CmoCh14G002900 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G002900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionProtein little zipper 3
LocationCmo_Chr14 : 1349564 .. 1349782 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGGCTAAACTCAGAGCTGTACTTGCAGAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAACTTTTGAACCAAGAAAATCAAGCACTGCTTTCGGAACTGAAGCAGAAATTATCTAAAGGAAGTTCAAAGGCCAATTCCTCAAAATCAATCCCTGATCTTAATCTCTCCTCTGCAAATCCTTCAAATTCTTCCAACTGA

mRNA sequence

ATGGAGAGGCTAAACTCAGAGCTGTACTTGCAGAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAACTTTTGAACCAAGAAAATCAAGCACTGCTTTCGGAACTGAAGCAGAAATTATCTAAAGGAAGTTCAAAGGCCAATTCCTCAAAATCAATCCCTGATCTTAATCTCTCCTCTGCAAATCCTTCAAATTCTTCCAACTGA

Coding sequence (CDS)

ATGGAGAGGCTAAACTCAGAGCTGTACTTGCAGAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAACTTTTGAACCAAGAAAATCAAGCACTGCTTTCGGAACTGAAGCAGAAATTATCTAAAGGAAGTTCAAAGGCCAATTCCTCAAAATCAATCCCTGATCTTAATCTCTCCTCTGCAAATCCTTCAAATTCTTCCAACTGA
Homology
[Close]
BLAST of CmoCh14G002900 vs. Swiss-Prot
Match: ZPR4_ARATH (Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana GN=ZPR4 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.2e-14
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLS--KGSSKANSSKSIP 60
          MERLNS+LYLQNCYI+KENERLRKKAQ+LNQENQ LL ELKQKLS  K SS +N   +  
Sbjct: 1  MERLNSKLYLQNCYIIKENERLRKKAQILNQENQQLLFELKQKLSKTKNSSGSNQGNNNN 60

Query: 61 DLNLSSANPSN 70
          + NLSS++ ++
Sbjct: 61 NNNLSSSSSAS 71

[Close]
BLAST of CmoCh14G002900 vs. Swiss-Prot
Match: ZPR3_ARATH (Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana GN=ZPR3 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-12
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60
          MERLNS+L+++NCYIMKENERLRKKA+LLNQENQ LL +LKQKLSK  +  N S +  D 
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNN--DN 60

Query: 61 NLSSAN 67
            SSA+
Sbjct: 61 KSSSAS 64

[Close]
BLAST of CmoCh14G002900 vs. TrEMBL
Match: A0A0A0LE03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G776310 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.6e-26
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSANPSNSSN 73
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]
BLAST of CmoCh14G002900 vs. TrEMBL
Match: V7BHJ4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G229000g PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.0e-20
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+ KAN+S SI DL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNQKANASNSILDL 60

Query: 61 NLSSA---NPSNSSN 73
          +LSS+   NPS+SSN
Sbjct: 61 SLSSSGSQNPSSSSN 75

[Close]
BLAST of CmoCh14G002900 vs. TrEMBL
Match: A0A067L2W9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23672 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-19
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSK-SIPD 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSK +SKAN+S  +IPD
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKSNSKANASNTTIPD 60

Query: 61 LNLSSA---NPSNSS 72
          LNLSS+   NP+NSS
Sbjct: 61 LNLSSSSTHNPTNSS 75

[Close]
BLAST of CmoCh14G002900 vs. TrEMBL
Match: B9SRV7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0516380 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.7e-19
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKAN-SSKSIPD 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKL+K +SKAN S+ +IPD
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLTKTNSKANASNNTIPD 60

Query: 61 LNLSSA---NPSNSS 72
          LNLSS    NP+NSS
Sbjct: 61 LNLSSTSTQNPTNSS 75

[Close]
BLAST of CmoCh14G002900 vs. TrEMBL
Match: A0A151RIZ1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_036033 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 60/75 (80.00%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+ KAN+S +I DL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNQKANASNAILDL 60

Query: 61 NLSSAN---PSNSSN 73
          +LSS++   PS+S+N
Sbjct: 61 SLSSSSSQKPSSSNN 75

[Close]
BLAST of CmoCh14G002900 vs. TAIR10
Match: AT3G52770.1 (AT3G52770.1 protein binding)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-13
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60
          MERLNS+L+++NCYIMKENERLRKKA+LLNQENQ LL +LKQKLSK  +  N S +  D 
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNN--DN 60

Query: 61 NLSSAN 67
            SSA+
Sbjct: 61 KSSSAS 64

[Close]
BLAST of CmoCh14G002900 vs. NCBI nr
Match: gi|659084321|ref|XP_008442826.1| (PREDICTED: uncharacterized protein LOC103486597 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSANPSNSSN 73
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]
BLAST of CmoCh14G002900 vs. NCBI nr
Match: gi|1009161201|ref|XP_015898769.1| (PREDICTED: protein LITTLE ZIPPER 3 [Ziziphus jujuba])

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-20
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKL+K +SK+N++K+IPDL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLTKTNSKSNAAKAIPDL 60

Query: 61 NLSSA---NPSNSSN 73
          NLSS+   NPS SSN
Sbjct: 61 NLSSSSNQNPSGSSN 75

[Close]
BLAST of CmoCh14G002900 vs. NCBI nr
Match: gi|593689398|ref|XP_007145318.1| (hypothetical protein PHAVU_007G229000g [Phaseolus vulgaris])

HSP 1 Score: 104.4 bits (259), Expect = 8.6e-20
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+ KAN+S SI DL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNQKANASNSILDL 60

Query: 61 NLSSA---NPSNSSN 73
          +LSS+   NPS+SSN
Sbjct: 61 SLSSSGSQNPSSSSN 75

[Close]
BLAST of CmoCh14G002900 vs. NCBI nr
Match: gi|568856447|ref|XP_006481795.1| (PREDICTED: protein LITTLE ZIPPER 4-like [Citrus sinensis])

HSP 1 Score: 104.4 bits (259), Expect = 8.6e-20
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKL+ G+SKAN+  +IPDL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKANAPNNIPDL 60

Query: 61 NL---SSANPSNSS 72
          NL   S+ NPSNSS
Sbjct: 61 NLCSSSNTNPSNSS 74

[Close]
BLAST of CmoCh14G002900 vs. NCBI nr
Match: gi|643736413|gb|KDP42732.1| (hypothetical protein JCGZ_23672 [Jatropha curcas])

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-19
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSK-SIPD 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSK +SKAN+S  +IPD
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKSNSKANASNTTIPD 60

Query: 61 LNLSSA---NPSNSS 72
          LNLSS+   NP+NSS
Sbjct: 61 LNLSSSSTHNPTNSS 75

The following BLAST results are available for this feature:
BLAST of CmoCh14G002900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ZPR4_ARATH9.2e-1467.61Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana GN=ZPR4 PE=1 SV=1[more]
ZPR3_ARATH3.0e-1266.67Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana GN=ZPR3 PE=1 SV=1[more]
BLAST of CmoCh14G002900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LE03_CUCSA9.6e-2697.22Uncharacterized protein OS=Cucumis sativus GN=Csa_3G776310 PE=4 SV=1[more]
V7BHJ4_PHAVU6.0e-2084.00Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G229000g PE=4 SV=1[more]
A0A067L2W9_JATCU1.7e-1984.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23672 PE=4 SV=1[more]
B9SRV7_RICCO8.7e-1982.67Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0516380 PE=4 SV=1[more]
A0A151RIZ1_CAJCA1.1e-1880.00Uncharacterized protein OS=Cajanus cajan GN=KK1_036033 PE=4 SV=1[more]
BLAST of CmoCh14G002900 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52770.11.7e-1366.67 protein binding[more]
BLAST of CmoCh14G002900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659084321|ref|XP_008442826.1|1.4e-2597.22PREDICTED: uncharacterized protein LOC103486597 [Cucumis melo][more]
gi|1009161201|ref|XP_015898769.1|3.9e-2082.67PREDICTED: protein LITTLE ZIPPER 3 [Ziziphus jujuba][more]
gi|593689398|ref|XP_007145318.1|8.6e-2084.00hypothetical protein PHAVU_007G229000g [Phaseolus vulgaris][more]
gi|568856447|ref|XP_006481795.1|8.6e-2082.43PREDICTED: protein LITTLE ZIPPER 4-like [Citrus sinensis][more]
gi|643736413|gb|KDP42732.1|2.5e-1984.00hypothetical protein JCGZ_23672 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009943 adaxial/abaxial axis specification
biological_process GO:0006914 autophagy
biological_process GO:0009062 fatty acid catabolic process
biological_process GO:0010358 leaf shaping
biological_process GO:0010305 leaf vascular tissue pattern formation
biological_process GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity
biological_process GO:0010075 regulation of meristem growth
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G002900.1CmoCh14G002900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 19..46
scor
NoneNo IPR availablePANTHERPTHR33601FAMILY NOT NAMEDcoord: 1..72
score: 6.9
NoneNo IPR availablePANTHERPTHR33601:SF7PROTEIN LITTLE ZIPPER 3coord: 1..72
score: 6.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G002900CmaCh06G004650Cucurbita maxima (Rimu)cmacmoB792
CmoCh14G002900CSPI03G34780Wild cucumber (PI 183967)cmocpiB229
CmoCh14G002900CsaV3_3G037150Cucumber (Chinese Long) v3cmocucB0270
CmoCh14G002900Bhi11G001640Wax gourdcmowgoB0287
CmoCh14G002900Carg14527Silver-seed gourdcarcmoB0203
CmoCh14G002900Carg03684Silver-seed gourdcarcmoB0347
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh14G002900CmoCh06G004670Cucurbita moschata (Rifu)cmocmoB222
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G002900Cucurbita pepo (Zucchini)cmocpeB218
CmoCh14G002900Cucurbita pepo (Zucchini)cmocpeB240
CmoCh14G002900Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G002900Cucurbita pepo (Zucchini)cmocpeB259
CmoCh14G002900Bottle gourd (USVL1VR-Ls)cmolsiB230
CmoCh14G002900Bottle gourd (USVL1VR-Ls)cmolsiB215
CmoCh14G002900Bottle gourd (USVL1VR-Ls)cmolsiB218
CmoCh14G002900Cucumber (Gy14) v2cgybcmoB279
CmoCh14G002900Cucumber (Gy14) v2cgybcmoB712
CmoCh14G002900Cucumber (Gy14) v2cgybcmoB715
CmoCh14G002900Melon (DHL92) v3.6.1cmomedB224
CmoCh14G002900Melon (DHL92) v3.6.1cmomedB244
CmoCh14G002900Melon (DHL92) v3.6.1cmomedB268
CmoCh14G002900Silver-seed gourdcarcmoB0334
CmoCh14G002900Silver-seed gourdcarcmoB1088
CmoCh14G002900Cucumber (Chinese Long) v3cmocucB0302
CmoCh14G002900Cucumber (Chinese Long) v3cmocucB0305
CmoCh14G002900Watermelon (97103) v2cmowmbB239
CmoCh14G002900Watermelon (97103) v2cmowmbB230
CmoCh14G002900Watermelon (97103) v2cmowmbB235
CmoCh14G002900Wax gourdcmowgoB0286
CmoCh14G002900Wax gourdcmowgoB0341
CmoCh14G002900Cucurbita moschata (Rifu)cmocmoB217
CmoCh14G002900Cucurbita moschata (Rifu)cmocmoB228
CmoCh14G002900Cucumber (Gy14) v1cgycmoB0146
CmoCh14G002900Cucumber (Gy14) v1cgycmoB0675
CmoCh14G002900Cucumber (Gy14) v1cgycmoB1062
CmoCh14G002900Cucurbita maxima (Rimu)cmacmoB244
CmoCh14G002900Cucurbita maxima (Rimu)cmacmoB640
CmoCh14G002900Cucurbita maxima (Rimu)cmacmoB848
CmoCh14G002900Wild cucumber (PI 183967)cmocpiB259
CmoCh14G002900Cucumber (Chinese Long) v2cmocuB226
CmoCh14G002900Cucumber (Chinese Long) v2cmocuB253
CmoCh14G002900Cucumber (Chinese Long) v2cmocuB255
CmoCh14G002900Melon (DHL92) v3.5.1cmomeB215
CmoCh14G002900Melon (DHL92) v3.5.1cmomeB236
CmoCh14G002900Watermelon (Charleston Gray)cmowcgB207
CmoCh14G002900Watermelon (Charleston Gray)cmowcgB211
CmoCh14G002900Watermelon (Charleston Gray)cmowcgB214
CmoCh14G002900Watermelon (97103) v1cmowmB214
CmoCh14G002900Watermelon (97103) v1cmowmB236
CmoCh14G002900Watermelon (97103) v1cmowmB237