDFS 76
           DCS  +C   CP  CY       I P  PP+                 Y  + DS +   
Sbjct: 22  DCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSPCPSPSISAVYLPSQDSSSSLD 81

Query: 77  PLII-----AIIGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQL 136
            + I     A++ IL + F LV+ +   S    N+ T  + N   +D + + +   +++ 
Sbjct: 82  AISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDN---EDNDTVMEEEFQDRE 141

Query: 137 QAPPP-----PAGLDEALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSH 196
           Q   P       GL +++INSIT+C YKRGDGL+E TDC VCL+EFEE+ESLRLLPKC+H
Sbjct: 142 QVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNH 201

[Close]

BLAST of CmoCh06G012260 vs. TrEMBL
Match: A0A0A0L405_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129520 PE=4 SV=1)

HSP 1 Score: 587.4 bits (1513), Expect = 1.2e-164
Identity = 306/383 (79.90%), Postives = 328/383 (85.64%), Query Frame = 1


Query: 1   MGSVGNSNQWQPYAYRDCSLEICSIYCPQWCYIIFPPPPPFGYGANSDSGTDFSPLIIAI 60
           MGSVGNSNQWQPYAY+DCSLEICSIYCPQWCYIIFPPPPPFGYG+N DS TDFSPLIIAI
Sbjct: 1   MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSNGDSATDFSPLIIAI 60

Query: 61  IGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPP-PPAGLD 120
           IGILASAFILVSYYTIISKYCRNRA+TSN  MEM+DEEN+SQIRHENQLQAPP PP GLD
Sbjct: 61  IGILASAFILVSYYTIISKYCRNRASTSNDAMEMEDEENISQIRHENQLQAPPLPPPGLD 120

Query: 121 EALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHS 180
           EALI SITVCKYKRGDGLVEGTDCSVCLSEF+ENESLRLLPKCSHAFHLPCIDTWLKSHS
Sbjct: 121 EALIKSITVCKYKRGDGLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHS 180

Query: 181 TCPLCRSNISPINLFPPPTQEIQRTEHL--NSYNFQYQHRSNDTVVVVVVQDLPDLTVSS 240
           TCPLCRSNISP NLF  PTQEIQ T+H   +++ +Q+QHR+NDT+VVVVVQDL DLTV  
Sbjct: 181 TCPLCRSNISPTNLFSTPTQEIQTTQHFVSSAFQYQHQHRTNDTIVVVVVQDLDDLTVVR 240

Query: 241 QETAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQ------DDAVQPFRRSVSL 300
           QET    LEND  SSKNQR+   +++Q S  R+ M +Q RQ      D  V+PFRRSVSL
Sbjct: 241 QETVDSRLENDDASSKNQREGCAAESQISGARERM-NQVRQEYDVVVDGVVEPFRRSVSL 300

Query: 301 NSLSWQGQVSVADILRASQDSEEEVEEDEL-QMGIGSSKAFVQEDCHSR----VSNLEMH 360
           NSLSWQGQVSVADILR SQDSEEE EEDEL QMGIGSSK FVQE  HS     VSNL M+
Sbjct: 301 NSLSWQGQVSVADILRVSQDSEEEAEEDELQQMGIGSSKVFVQEQSHSNHRTGVSNLGMN 360

Query: 361 RSISTGKLGFTNYGNWKGKSCII 370
           RSISTGKLGFTNYG  KGKSCII
Sbjct: 361 RSISTGKLGFTNYG--KGKSCII 380

[Close]

BLAST of CmoCh06G012260 vs. TrEMBL
Match: B9I6S0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s07100g PE=4 SV=2)

HSP 1 Score: 321.6 bits (823), Expect = 1.2e-84
Identity = 199/380 (52.37%), Postives = 239/380 (62.89%), Query Frame = 1


Query: 1   MGSV-GNSNQWQPYA-YRDCSLEICSIYCPQWCYIIFPPPPPFGYGANSDSGTDFSPLII 60
           MGS  GN N W PY+ YRDCS  ICSIYCPQ CYIIFPPPPPF  G + DS TD SPLII
Sbjct: 1   MGSTTGNQNPWAPYSTYRDCSQGICSIYCPQRCYIIFPPPPPFTLG-DDDSNTDLSPLII 60

Query: 61  AIIGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPPPPAGL 120
           A+IGILASAFILV+YYT+ISKYCR R     +    D  EN  Q+  E     P    GL
Sbjct: 61  AVIGILASAFILVTYYTLISKYCRRRGQGDGAT---DLNENHDQMASEAWQGIPA--GGL 120

Query: 121 DEALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSH 180
           DEAL+ SITVCKYK+GDG VEGT+CSVCLSEF+ENESLRLLPKCSHAFHLPCIDTWLKSH
Sbjct: 121 DEALVKSITVCKYKKGDGFVEGTECSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSH 180

Query: 181 STCPLCRSNISPINLFP--------PPTQEIQRTEHLNSYNFQYQHRSNDTVVVVVVQDL 240
           ++CPLCR+NI+P N+ P        P  + + RT   N    QYQH +ND V+V+  QDL
Sbjct: 181 ASCPLCRANIAPANILPSEAPAVPEPVQENLPRT---NVSTLQYQHGTNDAVLVI--QDL 240

Query: 241 PDLTVSSQETAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQDDAVQPFRRSVS 300
              T   +    L + +D   +          NQD E       + +  D +QP RRSVS
Sbjct: 241 EGSTFRQEGVVSLVIGDDTPKTPV--------NQDLESSQTGT-ELQISDPIQPLRRSVS 300

Query: 301 LNSLSWQGQVSVADILRASQDSEEEVEEDELQMGIGSSKAFVQEDCHSRVSNLEMHRSIS 360
            +S S Q   S+ADILR S+D ++E  +D  + G G     V+       S   M RSIS
Sbjct: 301 -SSFS-QNHTSIADILRTSED-DDEGSDDYRKNGGGGILGLVR-------SPFGMKRSIS 348

Query: 361 TGKLGFTNYGNWKGKSCIIP 371
           TG+  FT+Y   KG+S +IP
Sbjct: 361 TGRFTFTSYE--KGRSSMIP 348

[Close]

BLAST of CmoCh06G012260 vs. TrEMBL
Match: A0A061F730_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_025688 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 3.6e-84
Identity = 197/393 (50.13%), Postives = 242/393 (61.58%), Query Frame = 1


Query: 3   SVGNSNQWQPY-AYRDCSLEICSIYCPQWCYIIFPPPPPFGYGANSD-SGTDFSPLIIAI 62
           S    N W PY  Y+DCS  +CSIYCPQWCY+IFPPPPPF    + D SGTDFSPLIIA+
Sbjct: 4   SASTPNPWTPYDTYKDCSQGLCSIYCPQWCYLIFPPPPPFSINDDDDNSGTDFSPLIIAV 63

Query: 63  IGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPPPPAGLDE 122
           IGILAS FILVSYYTIISKYCR R      +  +   E+  ++ H+    A     GLDE
Sbjct: 64  IGILASVFILVSYYTIISKYCRRRR---QDHTRLQLNESRDELNHDGWQAASE---GLDE 123

Query: 123 ALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHST 182
            LI SITVCKYK+GDGL+EGTDCSVCLSEF+E+ESLR+LPKC+HAFH+PCIDTWLKSHS+
Sbjct: 124 GLIKSITVCKYKKGDGLIEGTDCSVCLSEFQEDESLRVLPKCNHAFHVPCIDTWLKSHSS 183

Query: 183 CPLCRSNISPINLFP----------PPTQEIQRTEHLNSYNFQYQHRSNDTVVVVVVQDL 242
           CPLCR+NI+  N  P             QE  R     S  F+YQ R ND + V+     
Sbjct: 184 CPLCRANIASTNSLPNQVAAVAVAAATIQEAPRNVSTLS-AFEYQQR-NDAISVI----- 243

Query: 243 PDLTVSSQETAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQDDAVQPFRRSVS 302
            DL +  +E AV+ L    V S +     V D  +++    MI      + +QP RRSVS
Sbjct: 244 QDLEMGVREEAVITL----VVSDD-----VGDMGNAKESSSMIGIGEDGNGIQPLRRSVS 303

Query: 303 LNSLSWQGQV-SVADILRASQDSEEEVEEDELQ--MGIGSSKAFVQEDCHSRVSN----- 362
           ++S   QGQV SVADILR S++ E+   E   Q  +GIGSSK F  E C S   N     
Sbjct: 304 MSSSLCQGQVFSVADILRISEEDEDLQMEHHFQSSLGIGSSKQFDGEYCKSNCRNGVLNL 363

Query: 363 ----LEMHRSISTGKLGFTNYGNWKGKSCIIPD 372
               L M RSISTG+  F+ Y   K ++ I+P+
Sbjct: 364 VRSPLAMKRSISTGRFMFSRYE--KDRNSILPN 372

[Close]

BLAST of CmoCh06G012260 vs. TrEMBL
Match: V4TLB5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031956mg PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.2e-82
Identity = 195/377 (51.72%), Postives = 244/377 (64.72%), Query Frame = 1


Query: 3   SVGNS-NQWQPYA-YRDCSLEICSIYCPQWCYIIFPPPPPFGY-GANSDSGTDFSPLIIA 62
           SVGN+ N W PYA Y+DCS  ICSIYCPQ CY IFPPPPPF     + DSGTDFSPLIIA
Sbjct: 4   SVGNNQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIA 63

Query: 63  IIGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPPPPAGLD 122
           +IGILASAFILV+YYTIISKYC+ R+  +     ++  EN  Q+  ++Q        GLD
Sbjct: 64  VIGILASAFILVTYYTIISKYCKRRSDETG----LEFSENRDQMSADDQAWQLGNNVGLD 123

Query: 123 EALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHS 182
           EALI SITVCKYK+GDGLVEGTDCSVCLSEF+E+ESLRLLPKC+HAFHLPCIDTWLKSHS
Sbjct: 124 EALIKSITVCKYKKGDGLVEGTDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS 183

Query: 183 TCPLCRSNI--SPINLFPPPTQEIQRTEHLNSYNFQYQHRSNDTVVVVVVQDLPDLTVSS 242
           +CPLCR+ I   P      P +  +   +++++  QYQH +ND   V+V+ D+ D     
Sbjct: 184 SCPLCRATIISFPAAQASAPGEVSESDANVSAH--QYQH-TND-AAVLVIHDIED----- 243

Query: 243 QETAVLGLENDGVSSKNQRQSFVSDNQDSEP--RDIMIHQTRQDDAVQPFRRSVSLNSLS 302
                 G+ N+ V S       V+D     P  +D  I +   D    P RRSVSLNS S
Sbjct: 244 ------GVNNEAVVS-----IVVNDEAPKTPNVQDDSIIEVGVD--ALPIRRSVSLNSSS 303

Query: 303 WQGQVSVADILRASQDSEEEVE-EDELQMGIGSSKAFVQEDCHSRVSNLEMHRSISTGKL 362
            QG   VADIL  +++ +++ E + E    I SS++ V      R S+L + RSISTG+ 
Sbjct: 304 CQGPFLVADILSTNEEDDDDAEIQLESTEKINSSRSKVMN--LVRNSSLGLKRSISTGRF 352

Query: 363 GFTNYGNWKGKSCIIPD 372
            FT YG+  G S IIP+
Sbjct: 364 KFTRYGSKDGNSVIIPN 352

[Close]

BLAST of CmoCh06G012260 vs. TrEMBL
Match: M5X0D2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007682mg PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 4.4e-82
Identity = 196/392 (50.00%), Postives = 237/392 (60.46%), Query Frame = 1


Query: 1   MGSVGNSNQWQPYA-YRDCSLEICSIYCPQWCYIIFPPPPPFGYGA---NSDSGTDFSPL 60
           MGS GN N W PY  Y+DCS  ICSIYCPQWCYI+ PPPPPF +     + DS TDFSPL
Sbjct: 1   MGSSGNQNPWAPYDNYKDCSQGICSIYCPQWCYILGPPPPPFDFAEADDSKDSATDFSPL 60

Query: 61  IIAIIGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPPPPA 120
           IIA+IGI ASAFILV+YYTIISKYCR R      +++M++  N +QI    Q        
Sbjct: 61  IIAVIGIFASAFILVTYYTIISKYCRRRDNDGGRDIDMENS-NPNQISESWQGST----T 120

Query: 121 GLDEALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLK 180
           GLDE+LI SI V KYKRGD LVEGTDCSVCLSEFEENESLRLLPKCSHAFH+PCIDTW K
Sbjct: 121 GLDESLIKSIKVHKYKRGDSLVEGTDCSVCLSEFEENESLRLLPKCSHAFHVPCIDTWFK 180

Query: 181 SHSTCPLCRSNISPINLFPPPTQEIQRTEHLNSYNFQYQHRSNDTVVVVVVQDLPDLTVS 240
           SHS+CPLCRSNI+   +   P QE   T        +YQHRS+ +  V+VVQDL +    
Sbjct: 181 SHSSCPLCRSNIAAPAIALNPQQEQNVTAS------EYQHRSHAS--VLVVQDLEE---- 240

Query: 241 SQETAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQDDAVQPFRRSVSLNSLSW 300
                V+ L ND V  K   Q  V +    E  + +     + D +Q  RRS SLN    
Sbjct: 241 -----VVSLANDHVVPKTTTQDIVRERAHLE--NTVNSCEIEQDGIQQLRRSASLNC--- 300

Query: 301 QGQVSVADILRA-----SQDSEEEVEEDELQMGIGSSKAFVQEDCHSRVSN--------- 360
              VS+AD+L        +D E ++E  +  MGIGSS   V E+ +S+  N         
Sbjct: 301 ---VSIADVLHLHDCEDDEDLENQMENVQFSMGIGSSNR-VAEEQNSKSDNHRSGVFSLV 359

Query: 361 ---LEMHRSISTGKLGFTNYGNWKGKSCIIPD 372
              L + RS STG+  FT YG  K K+ I P+
Sbjct: 361 KGPLVLKRSTSTGRFVFTRYG--KEKNSITPN 359

[Close]

BLAST of CmoCh06G012260 vs. TAIR10
Match: AT3G03550.1 (AT3G03550.1 RING/U-box superfamily protein)

HSP 1 Score: 252.7 bits (644), Expect = 3.6e-67
Identity = 162/348 (46.55%), Postives = 202/348 (58.05%), Query Frame = 1


Query: 1   MGSVGNSNQWQPY--AYRDCSLEICSIYCPQWCYIIFPPPPPFGYGANSDSGT-DFSPLI 60
           MGS GN N W     +YRDCS  +CS+YCPQWCY+IFPPPP F      DS + DFSPL+
Sbjct: 1   MGSTGNPNPWGTTYDSYRDCSQGVCSVYCPQWCYVIFPPPPSFYLDDEDDSSSSDFSPLL 60

Query: 61  IAIIGILASAFILVSYYTIISKYCRNRATTSNSNM-------------EMDDEENLSQIR 120
           IA+IGILASAFILVSYYT+ISKYC  R   S+S               +  +  N +   
Sbjct: 61  IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGAT 120

Query: 121 HENQLQAPPPPAGLDEALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSH 180
           + NQ        GLDE+LI SITV KY++ DG VE +DCSVCLSEF+ENESLRLLPKC+H
Sbjct: 121 NPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNH 180

Query: 181 AFHLPCIDTWLKSHSTCPLCRSNI---SPINLFPPPTQEIQRTEHLNSYNFQYQHRSNDT 240
           AFH+PCIDTWLKSHS CPLCR+ I   S + +     Q+I  TE+ NS +      + D 
Sbjct: 181 AFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQQIV-TEN-NSIS------TGDD 240

Query: 241 VVVVVVQDLPDLTVSSQETAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQDDA 300
            VVVV  DL                      +N R    + N+ S P+   +  +R  + 
Sbjct: 241 SVVVVNLDL----------------------ENSRSRNETVNEGSTPKPPEMQDSRDGEE 300

Query: 301 VQPFRRSVSLNSLSWQGQVSVADILRASQDSEEEVEEDELQMGIGSSK 330
               RRS SLN  S  G VS+ADILR       E+E+DE   G+G+S+
Sbjct: 301 ----RRSASLN--SGGGVVSIADILR-------EIEDDEESAGVGTSR 305

[Close]

BLAST of CmoCh06G012260 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 250.4 bits (638), Expect = 1.8e-66
Identity = 162/378 (42.86%), Postives = 220/378 (58.20%), Query Frame = 1


Query: 6   NSNQWQPY-AYRDCSLEICSIYCPQWCYIIFPPPPP--FGYGANSDSGTDFSPLIIAIIG 65
           N N W PY +Y DCS  IC+IYCPQWCY+IFPPPPP  F    +S S + FSPL+IA+IG
Sbjct: 4   NPNPWSPYDSYNDCSQGICNIYCPQWCYLIFPPPPPSFFLDDDSSSSSSSFSPLLIALIG 63

Query: 66  ILASAFILVSYYTIISKYCRNRATTSNS---NMEMDDEENLSQIRHENQLQAPPPPAGLD 125
           IL SA ILVSYYT+ISKYC     TS+S   N+  + E   S  +     +      GL+
Sbjct: 64  ILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQ-----RISTNGDGLN 123

Query: 126 EALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHS 185
           E++I SITV KYK GDG V+G+DCSVCLSEFEENESLRLLPKC+HAFHLPCIDTWLKSHS
Sbjct: 124 ESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHS 183

Query: 186 TCPLCRSNISPINLFPPPTQEIQRTEHLNSYNFQYQHRSNDTVVVVVVQDLPDLTVSSQE 245
            CPLCR+ ++ +N    PT  + +   +   N         +V  + +      + +   
Sbjct: 184 NCPLCRAFVTGVN---NPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDF 243

Query: 246 TAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQDDAVQPFRRSVSLNSLSWQGQ 305
            +V+ +E+  + S+N      S+ Q  E R     +T+ +D++ P RRSVSLNS      
Sbjct: 244 DSVVVIEDLEIGSRNSDAR--SELQLPEER----RETKDEDSL-PIRRSVSLNS---GVV 303

Query: 306 VSVADILRASQDSEEE-----VEEDELQMGIGSSKAFVQEDCHSRVSNLE--MHRSISTG 365
           VS+AD+LR  +D E E       +   +   G  K     + + R   +     RS+STG
Sbjct: 304 VSIADVLREIEDEEGESGGVGTSQRREEGEDGDGKTIPPTEANQRSGGVSGFFVRSLSTG 361

Query: 366 KLGFTNYGNWKGKSCIIP 371
           +  F+ Y   +G++  +P
Sbjct: 364 RFIFSRYD--RGRNYRLP 361

[Close]

BLAST of CmoCh06G012260 vs. TAIR10
Match: AT4G17905.1 (AT4G17905.1 RING/U-box superfamily protein)

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-42
Identity = 91/201 (45.27%), Postives = 117/201 (58.21%), Query Frame = 1


Query: 1   MGSVGNSNQWQPYAY-RDCSLEICSIYCPQWCYIIFPPPPPFGYGANSDSGT----DFSP 60
           M S  N + W  Y   RDC+  +CS +CPQWC  I   PPP  Y    + G     + SP
Sbjct: 1   MESDPNPSAWNQYINPRDCTQGLCSTFCPQWCTYINFSPPPISYEQFLNDGVASNPNLSP 60

Query: 61  LIIAIIGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPPP- 120
           L+IAI GI A+AF+L +YYT++SKYC N  TT+ +  E    + +  +    +     P 
Sbjct: 61  LVIAIFGIFATAFLLAAYYTLVSKYCAND-TTNEAASESGRSDIILDVNSPERGDQDDPF 120

Query: 121 -----PAGLDEALINSITVCKYKRGDG--LVEGTDCSVCLSEFEENESLRLLPKCSHAFH 180
                 AGLD+ LI  I   K K+      + GTDCS+CL EF E+ESLRLLPKC+H FH
Sbjct: 121 ALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFH 180

Query: 181 LPCIDTWLKSHSTCPLCRSNI 189
           + CID WLKSHS CPLCR+ I
Sbjct: 181 VVCIDRWLKSHSNCPLCRAKI 200

[Close]

BLAST of CmoCh06G012260 vs. TAIR10
Match: AT1G72220.1 (AT1G72220.1 RING/U-box superfamily protein)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-35
Identity = 84/212 (39.62%), Postives = 117/212 (55.19%), Query Frame = 1


Query: 17  DCSLEICSIYCPQWCY------IIFPPPPPFG----------------YGANSDSGTDFS 76
           DCS  +C   CP  CY       I P  PP+                 Y  + DS +   
Sbjct: 22  DCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSPCPSPSISAVYLPSQDSSSSLD 81

Query: 77  PLII-----AIIGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQL 136
            + I     A++ IL + F LV+ +   S    N+ T  + N   +D + + +   +++ 
Sbjct: 82  AISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDN---EDNDTVMEEEFQDRE 141

Query: 137 QAPPP-----PAGLDEALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSH 196
           Q   P       GL +++INSIT+C YKRGDGL+E TDC VCL+EFEE+ESLRLLPKC+H
Sbjct: 142 QVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNH 201

[Close]

BLAST of CmoCh06G012260 vs. TAIR10
Match: AT5G10380.1 (AT5G10380.1 RING/U-box superfamily protein)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-31
Identity = 79/186 (42.47%), Postives = 110/186 (59.14%), Query Frame = 1


Query: 29  QWCYIIFPPPPPFGYGANSDSGTDFSPLIIAIIG-ILASAFILVSYYTIISKYCRNRA-- 88
           ++C+  +PPPPP        S     P  I ++G I+   F++   Y  I++  R  A  
Sbjct: 19  RFCFRQYPPPPPPPPPPRELSL--LLPTSICVVGSIILFLFLVFFLYLHITQQRRISAAS 78

Query: 89  -TTSNSNMEMDDEE----NLSQIRHENQLQAPPPPAGLDEALINSITVCKYKRGDGLVEG 148
            T  ++N + D++E    + S   H  Q+    P  GL  + INSITV  +K+G+G+++G
Sbjct: 79  VTPGDTNQQEDEDETEERDFSDFHHVWQI----PTVGLHRSAINSITVVGFKKGEGIIDG 138

Query: 149 TDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHSTCPLCRSNISPINLFPPPTQE 207
           T+CSVCL+EFEE+ESLRLLPKCSHAFHL CIDTWL SH  CPLCR   +P+ L   P  +
Sbjct: 139 TECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCR---APVLLITEPPHQ 195

[Close]

BLAST of CmoCh06G012260 vs. NCBI nr
Match: gi|659075731|ref|XP_008438300.1| (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo])

HSP 1 Score: 592.4 bits (1526), Expect = 5.4e-166
Identity = 311/383 (81.20%), Postives = 331/383 (86.42%), Query Frame = 1


Query: 1   MGSVGNSNQWQPYAYRDCSLEICSIYCPQWCYIIFPPPPPFGYGANSDSGTDFSPLIIAI 60
           MGSVGNSNQWQPYAY+DCSLEICSIYCPQWCYIIFPPPPPFGYG+N DS TDFSPLIIAI
Sbjct: 1   MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSNGDSATDFSPLIIAI 60

Query: 61  IGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPP-PPAGLD 120
           IGILASAFILVSYYTIISKYCRNRA+TSN  MEM+DEENLSQIRHENQLQAPP PP GLD
Sbjct: 61  IGILASAFILVSYYTIISKYCRNRASTSNDAMEMEDEENLSQIRHENQLQAPPLPPPGLD 120

Query: 121 EALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHS 180
           EALI SITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHS
Sbjct: 121 EALIKSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHS 180

Query: 181 TCPLCRSNISPINLFPPPTQEIQRTEHL--NSYNFQYQHRSNDTVVVVVVQDLPDLTVSS 240
           TCPLCRSNISP NLF   TQEIQ T+H   +++ +Q+QHR+NDTV+VVVVQDL DLTV  
Sbjct: 181 TCPLCRSNISPTNLFSTATQEIQ-TQHFVSSAFQYQHQHRTNDTVLVVVVQDLDDLTVVR 240

Query: 241 QETAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQ-----DDAVQPFRRSVSLN 300
           QET V  LEND  SSKNQR+ + S++Q+S  R+ M +Q RQ     D  VQPFRRSVSLN
Sbjct: 241 QETVVSRLENDDASSKNQREGYASESQNSGERERM-NQVRQEYDVVDGVVQPFRRSVSLN 300

Query: 301 SLSWQGQVSVADILRASQDSEEEVEEDEL-QMGIGSSKAFVQEDCHSR----VSNLEMHR 360
           SLSWQG VSVADILR SQDSEEEVEEDEL QMGIGSSK FVQE  HS     VSNL M+R
Sbjct: 301 SLSWQGPVSVADILRVSQDSEEEVEEDELQQMGIGSSKVFVQEQSHSNHRTGVSNLGMNR 360

Query: 361 SISTGKLGFTNYGNWKGKSCIIP 371
           SISTGKLGFTNYG  KGKSCIIP
Sbjct: 361 SISTGKLGFTNYG--KGKSCIIP 379

[Close]

BLAST of CmoCh06G012260 vs. NCBI nr
Match: gi|449433165|ref|XP_004134368.1| (PREDICTED: RING-H2 finger protein ATL51-like [Cucumis sativus])

HSP 1 Score: 587.4 bits (1513), Expect = 1.7e-164
Identity = 306/383 (79.90%), Postives = 328/383 (85.64%), Query Frame = 1


Query: 1   MGSVGNSNQWQPYAYRDCSLEICSIYCPQWCYIIFPPPPPFGYGANSDSGTDFSPLIIAI 60
           MGSVGNSNQWQPYAY+DCSLEICSIYCPQWCYIIFPPPPPFGYG+N DS TDFSPLIIAI
Sbjct: 1   MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSNGDSATDFSPLIIAI 60

Query: 61  IGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPP-PPAGLD 120
           IGILASAFILVSYYTIISKYCRNRA+TSN  MEM+DEEN+SQIRHENQLQAPP PP GLD
Sbjct: 61  IGILASAFILVSYYTIISKYCRNRASTSNDAMEMEDEENISQIRHENQLQAPPLPPPGLD 120

Query: 121 EALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHS 180
           EALI SITVCKYKRGDGLVEGTDCSVCLSEF+ENESLRLLPKCSHAFHLPCIDTWLKSHS
Sbjct: 121 EALIKSITVCKYKRGDGLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHS 180

Query: 181 TCPLCRSNISPINLFPPPTQEIQRTEHL--NSYNFQYQHRSNDTVVVVVVQDLPDLTVSS 240
           TCPLCRSNISP NLF  PTQEIQ T+H   +++ +Q+QHR+NDT+VVVVVQDL DLTV  
Sbjct: 181 TCPLCRSNISPTNLFSTPTQEIQTTQHFVSSAFQYQHQHRTNDTIVVVVVQDLDDLTVVR 240

Query: 241 QETAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQ------DDAVQPFRRSVSL 300
           QET    LEND  SSKNQR+   +++Q S  R+ M +Q RQ      D  V+PFRRSVSL
Sbjct: 241 QETVDSRLENDDASSKNQREGCAAESQISGARERM-NQVRQEYDVVVDGVVEPFRRSVSL 300

Query: 301 NSLSWQGQVSVADILRASQDSEEEVEEDEL-QMGIGSSKAFVQEDCHSR----VSNLEMH 360
           NSLSWQGQVSVADILR SQDSEEE EEDEL QMGIGSSK FVQE  HS     VSNL M+
Sbjct: 301 NSLSWQGQVSVADILRVSQDSEEEAEEDELQQMGIGSSKVFVQEQSHSNHRTGVSNLGMN 360

Query: 361 RSISTGKLGFTNYGNWKGKSCII 370
           RSISTGKLGFTNYG  KGKSCII
Sbjct: 361 RSISTGKLGFTNYG--KGKSCII 380

[Close]

BLAST of CmoCh06G012260 vs. NCBI nr
Match: gi|1009110351|ref|XP_015895129.1| (PREDICTED: RING-H2 finger protein ATL52-like [Ziziphus jujuba])

HSP 1 Score: 344.4 bits (882), Expect = 2.6e-91
Identity = 202/393 (51.40%), Postives = 254/393 (64.63%), Query Frame = 1


Query: 1   MGSVGNSNQWQPY-AYRDCSLEICSIYCPQWCYIIFPPPPPFGYGANSD---SGTDFSPL 60
           MGS GNSN W PY  Y+DCS  +CSIYCP+WCYI+ PPPPPFG G + D   SGTDFSPL
Sbjct: 1   MGSAGNSNPWAPYETYKDCSQGVCSIYCPRWCYILVPPPPPFGLGQDEDDHDSGTDFSPL 60

Query: 61  IIAIIGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQ-LQAPPPP 120
           IIA+IGILASAFIL++YYTIISKYCR R   SN    ++ +E  +Q+  E+    APP  
Sbjct: 61  IIAVIGILASAFILLTYYTIISKYCRRR---SNDRRGIEMDETTNQMNAESWGSSAPPAS 120

Query: 121 AGLDEALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWL 180
            GLDE+LI SI V KYK GD  VEGTDCSVCLSEFEENESLRLLPKC+HAFH+PCID WL
Sbjct: 121 GGLDESLIKSIKVYKYKIGDKFVEGTDCSVCLSEFEENESLRLLPKCNHAFHVPCIDAWL 180

Query: 181 KSHSTCPLCRSNI-SPINLFPPPTQEIQRTEHLNSYNFQYQHRSNDTVVVVVVQDLPDLT 240
           KS+S+CPLCRSNI +   +      E Q+ + LN+   +YQHRSN+TV+VVV     DL 
Sbjct: 181 KSNSSCPLCRSNIVNTAQVQAGSGPESQQQQELNTSAMEYQHRSNETVLVVV----QDLE 240

Query: 241 VSSQETAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQDDAVQPFRRSVSLNSL 300
           + S+E  V+    +   +  +R+ ++  N                  ++P RRS SLNS 
Sbjct: 241 MGSEE-EVISFPGEVPKTPTERR-YLEGN------------------LRPLRRSFSLNSS 300

Query: 301 SWQGQVSVADILRASQDSEE---EVEEDELQMGIGSSKAFVQEDCHSRV----------- 360
             QG VSVADIL AS++ E+   ++E  +  MGIG SK  V ++ H +            
Sbjct: 301 FCQGPVSVADILHASEEDEDLLIQMENLQSSMGIGCSKGGVDQEQHCKSHDRNGVPNNLV 360

Query: 361 --SNLEMHRSISTGKLGFTNYGNWKGKSCIIPD 372
             S LEM RSISTG+  FT YG  KGK+ ++P+
Sbjct: 361 IRSPLEMKRSISTGRFVFTRYG--KGKNSVLPN 364

[Close]

BLAST of CmoCh06G012260 vs. NCBI nr
Match: gi|802585195|ref|XP_012070295.1| (PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas])

HSP 1 Score: 339.3 bits (869), Expect = 8.2e-90
Identity = 202/366 (55.19%), Postives = 233/366 (63.66%), Query Frame = 1


Query: 1   MGSVGNSNQWQPY--AYRDCSLEICSIYCPQWCYIIFPPPPPFGYGANSDSGTDFSPLII 60
           MGSVGN N W PY  AYRDCS  ICSIYCPQWCYIIFPPPPPF  G + DSGTDFSPLII
Sbjct: 1   MGSVGNQNPWSPYDTAYRDCSQGICSIYCPQWCYIIFPPPPPFTLG-DDDSGTDFSPLII 60

Query: 61  AIIGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPPPPAGL 120
           A+IGILASAFILVSYYTIISKYCR R +   + ME+D   N  QI  E          GL
Sbjct: 61  AVIGILASAFILVSYYTIISKYCRRRGSHPENTMELDG--NRDQISSEAWQSIN---GGL 120

Query: 121 DEALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSH 180
           DE++I SITVCKYK+GDG V+G+DCSVCLSEF+ENE LRLLPKCSHAFHLPCIDTWLKSH
Sbjct: 121 DESIIKSITVCKYKKGDGFVDGSDCSVCLSEFQENEDLRLLPKCSHAFHLPCIDTWLKSH 180

Query: 181 STCPLCRSNISPINLFPPP-TQEI--QRTEHLNSYNFQYQHRSNDTVVVVVVQDLPDLTV 240
           ++CPLCR+NI+  N  PPP TQE     T    +   +YQH  ND   V+V+QD  +  V
Sbjct: 181 ASCPLCRANIASTNFLPPPETQEAPPPPTSTTTTAAHEYQHIVND--AVLVIQDCEEPLV 240

Query: 241 SSQETAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQDDAVQPFRRSVSLNSLS 300
           S    +  G    G   K   Q    + Q+ E  +I+  + R D  +QP RRSVSLNS  
Sbjct: 241 SLVNVSRGG--GGGDMPKPAIQDLELNRQNMENENIL--EIRDDPIIQPIRRSVSLNSSL 300

Query: 301 WQGQVSVADILRASQDSEEE--VEEDELQMGIGSSKAFVQEDCHSRVSNLEMHRSISTGK 360
              QVS+ADIL  S D EE+  + E E    IG              S   M RS STG+
Sbjct: 301 CHNQVSIADILCISDDEEEDDGIRETENNNRIGIFNMV--------RSPPAMRRSFSTGR 346

[Close]

BLAST of CmoCh06G012260 vs. NCBI nr
Match: gi|566199926|ref|XP_002319229.2| (hypothetical protein POPTR_0013s07100g [Populus trichocarpa])

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 199/380 (52.37%), Postives = 239/380 (62.89%), Query Frame = 1


Query: 1   MGSV-GNSNQWQPYA-YRDCSLEICSIYCPQWCYIIFPPPPPFGYGANSDSGTDFSPLII 60
           MGS  GN N W PY+ YRDCS  ICSIYCPQ CYIIFPPPPPF  G + DS TD SPLII
Sbjct: 1   MGSTTGNQNPWAPYSTYRDCSQGICSIYCPQRCYIIFPPPPPFTLG-DDDSNTDLSPLII 60

Query: 61  AIIGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPPPPAGL 120
           A+IGILASAFILV+YYT+ISKYCR R     +    D  EN  Q+  E     P    GL
Sbjct: 61  AVIGILASAFILVTYYTLISKYCRRRGQGDGAT---DLNENHDQMASEAWQGIPA--GGL 120

Query: 121 DEALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSH 180
           DEAL+ SITVCKYK+GDG VEGT+CSVCLSEF+ENESLRLLPKCSHAFHLPCIDTWLKSH
Sbjct: 121 DEALVKSITVCKYKKGDGFVEGTECSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSH 180

Query: 181 STCPLCRSNISPINLFP--------PPTQEIQRTEHLNSYNFQYQHRSNDTVVVVVVQDL 240
           ++CPLCR+NI+P N+ P        P  + + RT   N    QYQH +ND V+V+  QDL
Sbjct: 181 ASCPLCRANIAPANILPSEAPAVPEPVQENLPRT---NVSTLQYQHGTNDAVLVI--QDL 240

Query: 241 PDLTVSSQETAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQDDAVQPFRRSVS 300
              T   +    L + +D   +          NQD E       + +  D +QP RRSVS
Sbjct: 241 EGSTFRQEGVVSLVIGDDTPKTPV--------NQDLESSQTGT-ELQISDPIQPLRRSVS 300

Query: 301 LNSLSWQGQVSVADILRASQDSEEEVEEDELQMGIGSSKAFVQEDCHSRVSNLEMHRSIS 360
            +S S Q   S+ADILR S+D ++E  +D  + G G     V+       S   M RSIS
Sbjct: 301 -SSFS-QNHTSIADILRTSED-DDEGSDDYRKNGGGGILGLVR-------SPFGMKRSIS 348

Query: 361 TGKLGFTNYGNWKGKSCIIP 371
           TG+  FT+Y   KG+S +IP
Sbjct: 361 TGRFTFTSYE--KGRSSMIP 348

The following BLAST results are available for this feature:

BLAST of CmoCh06G012260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL51_ARATH	6.3e-66	46.55	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2	[more]
ATL52_ARATH	3.1e-65	42.86	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1	[more]
ATL41_ORYSJ	5.7e-59	42.74	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04...	[more]
ATL53_ARATH	3.2e-41	45.27	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2	[more]
ATL54_ARATH	2.9e-34	39.62	RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2	[more]

BLAST of CmoCh06G012260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L405_CUCSA	1.2e-164	79.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129520 PE=4 SV=1	[more]
B9I6S0_POPTR	1.2e-84	52.37	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s07100g PE=4 SV=2	[more]
A0A061F730_THECC	3.6e-84	50.13	RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_025688 PE=4 S...	[more]
V4TLB5_9ROSI	1.2e-82	51.72	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031956mg PE=4 SV=1	[more]
M5X0D2_PRUPE	4.4e-82	50.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007682mg PE=4 SV=1	[more]

BLAST of CmoCh06G012260 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03550.1	3.6e-67	46.55	RING/U-box superfamily protein	[more]
AT5G17600.1	1.8e-66	42.86	RING/U-box superfamily protein	[more]
AT4G17905.1	1.8e-42	45.27	RING/U-box superfamily protein	[more]
AT1G72220.1	1.6e-35	39.62	RING/U-box superfamily protein	[more]
AT5G10380.1	1.1e-31	42.47	RING/U-box superfamily protein	[more]

BLAST of CmoCh06G012260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075731\|ref\|XP_008438300.1\|	5.4e-166	81.20	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo]	[more]
gi\|449433165\|ref\|XP_004134368.1\|	1.7e-164	79.90	PREDICTED: RING-H2 finger protein ATL51-like [Cucumis sativus]	[more]
gi\|1009110351\|ref\|XP_015895129.1\|	2.6e-91	51.40	PREDICTED: RING-H2 finger protein ATL52-like [Ziziphus jujuba]	[more]
gi\|802585195\|ref\|XP_012070295.1\|	8.2e-90	55.19	PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]	[more]
gi\|566199926\|ref\|XP_002319229.2\|	1.8e-84	52.37	hypothetical protein POPTR_0013s07100g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G012260.1	CmoCh06G012260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 142..185 score: 3.1
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 143..184 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 143..185 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 140..188 score: 7.6
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 1..210 score: 1.1E
None	No IPR available	PANTHER	PTHR14155:SF159	SUBFAMILY NOT NAMED	coord: 1..210 score: 1.1E
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 137..192 score: 3.79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G012260	Cucsa.256790	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G012260	Cucsa.265900	Cucumber (Gy14) v1	cgycmoB0735
CmoCh06G012260	CmaCh14G019240	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G012260	CmaCh17G000710	Cucurbita maxima (Rimu)	cmacmoB362
CmoCh06G012260	CmaCh06G011870	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G012260	Cla021386	Watermelon (97103) v1	cmowmB793
CmoCh06G012260	Csa3G129520	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G012260	MELO3C006278	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G012260	CSPI03G10430	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G012260	CSPI02G08640	Wild cucumber (PI 183967)	cmocpiB813
CmoCh06G012260	Lsi09G011000	Bottle gourd (USVL1VR-Ls)	cmolsiB733
CmoCh06G012260	Lsi05G018790	Bottle gourd (USVL1VR-Ls)	cmolsiB757
CmoCh06G012260	Cp4.1LG12g00520	Cucurbita pepo (Zucchini)	cmocpeB765
CmoCh06G012260	Cp4.1LG03g17760	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G012260	Cp4.1LG08g02420	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G012260	MELO3C006278.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G012260	CsaV3_3G010590	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G012260	CsGy3G010540	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G012260	CsGy2G008900	Cucumber (Gy14) v2	cgybcmoB248
CmoCh06G012260	Carg14898	Silver-seed gourd	carcmoB0852
CmoCh06G012260	Carg06317	Silver-seed gourd	carcmoB1288

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G012260	CmoCh14G019780	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh06G012260	CmoCh17G000760	Cucurbita moschata (Rifu)	cmocmoB308

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G012260	Silver-seed gourd	carcmoB0322
CmoCh06G012260	Silver-seed gourd	carcmoB1451
CmoCh06G012260	Watermelon (97103) v2	cmowmbB833
CmoCh06G012260	Watermelon (97103) v2	cmowmbB837
CmoCh06G012260	Wax gourd	cmowgoB1006
CmoCh06G012260	Cucurbita moschata (Rifu)	cmocmoB484
CmoCh06G012260	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G012260	Watermelon (Charleston Gray)	cmowcgB746
CmoCh06G012260	Cucurbita pepo (Zucchini)	cmocpeB777