CmoCh06G004670.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G004670.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Binding
Location	Cmo_Chr06 : 2273114 .. 2273326 (+)
Sequence length	213

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGCTAAATTCGGATCTGTACTTGCAGAACTGTTACATAATGAAGGAAAATGAAAGACTGAGGAAGAAAGCACAGATATTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTGTCGAAAGGGAAAACGAAATCGATCCCTGATCTTAATGTATGCTCTGCTTCGCTTACAAATCCTTCTAATTCTTCACGTTGA

mRNA sequence

ATGGAGAGGCTAAATTCGGATCTGTACTTGCAGAACTGTTACATAATGAAGGAAAATGAAAGACTGAGGAAGAAAGCACAGATATTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTGTCGAAAGGGAAAACGAAATCGATCCCTGATCTTAATGTATGCTCTGCTTCGCTTACAAATCCTTCTAATTCTTCACGTTGA

Coding sequence (CDS)

ATGGAGAGGCTAAATTCGGATCTGTACTTGCAGAACTGTTACATAATGAAGGAAAATGAAAGACTGAGGAAGAAAGCACAGATATTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTGTCGAAAGGGAAAACGAAATCGATCCCTGATCTTAATGTATGCTCTGCTTCGCTTACAAATCCTTCTAATTCTTCACGTTGA

Homology

[Close]

BLAST of CmoCh06G004670.1 vs. Swiss-Prot
Match: ZPR4_ARATH (Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana GN=ZPR4 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-15
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS 52
          MERLNS LYLQNCYI+KENERLRKKAQILNQENQ LL ELKQKLSK K  S
Sbjct: 1  MERLNSKLYLQNCYIIKENERLRKKAQILNQENQQLLFELKQKLSKTKNSS 51

[Close]

BLAST of CmoCh06G004670.1 vs. Swiss-Prot
Match: ZPR3_ARATH (Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana GN=ZPR3 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.4e-13
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS 52
          MERLNS L+++NCYIMKENERLRKKA++LNQENQ LL +LKQKLSK K  +
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSN 51

[Close]

BLAST of CmoCh06G004670.1 vs. TrEMBL
Match: V4S7L4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013416mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-21
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK---SIPDLNV 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL+ G +K   +IPDLN+
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAPNNIPDLNL 60

Query: 61 CSASLTNPSNSSR 71
          CS+S TNPSNSS+
Sbjct: 61 CSSSNTNPSNSSK 73

[Close]

BLAST of CmoCh06G004670.1 vs. TrEMBL
Match: A0A067F196_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047813mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-21
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK---SIPDLNV 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL+ G +K   +IPDLN+
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAPNNIPDLNL 60

Query: 61 CSASLTNPSNSSR 71
          CS+S TNPSNSS+
Sbjct: 61 CSSSNTNPSNSSK 73

[Close]

BLAST of CmoCh06G004670.1 vs. TrEMBL
Match: A0A0A0LE03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G776310 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-19
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGK-----TKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG      +KSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NVCSASLTNPSNSS 70
          N+ SA   NPSNSS
Sbjct: 61 NLSSA---NPSNSS 71

[Close]

BLAST of CmoCh06G004670.1 vs. TrEMBL
Match: A0A0D2QAN8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G156000 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-19
Identity = 58/78 (74.36%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS--------I 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSK    S        I
Sbjct: 3  MERLNSNLYLQNCYIMKENERLRKKAQVLNQENQALLSELKQKLSKANNNSKGKNSANTI 62

Query: 61 PDLNVCSASLTNPSNSSR 71
          PDLN+ S S  NPSNSS+
Sbjct: 63 PDLNLSSTSNPNPSNSSK 80

[Close]

BLAST of CmoCh06G004670.1 vs. TrEMBL
Match: A0A067L2W9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23672 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.8e-19
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK------SIPD 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSK  +K      +IPD
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKSNSKANASNTTIPD 60

Query: 61 LNVCSASLTNPSNSS 70
          LN+ S+S  NP+NSS
Sbjct: 61 LNLSSSSTHNPTNSS 75

[Close]

BLAST of CmoCh06G004670.1 vs. TAIR10
Match: AT3G52770.1 (AT3G52770.1 protein binding)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-14
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS 52
          MERLNS L+++NCYIMKENERLRKKA++LNQENQ LL +LKQKLSK K  +
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSN 51

[Close]

BLAST of CmoCh06G004670.1 vs. NCBI nr
Match: gi|567875287|ref|XP_006430233.1| (hypothetical protein CICLE_v10013416mg [Citrus clementina])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-21
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK---SIPDLNV 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL+ G +K   +IPDLN+
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAPNNIPDLNL 60

Query: 61 CSASLTNPSNSSR 71
          CS+S TNPSNSS+
Sbjct: 61 CSSSNTNPSNSSK 73

[Close]

BLAST of CmoCh06G004670.1 vs. NCBI nr
Match: gi|568856447|ref|XP_006481795.1| (PREDICTED: protein LITTLE ZIPPER 4-like [Citrus sinensis])

HSP 1 Score: 109.0 bits (271), Expect = 3.4e-21
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK-----SIPDL 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL+ G +K     +IPDL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKANAPNNIPDL 60

Query: 61 NVCSASLTNPSNSSR 71
          N+CS+S TNPSNSS+
Sbjct: 61 NLCSSSNTNPSNSSK 75

[Close]

BLAST of CmoCh06G004670.1 vs. NCBI nr
Match: gi|659084321|ref|XP_008442826.1| (PREDICTED: uncharacterized protein LOC103486597 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGK-----TKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG      +KSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NVCSASLTNPSNSS 70
          N+ SA   NPSNSS
Sbjct: 61 NLSSA---NPSNSS 71

[Close]

BLAST of CmoCh06G004670.1 vs. NCBI nr
Match: gi|763769163|gb|KJB36378.1| (hypothetical protein B456_006G156000 [Gossypium raimondii])

HSP 1 Score: 102.1 bits (253), Expect = 4.2e-19
Identity = 58/78 (74.36%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS--------I 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSK    S        I
Sbjct: 3  MERLNSNLYLQNCYIMKENERLRKKAQVLNQENQALLSELKQKLSKANNNSKGKNSANTI 62

Query: 61 PDLNVCSASLTNPSNSSR 71
          PDLN+ S S  NPSNSS+
Sbjct: 63 PDLNLSSTSNPNPSNSSK 80

[Close]

BLAST of CmoCh06G004670.1 vs. NCBI nr
Match: gi|643736413|gb|KDP42732.1| (hypothetical protein JCGZ_23672 [Jatropha curcas])

HSP 1 Score: 101.7 bits (252), Expect = 5.4e-19
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK------SIPD 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSK  +K      +IPD
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKSNSKANASNTTIPD 60

Query: 61 LNVCSASLTNPSNSS 70
          LN+ S+S  NP+NSS
Sbjct: 61 LNLSSSSTHNPTNSS 75

The following BLAST results are available for this feature:

BLAST of CmoCh06G004670.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZPR4_ARATH	3.6e-15	86.27	Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana GN=ZPR4 PE=1 SV=1	[more]
ZPR3_ARATH	3.4e-13	74.51	Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana GN=ZPR3 PE=1 SV=1	[more]

BLAST of CmoCh06G004670.1 vs. TrEMBL


Match Name	E-value	Identity	Description
V4S7L4_9ROSI	1.4e-21	80.82	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013416mg PE=4 SV=1	[more]
A0A067F196_CITSI	1.4e-21	80.82	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047813mg PE=4 SV=1	[more]
A0A0A0LE03_CUCSA	1.0e-19	81.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G776310 PE=4 SV=1	[more]
A0A0D2QAN8_GOSRA	2.9e-19	74.36	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G156000 PE=4 SV=1	[more]
A0A067L2W9_JATCU	3.8e-19	76.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23672 PE=4 SV=1	[more]

BLAST of CmoCh06G004670.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52770.1	1.9e-14	74.51	protein binding	[more]

BLAST of CmoCh06G004670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|567875287\|ref\|XP_006430233.1\|	2.0e-21	80.82	hypothetical protein CICLE_v10013416mg [Citrus clementina]	[more]
gi\|568856447\|ref\|XP_006481795.1\|	3.4e-21	78.67	PREDICTED: protein LITTLE ZIPPER 4-like [Citrus sinensis]	[more]
gi\|659084321\|ref\|XP_008442826.1\|	1.4e-19	81.08	PREDICTED: uncharacterized protein LOC103486597 [Cucumis melo]	[more]
gi\|763769163\|gb\|KJB36378.1\|	4.2e-19	74.36	hypothetical protein B456_006G156000 [Gossypium raimondii]	[more]
gi\|643736413\|gb\|KDP42732.1\|	5.4e-19	76.00	hypothetical protein JCGZ_23672 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009943	adaxial/abaxial axis specification
biological_process	GO:0006914	autophagy
biological_process	GO:0009062	fatty acid catabolic process
biological_process	GO:0010358	leaf shaping
biological_process	GO:0010305	leaf vascular tissue pattern formation
biological_process	GO:0043433	negative regulation of sequence-specific DNA binding transcription factor activity
biological_process	GO:0010075	regulation of meristem growth
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G004670	CmoCh06G004670	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G004670.1	CmoCh06G004670.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G004670.1.exon.1	CmoCh06G004670.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G004670.1.CDS.1	CmoCh06G004670.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 19..46 scor
None	No IPR available	PANTHER	PTHR33601	FAMILY NOT NAMED	coord: 1..69 score: 4.4
None	No IPR available	PANTHER	PTHR33601:SF7	PROTEIN LITTLE ZIPPER 3	coord: 1..69 score: 4.4