CmoCh06G004670 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G004670
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBinding
LocationCmo_Chr06 : 2273114 .. 2273326 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGGCTAAATTCGGATCTGTACTTGCAGAACTGTTACATAATGAAGGAAAATGAAAGACTGAGGAAGAAAGCACAGATATTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTGTCGAAAGGGAAAACGAAATCGATCCCTGATCTTAATGTATGCTCTGCTTCGCTTACAAATCCTTCTAATTCTTCACGTTGA

mRNA sequence

ATGGAGAGGCTAAATTCGGATCTGTACTTGCAGAACTGTTACATAATGAAGGAAAATGAAAGACTGAGGAAGAAAGCACAGATATTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTGTCGAAAGGGAAAACGAAATCGATCCCTGATCTTAATGTATGCTCTGCTTCGCTTACAAATCCTTCTAATTCTTCACGTTGA

Coding sequence (CDS)

ATGGAGAGGCTAAATTCGGATCTGTACTTGCAGAACTGTTACATAATGAAGGAAAATGAAAGACTGAGGAAGAAAGCACAGATATTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTGTCGAAAGGGAAAACGAAATCGATCCCTGATCTTAATGTATGCTCTGCTTCGCTTACAAATCCTTCTAATTCTTCACGTTGA
Homology
[Close]
BLAST of CmoCh06G004670 vs. Swiss-Prot
Match: ZPR4_ARATH (Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana GN=ZPR4 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-15
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS 52
          MERLNS LYLQNCYI+KENERLRKKAQILNQENQ LL ELKQKLSK K  S
Sbjct: 1  MERLNSKLYLQNCYIIKENERLRKKAQILNQENQQLLFELKQKLSKTKNSS 51

[Close]
BLAST of CmoCh06G004670 vs. Swiss-Prot
Match: ZPR3_ARATH (Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana GN=ZPR3 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.4e-13
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS 52
          MERLNS L+++NCYIMKENERLRKKA++LNQENQ LL +LKQKLSK K  +
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSN 51

[Close]
BLAST of CmoCh06G004670 vs. TrEMBL
Match: V4S7L4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013416mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-21
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK---SIPDLNV 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL+ G +K   +IPDLN+
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAPNNIPDLNL 60

Query: 61 CSASLTNPSNSSR 71
          CS+S TNPSNSS+
Sbjct: 61 CSSSNTNPSNSSK 73

[Close]
BLAST of CmoCh06G004670 vs. TrEMBL
Match: A0A067F196_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047813mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-21
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK---SIPDLNV 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL+ G +K   +IPDLN+
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAPNNIPDLNL 60

Query: 61 CSASLTNPSNSSR 71
          CS+S TNPSNSS+
Sbjct: 61 CSSSNTNPSNSSK 73

[Close]
BLAST of CmoCh06G004670 vs. TrEMBL
Match: A0A0A0LE03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G776310 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-19
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGK-----TKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG      +KSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NVCSASLTNPSNSS 70
          N+ SA   NPSNSS
Sbjct: 61 NLSSA---NPSNSS 71

[Close]
BLAST of CmoCh06G004670 vs. TrEMBL
Match: A0A0D2QAN8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G156000 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-19
Identity = 58/78 (74.36%), Postives = 62/78 (79.49%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS--------I 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSK    S        I
Sbjct: 3  MERLNSNLYLQNCYIMKENERLRKKAQVLNQENQALLSELKQKLSKANNNSKGKNSANTI 62

Query: 61 PDLNVCSASLTNPSNSSR 71
          PDLN+ S S  NPSNSS+
Sbjct: 63 PDLNLSSTSNPNPSNSSK 80

[Close]
BLAST of CmoCh06G004670 vs. TrEMBL
Match: A0A067L2W9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23672 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.8e-19
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK------SIPD 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSK  +K      +IPD
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKSNSKANASNTTIPD 60

Query: 61 LNVCSASLTNPSNSS 70
          LN+ S+S  NP+NSS
Sbjct: 61 LNLSSSSTHNPTNSS 75

[Close]
BLAST of CmoCh06G004670 vs. TAIR10
Match: AT3G52770.1 (AT3G52770.1 protein binding)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-14
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS 52
          MERLNS L+++NCYIMKENERLRKKA++LNQENQ LL +LKQKLSK K  +
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSN 51

[Close]
BLAST of CmoCh06G004670 vs. NCBI nr
Match: gi|567875287|ref|XP_006430233.1| (hypothetical protein CICLE_v10013416mg [Citrus clementina])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-21
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK---SIPDLNV 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL+ G +K   +IPDLN+
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAPNNIPDLNL 60

Query: 61 CSASLTNPSNSSR 71
          CS+S TNPSNSS+
Sbjct: 61 CSSSNTNPSNSSK 73

[Close]
BLAST of CmoCh06G004670 vs. NCBI nr
Match: gi|568856447|ref|XP_006481795.1| (PREDICTED: protein LITTLE ZIPPER 4-like [Citrus sinensis])

HSP 1 Score: 109.0 bits (271), Expect = 3.4e-21
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK-----SIPDL 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL+ G +K     +IPDL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKANAPNNIPDL 60

Query: 61 NVCSASLTNPSNSSR 71
          N+CS+S TNPSNSS+
Sbjct: 61 NLCSSSNTNPSNSSK 75

[Close]
BLAST of CmoCh06G004670 vs. NCBI nr
Match: gi|659084321|ref|XP_008442826.1| (PREDICTED: uncharacterized protein LOC103486597 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGK-----TKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG      +KSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NVCSASLTNPSNSS 70
          N+ SA   NPSNSS
Sbjct: 61 NLSSA---NPSNSS 71

[Close]
BLAST of CmoCh06G004670 vs. NCBI nr
Match: gi|763769163|gb|KJB36378.1| (hypothetical protein B456_006G156000 [Gossypium raimondii])

HSP 1 Score: 102.1 bits (253), Expect = 4.2e-19
Identity = 58/78 (74.36%), Postives = 62/78 (79.49%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS--------I 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSK    S        I
Sbjct: 3  MERLNSNLYLQNCYIMKENERLRKKAQVLNQENQALLSELKQKLSKANNNSKGKNSANTI 62

Query: 61 PDLNVCSASLTNPSNSSR 71
          PDLN+ S S  NPSNSS+
Sbjct: 63 PDLNLSSTSNPNPSNSSK 80

[Close]
BLAST of CmoCh06G004670 vs. NCBI nr
Match: gi|643736413|gb|KDP42732.1| (hypothetical protein JCGZ_23672 [Jatropha curcas])

HSP 1 Score: 101.7 bits (252), Expect = 5.4e-19
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK------SIPD 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSK  +K      +IPD
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKSNSKANASNTTIPD 60

Query: 61 LNVCSASLTNPSNSS 70
          LN+ S+S  NP+NSS
Sbjct: 61 LNLSSSSTHNPTNSS 75

The following BLAST results are available for this feature:
BLAST of CmoCh06G004670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ZPR4_ARATH3.6e-1586.27Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana GN=ZPR4 PE=1 SV=1[more]
ZPR3_ARATH3.4e-1374.51Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana GN=ZPR3 PE=1 SV=1[more]
BLAST of CmoCh06G004670 vs. TrEMBL
Match NameE-valueIdentityDescription
V4S7L4_9ROSI1.4e-2180.82Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013416mg PE=4 SV=1[more]
A0A067F196_CITSI1.4e-2180.82Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047813mg PE=4 SV=1[more]
A0A0A0LE03_CUCSA1.0e-1981.08Uncharacterized protein OS=Cucumis sativus GN=Csa_3G776310 PE=4 SV=1[more]
A0A0D2QAN8_GOSRA2.9e-1974.36Uncharacterized protein OS=Gossypium raimondii GN=B456_006G156000 PE=4 SV=1[more]
A0A067L2W9_JATCU3.8e-1976.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23672 PE=4 SV=1[more]
BLAST of CmoCh06G004670 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52770.11.9e-1474.51 protein binding[more]
BLAST of CmoCh06G004670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|567875287|ref|XP_006430233.1|2.0e-2180.82hypothetical protein CICLE_v10013416mg [Citrus clementina][more]
gi|568856447|ref|XP_006481795.1|3.4e-2178.67PREDICTED: protein LITTLE ZIPPER 4-like [Citrus sinensis][more]
gi|659084321|ref|XP_008442826.1|1.4e-1981.08PREDICTED: uncharacterized protein LOC103486597 [Cucumis melo][more]
gi|763769163|gb|KJB36378.1|4.2e-1974.36hypothetical protein B456_006G156000 [Gossypium raimondii][more]
gi|643736413|gb|KDP42732.1|5.4e-1976.00hypothetical protein JCGZ_23672 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009943 adaxial/abaxial axis specification
biological_process GO:0006914 autophagy
biological_process GO:0009062 fatty acid catabolic process
biological_process GO:0010358 leaf shaping
biological_process GO:0010305 leaf vascular tissue pattern formation
biological_process GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G004670.1CmoCh06G004670.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 19..46
scor
NoneNo IPR availablePANTHERPTHR33601FAMILY NOT NAMEDcoord: 1..69
score: 4.4
NoneNo IPR availablePANTHERPTHR33601:SF7PROTEIN LITTLE ZIPPER 3coord: 1..69
score: 4.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh06G004670CmaCh06G004650Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G004670Cp4.1LG08g10290Cucurbita pepo (Zucchini)cmocpeB797
CmoCh06G004670MELO3C009461.2Melon (DHL92) v3.6.1cmomedB849
CmoCh06G004670CsaV3_3G037150Cucumber (Chinese Long) v3cmocucB0954
CmoCh06G004670Cla97C10G202130Watermelon (97103) v2cmowmbB818
CmoCh06G004670Bhi11G001640Wax gourdcmowgoB0981
CmoCh06G004670Carg03684Silver-seed gourdcarcmoB0351
CmoCh06G004670Carg14527Silver-seed gourdcarcmoB0208
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh06G004670CmoCh14G002900Cucurbita moschata (Rifu)cmocmoB222
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G004670Silver-seed gourdcarcmoB0337
CmoCh06G004670Silver-seed gourdcarcmoB1099
CmoCh06G004670Cucumber (Chinese Long) v3cmocucB0951
CmoCh06G004670Cucumber (Chinese Long) v3cmocucB0979
CmoCh06G004670Watermelon (97103) v2cmowmbB811
CmoCh06G004670Watermelon (97103) v2cmowmbB832
CmoCh06G004670Wax gourdcmowgoB0983
CmoCh06G004670Cucurbita moschata (Rifu)cmocmoB454
CmoCh06G004670Cucurbita moschata (Rifu)cmocmoB483
CmoCh06G004670Cucumber (Gy14) v1cgycmoB0149
CmoCh06G004670Cucumber (Gy14) v1cgycmoB0681
CmoCh06G004670Cucurbita maxima (Rimu)cmacmoB268
CmoCh06G004670Cucurbita maxima (Rimu)cmacmoB665
CmoCh06G004670Cucurbita maxima (Rimu)cmacmoB874
CmoCh06G004670Wild cucumber (PI 183967)cmocpiB810
CmoCh06G004670Wild cucumber (PI 183967)cmocpiB816
CmoCh06G004670Wild cucumber (PI 183967)cmocpiB838
CmoCh06G004670Cucumber (Chinese Long) v2cmocuB808
CmoCh06G004670Cucumber (Chinese Long) v2cmocuB828
CmoCh06G004670Melon (DHL92) v3.5.1cmomeB747
CmoCh06G004670Melon (DHL92) v3.5.1cmomeB763
CmoCh06G004670Watermelon (Charleston Gray)cmowcgB729
CmoCh06G004670Watermelon (Charleston Gray)cmowcgB742
CmoCh06G004670Watermelon (97103) v1cmowmB782
CmoCh06G004670Watermelon (97103) v1cmowmB797
CmoCh06G004670Cucurbita pepo (Zucchini)cmocpeB761
CmoCh06G004670Cucurbita pepo (Zucchini)cmocpeB782
CmoCh06G004670Cucurbita pepo (Zucchini)cmocpeB783
CmoCh06G004670Bottle gourd (USVL1VR-Ls)cmolsiB740
CmoCh06G004670Bottle gourd (USVL1VR-Ls)cmolsiB747
CmoCh06G004670Cucumber (Gy14) v2cgybcmoB130
CmoCh06G004670Cucumber (Gy14) v2cgybcmoB402
CmoCh06G004670Cucumber (Gy14) v2cgybcmoB833
CmoCh06G004670Melon (DHL92) v3.6.1cmomedB867