CmoCh06G010810 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G010810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA-binding family protein
Location	Cmo_Chr06 : 8349756 .. 8353146 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATATATACGTAAAGGCCCACAGAGGATAGCGATAAACGTAGGTGAAAATTTTTGGAGATTTTTCATTTCTAATCATTTTTGCTCCGAATTCTGAGAACGATGGTTGCGGCGCCAGAAAATTCCGATTCCTCTCCTGCTTCAGTGCCGCCGCCGGCGTCAGTTGAGGATAAGGAGAAAGCCTTGGTTCCAGTGCCAGTCTCTAATAGTAATCTCTCTTTCTTCCTCTATGTTATCTGTTCGTTGTTGTGCTTTGATTGTTGCTTGTGATTGCGATGATATCGATTTGTTCATTTCTGTCTCATTTCTTACCTTGATTTATCTCGATATGAAGTGTTGGAGTGCTTGAATTATAGGCTTAGGCGAATTGTTGTGTGCTTTTTTCTTCATAGAGCGCGTACTGTGCATAGATTAGGAATTCAGGCCTTCGTCTTGTTATACTTTCACACTCTGTTTGATCGTCGAGAAATGGATCTAGTCGAAGAATAGAATCTGTACAAATTTGATTGGGAGTGATACCGATGCGTGGAAATTTGTTAGATCCAATTGAAATGATGAACTCCATATCACGATAATGAACTCTTTCTGATGTTAGTATTGCATTGTTGGAGAAAGTCAAATGTAAATCCATCGCCTTCATATCTGTCGAAGTTCTTTTAATTCTATTCGTATGGGAGAATATTTTCCTCTTCATTAACATGCGGAACGTTTCACTCTTCTTTTTCAAAGTTCAACAATGACGCGAAAACATCAATGTTTAGGGTTGCATTTGGTATTTATCCAATAAGTTAGGTTTGGATTGAATCGATATTTTTATCTTTCTTTTGTAGTTTAGTACCATTTTGGTCTTTTATTTCCTAAGTACTTCCTAATTCCCAATCCCTGCATAATACTATTCACGGAAAGTCTCGTTTCACTCTTTTCCCGGATTTCCAGAGATGAAGATAAATAAGTTTTTGTGCCTCTTGAATAATTTTTCCTCTCTTTGTTTTGTTATCAGTGACATATGCTGTACTGGGCCCATAGGCGTTTCTGATACTCTTTGGTTTTAGCTGCCACTTAATTTATTCTTCAATATGCTTAAAGTGACAAATTGAAGATTATGCTTTAGCTTTTTATTAATTGTTTCCTTTATAGGTGTAAAGGAAGACATTGTTAAAAAAAAAAGCTACAAATTGACATTATAGCTTTCTCTAATATGATTGTCTAGTAATTAGCAGTTGGGTAAGGTAGAATCAAGGCATTCGTCTTTATCGATACTTTTGAAGATGCTAATGCTAAATAATGCATCACAGCTGTCTAGCGTCGTCTTGAAGAATGATCTGTGTCCTTTCTGTCATTTGATTCTTCTTACTCAATAAAATTGGCCAAGAATTTTAATTAAACTTGTTTAAGTTGCATCTTAACGACATACTACCTTATGGTTTTAACTTGCCATCTGTTTACTTTCCTTGGTAACTATTGATGGGGTGACAGGGTTCAGGCAATCGGTCTAACTCTTACCATGGATGGAGTTAGACATCTTGGCTGTGATTTGAAAATCATCACTCAGTTTGCTTTATACTGCGTATACTTCAATTTATTTTCATCCAAATTTCTTGCTAAAGTTACTATAGCATTGCTTTTGTCCCACCTTGATAACTTTTGTTTCCATCTTTTATTATAGCTTGTTTGATTTTCCTTCTAGTTTAATGGCTTTGTACTGTATTATACAGTTACCTTTGTTTATTGCATTAATTAGCCTGAAAACTCTATCTATGGGTGCTTTTACAATTGCTTTACTGTTGGATCTTGGCAGAAACCAAAGAAGATTCTGTACCAAAGAAAGCCTCCGGTGGATCAATTGACAGGGGTGAGCGTACAGCACGCATCTTATCCCATCTAAGTCTTCTAGTTTTACAACAATAAAATATTTTAAAACTTTTGTGCTGAAATCACAAGATTGTCCTGAAGAATGCTATATTTGCTGTGGTAACAAGTTGATCGTTCACAAACTGACCTGATCCTCAATTGTCTTAGATATCGCTCTTGCGGAGGTTGAAAAGGAGAAAAGGTTTTCCTTCATCAAGGCCTGGGAAGATAGTGAAAAATCAAAGGCTGAGAACAAGTAAGGCTTTGATTGAACTCATCCTATTTACTTATTAGATACAGGGGAACGAGCTGGATTCTGATTCCCAACATTCATTGATGTAATTTCCAAACTTAAAATTCAACTTTTAGCTGTATCACATCAGTATTCATGTCATGATAAGAACTTATGAACTGAAATATTTGTCTGACTATTTAATAGGTCACAGAAGAAGCTCTCTGCTGTTTCTGCATGGGAGAACAGCAAAAAAGCCAACCTTGAAGCAAAGTTGAAAAAAATTGAGGTAACTATTAATTCCTGTTCCTATTCTCGGGTTTAACAACAATTTCCAATTGGATATTTTACTTAGGAGGTGAGCTCTTTATCGAAAACACTCTGCACTTTTTATTAACAACAATCGATAAGAGATTACAAGTGGAAAACACTCGACACTTTTTATTAACACCAATCGAGAAGAGATTAGAACACTATAAAAAAAATTATTGCACCTTATACTTTGTATTTCTTTTGAATGAAAACCTAGTTAGGGTGGAGAATATTTACAATAGAATCTATCCCTAAAATATCTCGATCTTTGGGTGGAGGGTATTTATCTATTCCTAAGATATCTTAATATTTTTCATAAAATATGTGAATTTTTTTCTTAAAATATGTAGGTAGCTTCATTCTTAAAATACCTCAATCATTCATTTTTTTCTAAAATGAATATATGAATATGGGTTCATACAATTAGAGTATAAATGGCAACGACAATTAGAGTAAAAAGAATGGGAAATTTTCTGGATTTAATTTGAGAAAGAAAAGTGGAGAAGGAGAAGTGTGGAATTGTAGTATAACAAGGTTGAGAATAACAGGAACAATTGGAGAAGAAAAAGGCTGAATATGGAGAAAAAATGAAAAACAAAGTAGCCATCATTCACAAAGAAGCAGAAGAAAAGAAGGCAACGGTGGAAGCGCAACGGTCGGAGGAGCTGCTAAAGGCGGAGGAGACGGCTGCCAAATTCCGAGCAACCGGAACCATCCCAAAGAAATTTTTGGGATGTTTTTAAATGTGTGATCAATTAATAATCCTGTGTGTATTTTCCTGTTTTTACGTGTATATCTTTTCATGTTTGGACGTTCGTCTTCGTCTTCTTCGTCTTCGTAGTGTTTAAGAATTTTGTTTTGTTTATATAAAAATGTAAGATAAAAGTGGTGTTTTGGGTTTTGTTTGTGTGTTTCAAAAACTATAGTAAACTTTAAAGGCTCATTATACCATTTACACTGTGAATTGTTCACTAATTATTGCTTTTACTAATTTACC

mRNA sequence

ATATATATACGTAAAGGCCCACAGAGGATAGCGATAAACGTAGGTGAAAATTTTTGGAGATTTTTCATTTCTAATCATTTTTGCTCCGAATTCTGAGAACGATGGTTGCGGCGCCAGAAAATTCCGATTCCTCTCCTGCTTCAGTGCCGCCGCCGGCGTCAGTTGAGGATAAGGAGAAAGCCTTGGTTCCAGTGCCAGTCTCTAATAAAACCAAAGAAGATTCTGTACCAAAGAAAGCCTCCGGTGGATCAATTGACAGGGATATCGCTCTTGCGGAGGTTGAAAAGGAGAAAAGGTTTTCCTTCATCAAGGCCTGGGAAGATAGTGAAAAATCAAAGGCTGAGAACAAGTCACAGAAGAAGCTCTCTGCTGTTTCTGCATGGGAGAACAGCAAAAAAGCCAACCTTGAAGCAAAGTTGAAAAAAATTGAGGAACAATTGGAGAAGAAAAAGGCTGAATATGGAGAAAAAATGAAAAACAAAGTAGCCATCATTCACAAAGAAGCAGAAGAAAAGAAGGCAACGGTGGAAGCGCAACGGTCGGAGGAGCTGCTAAAGGCGGAGGAGACGGCTGCCAAATTCCGAGCAACCGGAACCATCCCAAAGAAATTTTTGGGATGTTTTTAAATGTGTGATCAATTAATAATCCTGTGTGTATTTTCCTGTTTTTACGTGTATATCTTTTCATGTTTGGACGTTCGTCTTCGTCTTCTTCGTCTTCGTAGTGTTTAAGAATTTTGTTTTGTTTATATAAAAATGTAAGATAAAAGTGGTGTTTTGGGTTTTGTTTGTGTGTTTCAAAAACTATAGTAAACTTTAAAGGCTCATTATACCATTTACACTGTGAATTGTTCACTAATTATTGCTTTTACTAATTTACC

Coding sequence (CDS)

ATGGTTGCGGCGCCAGAAAATTCCGATTCCTCTCCTGCTTCAGTGCCGCCGCCGGCGTCAGTTGAGGATAAGGAGAAAGCCTTGGTTCCAGTGCCAGTCTCTAATAAAACCAAAGAAGATTCTGTACCAAAGAAAGCCTCCGGTGGATCAATTGACAGGGATATCGCTCTTGCGGAGGTTGAAAAGGAGAAAAGGTTTTCCTTCATCAAGGCCTGGGAAGATAGTGAAAAATCAAAGGCTGAGAACAAGTCACAGAAGAAGCTCTCTGCTGTTTCTGCATGGGAGAACAGCAAAAAAGCCAACCTTGAAGCAAAGTTGAAAAAAATTGAGGAACAATTGGAGAAGAAAAAGGCTGAATATGGAGAAAAAATGAAAAACAAAGTAGCCATCATTCACAAAGAAGCAGAAGAAAAGAAGGCAACGGTGGAAGCGCAACGGTCGGAGGAGCTGCTAAAGGCGGAGGAGACGGCTGCCAAATTCCGAGCAACCGGAACCATCCCAAAGAAATTTTTGGGATGTTTTTAA

Homology

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BLAST of CmoCh06G010810 vs. Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-45
Identity = 111/172 (64.53%), Postives = 132/172 (76.74%), Query Frame = 1


Query: 11  SPASVPPPASVE-DKEKALVPVPVSNKTK-------EDSVPKKASGGSIDRDIALAEVEK 70
           +PA  P PA VE   EK   P PV +K         E+  PKKAS GS DRD+ LA++EK
Sbjct: 19  APAKEPTPAPVEVADEKIHNPPPVESKALAVVEKPIEEHTPKKASSGSADRDVILADLEK 78

Query: 71  EKRFSFIKAWEDSEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGE 130
           EK+ SFIKAWE+SEKSKAEN++QKK+S V AWENSKKA +EA+L+KIEE+LEKKKA+YGE
Sbjct: 79  EKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGE 138

Query: 131 KMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           KMKNKVA IHK AEEK+A VEA++ EELLKAEE  AK+RATG +PK   GCF
Sbjct: 139 KMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190

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BLAST of CmoCh06G010810 vs. Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.4e-45
Identity = 111/173 (64.16%), Postives = 130/173 (75.14%), Query Frame = 1


Query: 2   VAAPENSDSSPASVPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVE 61
           V A E +  +PA  PP    E  + +   V V  K  E +  KK   GSIDRD  LA V 
Sbjct: 28  VVADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPEPADEKKE--GSIDRDAVLARVA 87

Query: 62  KEKRFSFIKAWEDSEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYG 121
            EKR S IKAWE+SEKSKAENK+QKK+SA+ AWENSKKANLEA+LKK+EEQLEKKKAEY 
Sbjct: 88  TEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYT 147

Query: 122 EKMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           EKMKNK+A++HKEAEEK+A +EA+R E+LLKAEE AAK+RATGT PKK LG F
Sbjct: 148 EKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

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BLAST of CmoCh06G010810 vs. Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.4e-45
Identity = 101/159 (63.52%), Postives = 126/159 (79.25%), Query Frame = 1


Query: 16  PPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAWEDS 75
           PPP  + D  KAL  V    K  E+  P K +  S+DRD+ LA++ KEKR SF++AWE+S
Sbjct: 57  PPPEQIFDDSKALTVV---EKPVEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEES 116

Query: 76  EKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIHKEA 135
           EKSKAENK++KK++ V AWENSKKA +EA+LKKIEEQLEKKKAEY E+MKNKVA IHKEA
Sbjct: 117 EKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEA 176

Query: 136 EEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           EE++A +EA+R E++LKAEETAAK+RATG +PK   GCF
Sbjct: 177 EERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

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BLAST of CmoCh06G010810 vs. TrEMBL
Match: A0A0A0L3M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122490 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.6e-71
Identity = 158/183 (86.34%), Postives = 165/183 (90.16%), Query Frame = 1


Query: 1   MVAAPENSDSSPASVPPPASV---------EDKEKALVPVPVSNKTKEDSVPKKASGGSI 60
           MV APENS S+PA  PPPASV         EDKEKA+V VP+ NKTKED+VPKKASGGSI
Sbjct: 1   MVTAPENSVSTPAPTPPPASVPAGVPSEAVEDKEKAMVTVPIVNKTKEDTVPKKASGGSI 60

Query: 61  DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEE 120
           DRDIALAEVEKEKRFSFIKAWEDSEKSKAENK+QKKLS+V AWENSKKANLEAKLKKIEE
Sbjct: 61  DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSSVLAWENSKKANLEAKLKKIEE 120

Query: 121 QLEKKKAEYGEKMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFL 175
            LEKKKAEYGEKMKNKV +IHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFL
Sbjct: 121 DLEKKKAEYGEKMKNKVVLIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFL 180

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BLAST of CmoCh06G010810 vs. TrEMBL
Match: T2DM60_PHAVU (Remorin family protein OS=Phaseolus vulgaris GN=PHAVU_010G096300g PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.1e-50
Identity = 124/191 (64.92%), Postives = 145/191 (75.92%), Query Frame = 1


Query: 10  SSPASVPPPASVED-----------KEKALVPVPV---------------SNKTKEDSVP 69
           + PASVP PA+VE            K  A VP PV               S KT  + V 
Sbjct: 8   AEPASVPAPATVEPQLAEALDSASKKATAAVPAPVAAETKALAVVEKEKESEKTPPEPVK 67

Query: 70  KKASGGSIDRDIALAEVEKEKRFSFIKAWEDSEKSKAENKSQKKLSAVSAWENSKKANLE 129
           KKA+GGS+DRDIALAE+EKEKRFS +KAWE+SEKSKAENK+QK LSAV+AWENSKKA LE
Sbjct: 68  KKATGGSLDRDIALAEIEKEKRFSNVKAWEESEKSKAENKAQKHLSAVAAWENSKKAALE 127

Query: 130 AKLKKIEEQLEKKKAEYGEKMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRAT 175
           A+L+KIEEQLEKKKAEYGEKMKNK+A++HK+AEEK+ATVEA+R EE+L AEE+AAK+RAT
Sbjct: 128 AQLRKIEEQLEKKKAEYGEKMKNKIALVHKQAEEKRATVEAKRGEEILNAEESAAKYRAT 187

[Close]

BLAST of CmoCh06G010810 vs. TrEMBL
Match: B9RDP4_RICCO (Remorin, putative OS=Ricinus communis GN=RCOM_1614760 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-50
Identity = 121/162 (74.69%), Postives = 135/162 (83.33%), Query Frame = 1


Query: 13  ASVPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAW 72
           A+VP P    D  KAL  V    +   +S PKK SGGS+DRDIALAEVEKEKR SFIKAW
Sbjct: 31  ATVPTPEEKPDDSKALAVV----EKVPESGPKKTSGGSLDRDIALAEVEKEKRNSFIKAW 90

Query: 73  EDSEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIH 132
           EDSEKSKAENK+QKKLS+V+AWENSKKA LEAKL+KIEEQLEKKKAEY EKMKNKVA++H
Sbjct: 91  EDSEKSKAENKAQKKLSSVTAWENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKVALVH 150

Query: 133 KEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           K+AEEK+A VEAQR EE+LKAEE AAK+RATG  PKK LGCF
Sbjct: 151 KQAEEKRAMVEAQRGEEVLKAEEMAAKYRATGQTPKKLLGCF 188

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BLAST of CmoCh06G010810 vs. TrEMBL
Match: A0A067JXN4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14423 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-50
Identity = 119/160 (74.38%), Postives = 133/160 (83.12%), Query Frame = 1


Query: 15  VPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAWED 74
           VPPP    D+ KAL  V    +   +S PKK SGGS+DRDIALAEVEKEKR SFIKAWED
Sbjct: 39  VPPPEEKPDESKALAVV----EKIPESAPKKISGGSLDRDIALAEVEKEKRNSFIKAWED 98

Query: 75  SEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIHKE 134
           SEKSKAENK+QKK SAV AWENSKKA LEAKL+KIEEQLEKKKAEY EKMKNK+A++HK+
Sbjct: 99  SEKSKAENKAQKKKSAVEAWENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKIALVHKQ 158

Query: 135 AEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           AEEK+A VEAQR EE+LKAEE AAK+RATG  P+K LGCF
Sbjct: 159 AEEKRAIVEAQRGEEMLKAEEMAAKYRATGQTPRKLLGCF 194

[Close]

BLAST of CmoCh06G010810 vs. TrEMBL
Match: A0A0B0NLI8_GOSAR (Remorin OS=Gossypium arboreum GN=F383_18453 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 8.7e-49
Identity = 120/184 (65.22%), Postives = 139/184 (75.54%), Query Frame = 1


Query: 6   ENSDSSPASVPPPA----SVEDKEKALVPVPVSNKTKEDSV-----------PKKASGGS 65
           + +++   + PPPA      E +EK + P P   K +E              PKK SGGS
Sbjct: 7   KQAEAETTAAPPPAVEVPKAESEEKTVSPPPAEEKPEESKALVVVEKAPEPEPKKISGGS 66

Query: 66  IDRDIALAEVEKEKRFSFIKAWEDSEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIE 125
            DRDIALAEVEK KR SFIKAWE+SEK+KAENKSQKKLSA+ AWENSKKA+LEAKLKKIE
Sbjct: 67  HDRDIALAEVEKAKRLSFIKAWEESEKTKAENKSQKKLSAIVAWENSKKASLEAKLKKIE 126

Query: 126 EQLEKKKAEYGEKMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKF 175
           EQLEKKKAEY EKMKNKVA++HKEAEEK+A VEA++ EE+LKAEE AAK+RATG  PKK 
Sbjct: 127 EQLEKKKAEYAEKMKNKVALLHKEAEEKRAMVEAKQGEEVLKAEEMAAKYRATGQTPKKV 186

[Close]

BLAST of CmoCh06G010810 vs. TAIR10
Match: AT2G45820.1 (AT2G45820.1 Remorin family protein)

HSP 1 Score: 183.7 bits (465), Expect = 9.5e-47
Identity = 111/172 (64.53%), Postives = 132/172 (76.74%), Query Frame = 1


Query: 11  SPASVPPPASVE-DKEKALVPVPVSNKTK-------EDSVPKKASGGSIDRDIALAEVEK 70
           +PA  P PA VE   EK   P PV +K         E+  PKKAS GS DRD+ LA++EK
Sbjct: 19  APAKEPTPAPVEVADEKIHNPPPVESKALAVVEKPIEEHTPKKASSGSADRDVILADLEK 78

Query: 71  EKRFSFIKAWEDSEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGE 130
           EK+ SFIKAWE+SEKSKAEN++QKK+S V AWENSKKA +EA+L+KIEE+LEKKKA+YGE
Sbjct: 79  EKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGE 138

Query: 131 KMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           KMKNKVA IHK AEEK+A VEA++ EELLKAEE  AK+RATG +PK   GCF
Sbjct: 139 KMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190

[Close]

BLAST of CmoCh06G010810 vs. TAIR10
Match: AT3G61260.1 (AT3G61260.1 Remorin family protein)

HSP 1 Score: 181.8 bits (460), Expect = 3.6e-46
Identity = 101/159 (63.52%), Postives = 126/159 (79.25%), Query Frame = 1


Query: 16  PPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAWEDS 75
           PPP  + D  KAL  V    K  E+  P K +  S+DRD+ LA++ KEKR SF++AWE+S
Sbjct: 57  PPPEQIFDDSKALTVV---EKPVEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEES 116

Query: 76  EKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIHKEA 135
           EKSKAENK++KK++ V AWENSKKA +EA+LKKIEEQLEKKKAEY E+MKNKVA IHKEA
Sbjct: 117 EKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEA 176

Query: 136 EEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           EE++A +EA+R E++LKAEETAAK+RATG +PK   GCF
Sbjct: 177 EERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

[Close]

BLAST of CmoCh06G010810 vs. TAIR10
Match: AT5G23750.1 (AT5G23750.1 Remorin family protein)

HSP 1 Score: 168.3 bits (425), Expect = 4.1e-42
Identity = 105/175 (60.00%), Postives = 130/175 (74.29%), Query Frame = 1


Query: 2   VAAPENSDSSPASVPPPASVEDKE---KALVPVPVSNKTKEDSVPKKASGGSIDRDIALA 61
           VA  E   + P  +P PA  E+K+   KA+VPV      KE    KK   GS++RD  LA
Sbjct: 33  VAPQEKPVAPPPVLPSPAPAEEKQEDSKAIVPVV----PKEVEEEKKE--GSVNRDAVLA 92

Query: 62  EVEKEKRFSFIKAWEDSEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKA 121
            VE EKR S IKAWE++EK K ENK++KKLS++ +WEN+KKA +EA+LKK+EEQLEKKKA
Sbjct: 93  RVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKA 152

Query: 122 EYGEKMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGC 174
           EY E+MKNK+A IHKEAEEK+A +EA+R EE+LKAEE AAK+RATGT PKK  GC
Sbjct: 153 EYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFGC 201

[Close]

BLAST of CmoCh06G010810 vs. TAIR10
Match: AT3G48940.1 (AT3G48940.1 Remorin family protein)

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-39
Identity = 100/165 (60.61%), Postives = 123/165 (74.55%), Query Frame = 1


Query: 13  ASVPPPASVEDKE---KALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFI 72
           AS P P S E+K    KA+V V  + +  ED   KK   GS+ RD  L  +E++KR S I
Sbjct: 16  ASEPSPPSKEEKSDDSKAIVLVVAAKEPTED---KKV--GSVHRDAVLVRLEQDKRISLI 75

Query: 73  KAWEDSEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVA 132
           KAWE++EKSK ENK+QKK+S+V AWENSKKA++EA+LKKIEEQL KKKA Y E+MKNK+A
Sbjct: 76  KAWEEAEKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIA 135

Query: 133 IIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
            IHKEAEEK+A  EA+R E++LKAEE AAK+RATGT P K  G F
Sbjct: 136 QIHKEAEEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFGFF 175

[Close]

BLAST of CmoCh06G010810 vs. TAIR10
Match: AT4G00670.1 (AT4G00670.1 Remorin family protein)

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-18
Identity = 49/113 (43.36%), Postives = 80/113 (70.80%), Query Frame = 1


Query: 63  EKRFSFIKAWEDSEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGE 122
           +++   IKAW++ + +K  NK+QKKL  +S WE  K   +E++L +I+ +++ KK E  E
Sbjct: 11  DEQSKVIKAWKELKITKVNNKTQKKLLDISGWEKKKTTKIESELARIQRKMDSKKMEKSE 70

Query: 123 KMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKK-FLGCF 175
           K++N+ A +H +A++KKA V+ +R++E+L AEE AA+F+A G IPKK  L CF
Sbjct: 71  KLRNEKAAVHAKAQKKKADVQTRRAQEILDAEEAAARFQAAGKIPKKSSLSCF 123

[Close]

BLAST of CmoCh06G010810 vs. NCBI nr
Match: gi|659075279|ref|XP_008438060.1| (PREDICTED: uncharacterized protein At3g61260 [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 2.8e-72
Identity = 160/183 (87.43%), Postives = 166/183 (90.71%), Query Frame = 1


Query: 1   MVAAPENSDSSPASVPPPASV---------EDKEKALVPVPVSNKTKEDSVPKKASGGSI 60
           MV APENSDS+PA  PPPASV         EDKEKA+V VP+ NKTKED VPKKASGGSI
Sbjct: 1   MVTAPENSDSTPAPTPPPASVPAGVPSEAVEDKEKAMVTVPIVNKTKEDPVPKKASGGSI 60

Query: 61  DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEE 120
           DRDIALAEVEKEKRFSFIKAWEDSEKSKAENK+QKKLS+V AWENSKKANLEAKLKKIEE
Sbjct: 61  DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSSVLAWENSKKANLEAKLKKIEE 120

Query: 121 QLEKKKAEYGEKMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFL 175
            LEKKKAEYGEKMKNKVA+IHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFL
Sbjct: 121 DLEKKKAEYGEKMKNKVALIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFL 180

[Close]

BLAST of CmoCh06G010810 vs. NCBI nr
Match: gi|449432167|ref|XP_004133871.1| (PREDICTED: uncharacterized protein At3g61260-like [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 5.2e-71
Identity = 158/183 (86.34%), Postives = 165/183 (90.16%), Query Frame = 1


Query: 1   MVAAPENSDSSPASVPPPASV---------EDKEKALVPVPVSNKTKEDSVPKKASGGSI 60
           MV APENS S+PA  PPPASV         EDKEKA+V VP+ NKTKED+VPKKASGGSI
Sbjct: 1   MVTAPENSVSTPAPTPPPASVPAGVPSEAVEDKEKAMVTVPIVNKTKEDTVPKKASGGSI 60

Query: 61  DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEE 120
           DRDIALAEVEKEKRFSFIKAWEDSEKSKAENK+QKKLS+V AWENSKKANLEAKLKKIEE
Sbjct: 61  DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSSVLAWENSKKANLEAKLKKIEE 120

Query: 121 QLEKKKAEYGEKMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFL 175
            LEKKKAEYGEKMKNKV +IHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFL
Sbjct: 121 DLEKKKAEYGEKMKNKVVLIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFL 180

[Close]

BLAST of CmoCh06G010810 vs. NCBI nr
Match: gi|593265720|ref|XP_007135038.1| (hypothetical protein PHAVU_010G096300g [Phaseolus vulgaris])

HSP 1 Score: 206.8 bits (525), Expect = 3.0e-50
Identity = 124/191 (64.92%), Postives = 145/191 (75.92%), Query Frame = 1


Query: 10  SSPASVPPPASVED-----------KEKALVPVPV---------------SNKTKEDSVP 69
           + PASVP PA+VE            K  A VP PV               S KT  + V 
Sbjct: 8   AEPASVPAPATVEPQLAEALDSASKKATAAVPAPVAAETKALAVVEKEKESEKTPPEPVK 67

Query: 70  KKASGGSIDRDIALAEVEKEKRFSFIKAWEDSEKSKAENKSQKKLSAVSAWENSKKANLE 129
           KKA+GGS+DRDIALAE+EKEKRFS +KAWE+SEKSKAENK+QK LSAV+AWENSKKA LE
Sbjct: 68  KKATGGSLDRDIALAEIEKEKRFSNVKAWEESEKSKAENKAQKHLSAVAAWENSKKAALE 127

Query: 130 AKLKKIEEQLEKKKAEYGEKMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRAT 175
           A+L+KIEEQLEKKKAEYGEKMKNK+A++HK+AEEK+ATVEA+R EE+L AEE+AAK+RAT
Sbjct: 128 AQLRKIEEQLEKKKAEYGEKMKNKIALVHKQAEEKRATVEAKRGEEILNAEESAAKYRAT 187

[Close]

BLAST of CmoCh06G010810 vs. NCBI nr
Match: gi|802695749|ref|XP_012083428.1| (PREDICTED: uncharacterized protein At3g61260-like [Jatropha curcas])

HSP 1 Score: 206.5 bits (524), Expect = 3.9e-50
Identity = 119/160 (74.38%), Postives = 133/160 (83.12%), Query Frame = 1


Query: 15  VPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAWED 74
           VPPP    D+ KAL  V    +   +S PKK SGGS+DRDIALAEVEKEKR SFIKAWED
Sbjct: 39  VPPPEEKPDESKALAVV----EKIPESAPKKISGGSLDRDIALAEVEKEKRNSFIKAWED 98

Query: 75  SEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIHKE 134
           SEKSKAENK+QKK SAV AWENSKKA LEAKL+KIEEQLEKKKAEY EKMKNK+A++HK+
Sbjct: 99  SEKSKAENKAQKKKSAVEAWENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKIALVHKQ 158

Query: 135 AEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           AEEK+A VEAQR EE+LKAEE AAK+RATG  P+K LGCF
Sbjct: 159 AEEKRAIVEAQRGEEMLKAEEMAAKYRATGQTPRKLLGCF 194

[Close]

BLAST of CmoCh06G010810 vs. NCBI nr
Match: gi|255541538|ref|XP_002511833.1| (PREDICTED: remorin [Ricinus communis])

HSP 1 Score: 206.5 bits (524), Expect = 3.9e-50
Identity = 121/162 (74.69%), Postives = 135/162 (83.33%), Query Frame = 1


Query: 13  ASVPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAW 72
           A+VP P    D  KAL  V    +   +S PKK SGGS+DRDIALAEVEKEKR SFIKAW
Sbjct: 31  ATVPTPEEKPDDSKALAVV----EKVPESGPKKTSGGSLDRDIALAEVEKEKRNSFIKAW 90

Query: 73  EDSEKSKAENKSQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIH 132
           EDSEKSKAENK+QKKLS+V+AWENSKKA LEAKL+KIEEQLEKKKAEY EKMKNKVA++H
Sbjct: 91  EDSEKSKAENKAQKKLSSVTAWENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKVALVH 150

Query: 133 KEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           K+AEEK+A VEAQR EE+LKAEE AAK+RATG  PKK LGCF
Sbjct: 151 KQAEEKRAMVEAQRGEEVLKAEEMAAKYRATGQTPKKLLGCF 188

The following BLAST results are available for this feature:

BLAST of CmoCh06G010810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
REMO_ARATH	1.7e-45	64.53	Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1	[more]
REMO_SOLTU	6.4e-45	64.16	Remorin OS=Solanum tuberosum PE=1 SV=1	[more]
Y3126_ARATH	6.4e-45	63.52	Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1	[more]

BLAST of CmoCh06G010810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3M0_CUCSA	3.6e-71	86.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122490 PE=4 SV=1	[more]
T2DM60_PHAVU	2.1e-50	64.92	Remorin family protein OS=Phaseolus vulgaris GN=PHAVU_010G096300g PE=2 SV=1	[more]
B9RDP4_RICCO	2.7e-50	74.69	Remorin, putative OS=Ricinus communis GN=RCOM_1614760 PE=4 SV=1	[more]
A0A067JXN4_JATCU	2.7e-50	74.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14423 PE=4 SV=1	[more]
A0A0B0NLI8_GOSAR	8.7e-49	65.22	Remorin OS=Gossypium arboreum GN=F383_18453 PE=4 SV=1	[more]

BLAST of CmoCh06G010810 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45820.1	9.5e-47	64.53	Remorin family protein	[more]
AT3G61260.1	3.6e-46	63.52	Remorin family protein	[more]
AT5G23750.1	4.1e-42	60.00	Remorin family protein	[more]
AT3G48940.1	1.5e-39	60.61	Remorin family protein	[more]
AT4G00670.1	7.1e-18	43.36	Remorin family protein	[more]

BLAST of CmoCh06G010810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075279\|ref\|XP_008438060.1\|	2.8e-72	87.43	PREDICTED: uncharacterized protein At3g61260 [Cucumis melo]	[more]
gi\|449432167\|ref\|XP_004133871.1\|	5.2e-71	86.34	PREDICTED: uncharacterized protein At3g61260-like [Cucumis sativus]	[more]
gi\|593265720\|ref\|XP_007135038.1\|	3.0e-50	64.92	hypothetical protein PHAVU_010G096300g [Phaseolus vulgaris]	[more]
gi\|802695749\|ref\|XP_012083428.1\|	3.9e-50	74.38	PREDICTED: uncharacterized protein At3g61260-like [Jatropha curcas]	[more]
gi\|255541538\|ref\|XP_002511833.1\|	3.9e-50	74.69	PREDICTED: remorin [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005516	Remorin_C
IPR005518	Remorin_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G010810.1	CmoCh06G010810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 67..169 score: 3.5
IPR005518	Remorin, N-terminal	PFAM	PF03766	Remorin_N	coord: 12..60 score: 2.
None	No IPR available	unknown	Coil	Coil	coord: 132..152 score: -coord: 92..126 scor
None	No IPR available	PANTHER	PTHR31775	FAMILY NOT NAMED	coord: 15..174 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G010810	Cucsa.258280	Cucumber (Gy14) v1	cgycmoB0717
CmoCh06G010810	CmaCh14G020290	Cucurbita maxima (Rimu)	cmacmoB269
CmoCh06G010810	CmaCh06G010600	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G010810	CmaCh06G010200	Cucurbita maxima (Rimu)	cmacmoB831
CmoCh06G010810	Csa3G122490	Cucumber (Chinese Long) v2	cmocuB818
CmoCh06G010810	MELO3C006119	Melon (DHL92) v3.5.1	cmomeB759
CmoCh06G010810	ClCG05G001630	Watermelon (Charleston Gray)	cmowcgB744
CmoCh06G010810	CSPI03G08870	Wild cucumber (PI 183967)	cmocpiB826
CmoCh06G010810	Lsi05G020300	Bottle gourd (USVL1VR-Ls)	cmolsiB753
CmoCh06G010810	Cp4.1LG08g01210	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G010810	MELO3C006119.2	Melon (DHL92) v3.6.1	cmomedB863
CmoCh06G010810	CsaV3_3G009010	Cucumber (Chinese Long) v3	cmocucB0964
CmoCh06G010810	Cla97C05G082020	Watermelon (97103) v2	cmowmbB834
CmoCh06G010810	Bhi01G000264	Wax gourd	cmowgoB1016
CmoCh06G010810	CsGy3G008950	Cucumber (Gy14) v2	cgybcmoB412
CmoCh06G010810	Carg21009	Silver-seed gourd	carcmoB0666
CmoCh06G010810	Carg24637	Silver-seed gourd	carcmoB0521

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G010810	CmoCh14G020910	Cucurbita moschata (Rifu)	cmocmoB223

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G010810	Watermelon (97103) v2	cmowmbB833
CmoCh06G010810	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh06G010810	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G010810	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G010810	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G010810	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G010810	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G010810	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G010810	Watermelon (97103) v1	cmowmB793
CmoCh06G010810	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G010810	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G010810	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G010810	Silver-seed gourd	carcmoB0665
CmoCh06G010810	Cucumber (Chinese Long) v3	cmocucB0953