CmoCh05G010240 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G010240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Ethylene-responsive element binding protein 2) (Ethylene-responsive transcription factor 7)
Location	Cmo_Chr05 : 8254406 .. 8255002 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACAATAATAATCCACCAGAGCTCAGCCAGACCTCCGCCGCCTCCGCCGCCGGTGACACCAAATACAAAGGTGTACGACGACGGAAATGGGGTAAATGGGTAGCGGAAATCCGCCTCCCCAACAGCCGCGACAGAATATGGCTCGGTTCCTACGACTCGCCGGAGAAAGCTGCCCGTGCTTTTGACGCTGCCCTCTTTTGCCTACGTGGCCGACAAGCTAAGTTCAACTTCCCCAACCAACCACTGCCCGACATTCTCGACGCTCACTCTCTCACTGCCCATGAAATCCAACAGCTGGCAGCTAAATTCGCTAATGATTATCAACACTCCTCCAGTAGTGCTGACCAAAACAACGCCGACGTTGACCGTCTCCAAGCTCCTCCCGCCACCTCCGACCAAAACATTGACTGGTCATTCCTCGACAACCTCGACGCGGTTGACTACGCTCCAGACACTTCTAATCTCTTCCCACTTTACAACGACGACTTTGATAACATATTAACCAGTGATTTTTACCAATCCTCGAATGACCATTACGACGATGAAGACAGCATCGCCGCCGCCGGTCAATCGTTTCTCTGGAACTTTTAA

mRNA sequence

ATGAACAACAATAATAATCCACCAGAGCTCAGCCAGACCTCCGCCGCCTCCGCCGCCGGTGACACCAAATACAAAGGTGTACGACGACGGAAATGGGGTAAATGGGTAGCGGAAATCCGCCTCCCCAACAGCCGCGACAGAATATGGCTCGGTTCCTACGACTCGCCGGAGAAAGCTGCCCGTGCTTTTGACGCTGCCCTCTTTTGCCTACGTGGCCGACAAGCTAAGTTCAACTTCCCCAACCAACCACTGCCCGACATTCTCGACGCTCACTCTCTCACTGCCCATGAAATCCAACAGCTGGCAGCTAAATTCGCTAATGATTATCAACACTCCTCCAGTAGTGCTGACCAAAACAACGCCGACGTTGACCGTCTCCAAGCTCCTCCCGCCACCTCCGACCAAAACATTGACTGGTCATTCCTCGACAACCTCGACGCGGTTGACTACGCTCCAGACACTTCTAATCTCTTCCCACTTTACAACGACGACTTTGATAACATATTAACCAGTGATTTTTACCAATCCTCGAATGACCATTACGACGATGAAGACAGCATCGCCGCCGCCGGTCAATCGTTTCTCTGGAACTTTTAA

Coding sequence (CDS)

ATGAACAACAATAATAATCCACCAGAGCTCAGCCAGACCTCCGCCGCCTCCGCCGCCGGTGACACCAAATACAAAGGTGTACGACGACGGAAATGGGGTAAATGGGTAGCGGAAATCCGCCTCCCCAACAGCCGCGACAGAATATGGCTCGGTTCCTACGACTCGCCGGAGAAAGCTGCCCGTGCTTTTGACGCTGCCCTCTTTTGCCTACGTGGCCGACAAGCTAAGTTCAACTTCCCCAACCAACCACTGCCCGACATTCTCGACGCTCACTCTCTCACTGCCCATGAAATCCAACAGCTGGCAGCTAAATTCGCTAATGATTATCAACACTCCTCCAGTAGTGCTGACCAAAACAACGCCGACGTTGACCGTCTCCAAGCTCCTCCCGCCACCTCCGACCAAAACATTGACTGGTCATTCCTCGACAACCTCGACGCGGTTGACTACGCTCCAGACACTTCTAATCTCTTCCCACTTTACAACGACGACTTTGATAACATATTAACCAGTGATTTTTACCAATCCTCGAATGACCATTACGACGATGAAGACAGCATCGCCGCCGCCGGTCAATCGTTTCTCTGGAACTTTTAA

Homology

[Close]

BLAST of CmoCh05G010240 vs. Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-35
Identity = 88/189 (46.56%), Postives = 119/189 (62.96%), Query Frame = 1


Query: 16  ASAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLRGRQA 75
           +S++  +KYKGVR+RKWGKWV+EIRLPNSR+RIWLGSYD+PEKAARAFDAAL+CLRG  A
Sbjct: 4   SSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNA 63

Query: 76  KFNFPNQPLPDILDAHSLTAHEIQQLAAKFANDYQHSSSSADQNNADVDRLQAPPATSDQ 135
           KFNFP+ P P I    +L+  EI++ AA+FAN     S+  D +      ++   A++  
Sbjct: 64  KFNFPDNP-PVISGGRNLSRSEIREAAARFAN-----SAEDDSSGGAGYEIRQESASTSM 123

Query: 136 NIDWSFLDNLDAVDYAPDTS--NLFPLYNDDFDNILTSDFYQS----SNDHYDDEDSIAA 195
           ++D  FL  L  V      S   LFP + DDF +  + D ++     + D+Y   +   A
Sbjct: 124 DVDSEFLSMLPTVGSGNFASEFGLFPGF-DDFSDEYSGDRFREQLSPTQDYYQLGEETYA 183

Query: 196 AGQSFLWNF 199
            G  FLWNF
Sbjct: 184 DGSMFLWNF 185

[Close]

BLAST of CmoCh05G010240 vs. Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.1e-32
Identity = 81/164 (49.39%), Postives = 102/164 (62.20%), Query Frame = 1


Query: 17  SAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLRGRQAK 76
           + A  +KYKGVR+RKWGKWV+EIRLP+SR+RIWLGSYD+PEKAARAFDAA FCLRG  A 
Sbjct: 14  NTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDAN 73

Query: 77  FNFPNQPLPDILDAHSLTAHEIQQLAAKFANDYQHSSSSADQN--------NADVDRLQA 136
           FNFPN P P I    SLT  EIQ+ AA+FAN +Q      +++          +     A
Sbjct: 74  FNFPNNP-PSISVEKSLTPPEIQEAAARFANTFQDIVKGEEESGLVPGSEIRPESPSTSA 133

Query: 137 PPATSDQNIDWSFLDNLDAVDYAPDTSNLFPLYNDDFDNILTSD 173
             ATS  + D+SFLD L  +++       F  ++DDF      D
Sbjct: 134 SVATSTVDYDFSFLDLL-PMNFG------FDSFSDDFSGFSGGD 169

[Close]

BLAST of CmoCh05G010240 vs. Swiss-Prot
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.3e-29
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 23  KYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLRGRQAKFNFPNQ 82
           KY GVR+RKWGKWVAEIRLPNSRDRIWLGS+DS EKAARAFDAAL+CLRG  A+FNFP+ 
Sbjct: 6   KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDN 65

Query: 83  PLPDILDAHSLTAHEIQQLAAKFA 107
           P P+I    SLT  +IQ +A++FA
Sbjct: 66  P-PEIPGGRSLTPQQIQVVASRFA 88

[Close]

BLAST of CmoCh05G010240 vs. Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-22
Identity = 60/153 (39.22%), Postives = 87/153 (56.86%), Query Frame = 1


Query: 24  YKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLRGRQAKFNFPNQP 83
           Y+GVR+R WGKWV+EIR+P +  RIWLGSYD+PEKAARA+DAALFC+RG +  +NFP   
Sbjct: 27  YRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTDK 86

Query: 84  LPDILD--AHSLTAHEIQQLAAKFANDYQHSSSSADQNNADVDRLQAPPATSDQNIDWSF 143
            P + +     L+  +IQ +A  +A+   H  S A    A        PA+SD +     
Sbjct: 87  KPQLPEGSVRPLSKLDIQTIATNYASSVVHVPSHATTLPATTQVPSEVPASSDVSASTEI 146

Query: 144 LDNLDAVDYAPDTS--NLFPLYNDDFDNILTSD 173
            + +D      D +  ++F + +   D+ L  D
Sbjct: 147 TEMVDEYYLPTDATAESIFSVEDLQLDSFLMMD 179

[Close]

BLAST of CmoCh05G010240 vs. Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-20
Identity = 69/180 (38.33%), Postives = 100/180 (55.56%), Query Frame = 1


Query: 5   NNPPELSQTSAASAAGDT-----------KYKGVRRRKWGKWVAEIRLPNSRDRIWLGSY 64
           ++ P  S +S++S++  +           KYKGVR R WG WV+EIR PN + RIWLGSY
Sbjct: 20  SSSPSSSSSSSSSSSSSSCKNKNKKSKIKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSY 79

Query: 65  DSPEKAARAFDAALFCLRGRQAKFNFPNQP-----LPDILDAHS-LTAHEIQQLAAKFAN 124
            + E AARA+D AL CL+G QA  NFP        L ++LD ++ L+   IQ++AA+ AN
Sbjct: 80  STAEAAARAYDVALLCLKGPQANLNFPTSSSSHHLLDNLLDENTLLSPKSIQRVAAQAAN 139

Query: 125 DYQH--SSSSADQNNADVDRLQAPPATSDQNIDWSFLDNLDAVDYAPDTSNLFPLYNDDF 166
            + H   +SSA  + +D D          Q++  SF+DN   V     TS+ +  +N  F
Sbjct: 140 SFNHFAPTSSAVSSPSDHDHHH---DDGMQSLMGSFVDN--HVSLMDSTSSWYDDHNGMF 194

[Close]

BLAST of CmoCh05G010240 vs. TrEMBL
Match: A0A0A0KIJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361330 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 8.1e-59
Identity = 135/227 (59.47%), Postives = 153/227 (67.40%), Query Frame = 1


Query: 1   MNNNNNPPELSQTSAASAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAA 60
           MNNN     +SQTSAA   GDTKY+GVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAA
Sbjct: 1   MNNN-----ISQTSAA---GDTKYRGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAA 60

Query: 61  RAFDAALFCLRGRQAKFNFPNQPLPDILDAHSLTAHEIQQLAAKFANDYQHSSSSADQNN 120
           RAFDAALFCLRG  AKFNFP+QPLPDIL+AHSLTAH+IQ+ AAKFAN+Y+         N
Sbjct: 61  RAFDAALFCLRGPHAKFNFPDQPLPDILNAHSLTAHQIQEFAAKFANEYEC------HQN 120

Query: 121 ADVDRLQAPPATSD--------------QNIDWSFLDNLDAVDY-------APDTSNLFP 180
            DV  +  PP T+                N+DWSFLD +    Y       +  +SN FP
Sbjct: 121 DDVVDVAPPPTTTTAEEKCGISPSSSNYNNMDWSFLDEIHDHHYPNPNPHSSSSSSNFFP 180

Query: 181 LYNDDFDNILTSDFYQSS-----NDHYD---DEDSIAAAGQSFLWNF 199
           LYND FDNILT+DFYQSS     +D YD    +D    + Q FLWNF
Sbjct: 181 LYNDHFDNILTNDFYQSSTTNNNDDLYDAVSGDDDDTFSNQPFLWNF 213

[Close]

BLAST of CmoCh05G010240 vs. TrEMBL
Match: B9IKF6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s08320g PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.1e-37
Identity = 99/205 (48.29%), Postives = 128/205 (62.44%), Query Frame = 1


Query: 8   PELSQTSAASAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAAL 67
           P  S    +    + KYKGVR+RKWGKWV+EIRLPNSR+RIWLGSYD+P KAARAFDAAL
Sbjct: 4   PSSSSGQQSDRNHEPKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPLKAARAFDAAL 63

Query: 68  FCLRGRQAKFNFPNQPLPDILDAHSLTAHEIQQLAAKFANDYQHSSSSA----DQNNADV 127
           +CLRG  AKFNFP+ P PDI+   SL++ EIQ++AA+FAN+   SSS+A       + + 
Sbjct: 64  YCLRGSGAKFNFPDNP-PDIVGGQSLSSQEIQEVAARFANEEPTSSSTATRGESSEHVEN 123

Query: 128 DRLQAPPATSDQNIDWSFLDNLDAVDYAPDTSNLFPLYNDDFDNILTSDFYQ-------- 187
           D   +    +   IDWSFL+ LD+ + A D    F LY+   D+ +  D+Y         
Sbjct: 124 DTSSSSDGGAGDTIDWSFLNLLDSSEGASD----FGLYH-GLDH-MGGDYYPPPPPPSEY 183

Query: 188 --SSNDHYDDEDSIAAAGQSFLWNF 199
               +DH  DE   A + QSFLWNF
Sbjct: 184 SIGGDDHNGDE---AYSQQSFLWNF 198

[Close]

BLAST of CmoCh05G010240 vs. TrEMBL
Match: V4UPI9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010348mg PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.7e-35
Identity = 98/209 (46.89%), Postives = 127/209 (60.77%), Query Frame = 1


Query: 12  QTSAASAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLR 71
           ++S++++  + KYKGVR+RKWGKWV+EIRLPNSR+RIWLGSY++PEKAARAFDAALFCLR
Sbjct: 13  RSSSSASRSEPKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYETPEKAARAFDAALFCLR 72

Query: 72  GRQAKFNFPNQPLPDILD----------AHSLTAHEIQQLAAKFANDY-------QHSSS 131
           GR AKFNFP  P P  LD          A SLT  EIQ +AA+FAN+         H++S
Sbjct: 73  GRDAKFNFPENP-PSELDVTGPGPEGARARSLTPQEIQVIAARFANEEPPRSSVDHHANS 132

Query: 132 SADQNNADVDRLQ----APPATSDQNIDWSFLDNLDAVDYAPDTSNLFPLYNDDFDNILT 191
           S + NN +         A    SD  IDWS  D LD+ + A D    +   +   D +  
Sbjct: 133 SNNNNNNNCTSSSSDGGAVHLDSDSTIDWSLWDMLDSNEGASD-FGFYSGMDHMSDELYP 192

Query: 192 SDFYQSSNDHYDDEDSIA-AAGQSFLWNF 199
           S   + + D  ++ED  A +   SFLWNF
Sbjct: 193 SATAEPTIDDINEEDQNAFSQTSSFLWNF 219

[Close]

BLAST of CmoCh05G010240 vs. TrEMBL
Match: A9PLA3_POPTR (RAP2-like protein OS=Populus trichocarpa GN=RAP2L13 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.8e-35
Identity = 95/206 (46.12%), Postives = 130/206 (63.11%), Query Frame = 1


Query: 10  LSQTSAASAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFC 69
           +S    +    + KYKGVR+RKWGKWV+EIRLPNSR+RIWLGSYD+PEKAARAFDAAL+C
Sbjct: 11  VSSEQQSDRTHEPKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYC 70

Query: 70  LRGRQAKFNFPNQPLPDILDAHSLTAHEIQQLAAKFANDYQHSSSS-ADQNNADVDRLQA 129
           LRG  AKFNFP+ P PDI+   SLT  E+Q++AA+FAN+   SS++   ++++ V+   +
Sbjct: 71  LRGSGAKFNFPDNP-PDIVGGRSLTPQEVQEVAARFANEEPTSSTAMGGESSSHVENYTS 130

Query: 130 PPA------TSDQNIDWSFLDNLDAVDYAPDTSNLFPLYNDDFDNILTSDFY-------- 189
             +           IDWSFL+ LD+ + A D    F LY+   D+ +  D+Y        
Sbjct: 131 SSSDCGAGQMDSDTIDWSFLNLLDSNEGASD----FGLYH-GLDH-MGGDYYPPPTPPPP 190

Query: 190 --QSSNDHYDDEDSIAAAGQSFLWNF 199
              + +D+  DE     + QSFLWNF
Sbjct: 191 PDYNGDDNNGDE---TFSHQSFLWNF 206

[Close]

BLAST of CmoCh05G010240 vs. TrEMBL
Match: A0A067KCS8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07518 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-34
Identity = 99/200 (49.50%), Postives = 117/200 (58.50%), Query Frame = 1


Query: 13  TSAASAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLRG 72
           T   +   D+KYKGVR+RKWGKWV+EIRLPNSR+RIWLGSYDS EKAARAFDAALFCLRG
Sbjct: 6   TDKPADRSDSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRG 65

Query: 73  RQAKFNFPNQPLPDILDAHSLTAHEIQQLAAKFANDY----QHSSSSADQNNAD------ 132
           R AKFNFP+ P P+I    SL+  EIQ  AA+FAN Y    Q  +SS DQ+  +      
Sbjct: 66  RTAKFNFPDNP-PEIAGGRSLSPPEIQAAAARFANSYPSRKQLENSSTDQSVTELQAESP 125

Query: 133 ----VDRLQAPPATSDQNIDWSFLDNLDAVDYAPDTSNLFPLYNDDFDNILTSDFYQSSN 192
               V  L A    S+  +D  FLD L   DY      +FP + DD  N   S       
Sbjct: 126 CPSVVSDLTAQIDGSELMMDIPFLDLLANTDY-----GIFPGF-DDLHNDFFSPLTGPGP 185

Query: 193 DHYDDEDSIAAAGQSFLWNF 199
           D  ++      A  SFLWNF
Sbjct: 186 DLVEENLDGVVAQDSFLWNF 198

[Close]

BLAST of CmoCh05G010240 vs. TAIR10
Match: AT1G19210.1 (AT1G19210.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 151.4 bits (381), Expect = 6.0e-37
Identity = 88/189 (46.56%), Postives = 119/189 (62.96%), Query Frame = 1


Query: 16  ASAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLRGRQA 75
           +S++  +KYKGVR+RKWGKWV+EIRLPNSR+RIWLGSYD+PEKAARAFDAAL+CLRG  A
Sbjct: 4   SSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNA 63

Query: 76  KFNFPNQPLPDILDAHSLTAHEIQQLAAKFANDYQHSSSSADQNNADVDRLQAPPATSDQ 135
           KFNFP+ P P I    +L+  EI++ AA+FAN     S+  D +      ++   A++  
Sbjct: 64  KFNFPDNP-PVISGGRNLSRSEIREAAARFAN-----SAEDDSSGGAGYEIRQESASTSM 123

Query: 136 NIDWSFLDNLDAVDYAPDTS--NLFPLYNDDFDNILTSDFYQS----SNDHYDDEDSIAA 195
           ++D  FL  L  V      S   LFP + DDF +  + D ++     + D+Y   +   A
Sbjct: 124 DVDSEFLSMLPTVGSGNFASEFGLFPGF-DDFSDEYSGDRFREQLSPTQDYYQLGEETYA 183

Query: 196 AGQSFLWNF 199
            G  FLWNF
Sbjct: 184 DGSMFLWNF 185

[Close]

BLAST of CmoCh05G010240 vs. TAIR10
Match: AT1G74930.1 (AT1G74930.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 138.7 bits (348), Expect = 4.0e-33
Identity = 81/164 (49.39%), Postives = 102/164 (62.20%), Query Frame = 1


Query: 17  SAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLRGRQAK 76
           + A  +KYKGVR+RKWGKWV+EIRLP+SR+RIWLGSYD+PEKAARAFDAA FCLRG  A 
Sbjct: 14  NTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDAN 73

Query: 77  FNFPNQPLPDILDAHSLTAHEIQQLAAKFANDYQHSSSSADQN--------NADVDRLQA 136
           FNFPN P P I    SLT  EIQ+ AA+FAN +Q      +++          +     A
Sbjct: 74  FNFPNNP-PSISVEKSLTPPEIQEAAARFANTFQDIVKGEEESGLVPGSEIRPESPSTSA 133

Query: 137 PPATSDQNIDWSFLDNLDAVDYAPDTSNLFPLYNDDFDNILTSD 173
             ATS  + D+SFLD L  +++       F  ++DDF      D
Sbjct: 134 SVATSTVDYDFSFLDLL-PMNFG------FDSFSDDFSGFSGGD 169

[Close]

BLAST of CmoCh05G010240 vs. TAIR10
Match: AT5G21960.1 (AT5G21960.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-30
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 23  KYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLRGRQAKFNFPNQ 82
           KY GVR+RKWGKWVAEIRLPNSRDRIWLGS+DS EKAARAFDAAL+CLRG  A+FNFP+ 
Sbjct: 6   KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDN 65

Query: 83  PLPDILDAHSLTAHEIQQLAAKFA 107
           P P+I    SLT  +IQ +A++FA
Sbjct: 66  P-PEIPGGRSLTPQQIQVVASRFA 88

[Close]

BLAST of CmoCh05G010240 vs. TAIR10
Match: AT4G31060.1 (AT4G31060.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 5.8e-24
Identity = 60/153 (39.22%), Postives = 87/153 (56.86%), Query Frame = 1


Query: 24  YKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLRGRQAKFNFPNQP 83
           Y+GVR+R WGKWV+EIR+P +  RIWLGSYD+PEKAARA+DAALFC+RG +  +NFP   
Sbjct: 27  YRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTDK 86

Query: 84  LPDILD--AHSLTAHEIQQLAAKFANDYQHSSSSADQNNADVDRLQAPPATSDQNIDWSF 143
            P + +     L+  +IQ +A  +A+   H  S A    A        PA+SD +     
Sbjct: 87  KPQLPEGSVRPLSKLDIQTIATNYASSVVHVPSHATTLPATTQVPSEVPASSDVSASTEI 146

Query: 144 LDNLDAVDYAPDTS--NLFPLYNDDFDNILTSD 173
            + +D      D +  ++F + +   D+ L  D
Sbjct: 147 TEMVDEYYLPTDATAESIFSVEDLQLDSFLMMD 179

[Close]

BLAST of CmoCh05G010240 vs. TAIR10
Match: AT1G21910.1 (AT1G21910.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 7.1e-22
Identity = 69/180 (38.33%), Postives = 100/180 (55.56%), Query Frame = 1


Query: 5   NNPPELSQTSAASAAGDT-----------KYKGVRRRKWGKWVAEIRLPNSRDRIWLGSY 64
           ++ P  S +S++S++  +           KYKGVR R WG WV+EIR PN + RIWLGSY
Sbjct: 20  SSSPSSSSSSSSSSSSSSCKNKNKKSKIKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSY 79

Query: 65  DSPEKAARAFDAALFCLRGRQAKFNFPNQP-----LPDILDAHS-LTAHEIQQLAAKFAN 124
            + E AARA+D AL CL+G QA  NFP        L ++LD ++ L+   IQ++AA+ AN
Sbjct: 80  STAEAAARAYDVALLCLKGPQANLNFPTSSSSHHLLDNLLDENTLLSPKSIQRVAAQAAN 139

Query: 125 DYQH--SSSSADQNNADVDRLQAPPATSDQNIDWSFLDNLDAVDYAPDTSNLFPLYNDDF 166
            + H   +SSA  + +D D          Q++  SF+DN   V     TS+ +  +N  F
Sbjct: 140 SFNHFAPTSSAVSSPSDHDHHH---DDGMQSLMGSFVDN--HVSLMDSTSSWYDDHNGMF 194

[Close]

BLAST of CmoCh05G010240 vs. NCBI nr
Match: gi|659133674|ref|XP_008466852.1| (PREDICTED: ethylene-responsive transcription factor ERF017-like [Cucumis melo])

HSP 1 Score: 235.7 bits (600), Expect = 6.8e-59
Identity = 136/220 (61.82%), Postives = 155/220 (70.45%), Query Frame = 1


Query: 1   MNNNNNPPELSQTSAASAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAA 60
           MNNN     LSQTSAA   GDTKY+GVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAA
Sbjct: 1   MNNN-----LSQTSAA---GDTKYRGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAA 60

Query: 61  RAFDAALFCLRGRQAKFNFPNQPLPDILDAHSLTAHEIQQLAAKFANDYQ-HSSSSADQ- 120
           RAFDAALFCLRG  AKFNFP QPLPDIL+AHSLTAH+IQ+ AAKFAN+Y  H +   D  
Sbjct: 61  RAFDAALFCLRGPHAKFNFPEQPLPDILNAHSLTAHQIQEFAAKFANEYDCHQNDVVDDV 120

Query: 121 ----------NNADVDRLQAPPATSDQNIDWSFLDNL-DAVDYAP-DTSNLFPLYNDDFD 180
                       A+ +   +P +++  N+DWSFLD + D  +  P  +SN FPLYND FD
Sbjct: 121 APPPTTTTTTTTAEDNCGNSPSSSNYNNVDWSFLDEIHDHHNPNPHSSSNFFPLYNDHFD 180

Query: 181 NILTSDFYQSS-----NDHYD---DEDSIAAAGQSFLWNF 199
           NILT+DFYQSS     ND YD    +D    + Q FLWNF
Sbjct: 181 NILTNDFYQSSTTNNTNDLYDAVSGDDDDTFSNQPFLWNF 212

[Close]

BLAST of CmoCh05G010240 vs. NCBI nr
Match: gi|449453065|ref|XP_004144279.1| (PREDICTED: ethylene-responsive transcription factor ERF017 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 1.2e-58
Identity = 135/227 (59.47%), Postives = 153/227 (67.40%), Query Frame = 1


Query: 1   MNNNNNPPELSQTSAASAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAA 60
           MNNN     +SQTSAA   GDTKY+GVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAA
Sbjct: 1   MNNN-----ISQTSAA---GDTKYRGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAA 60

Query: 61  RAFDAALFCLRGRQAKFNFPNQPLPDILDAHSLTAHEIQQLAAKFANDYQHSSSSADQNN 120
           RAFDAALFCLRG  AKFNFP+QPLPDIL+AHSLTAH+IQ+ AAKFAN+Y+         N
Sbjct: 61  RAFDAALFCLRGPHAKFNFPDQPLPDILNAHSLTAHQIQEFAAKFANEYEC------HQN 120

Query: 121 ADVDRLQAPPATSD--------------QNIDWSFLDNLDAVDY-------APDTSNLFP 180
            DV  +  PP T+                N+DWSFLD +    Y       +  +SN FP
Sbjct: 121 DDVVDVAPPPTTTTAEEKCGISPSSSNYNNMDWSFLDEIHDHHYPNPNPHSSSSSSNFFP 180

Query: 181 LYNDDFDNILTSDFYQSS-----NDHYD---DEDSIAAAGQSFLWNF 199
           LYND FDNILT+DFYQSS     +D YD    +D    + Q FLWNF
Sbjct: 181 LYNDHFDNILTNDFYQSSTTNNNDDLYDAVSGDDDDTFSNQPFLWNF 213

[Close]

BLAST of CmoCh05G010240 vs. NCBI nr
Match: gi|224142933|ref|XP_002324785.1| (hypothetical protein POPTR_0018s08320g [Populus trichocarpa])

HSP 1 Score: 162.5 bits (410), Expect = 7.3e-37
Identity = 99/205 (48.29%), Postives = 128/205 (62.44%), Query Frame = 1


Query: 8   PELSQTSAASAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAAL 67
           P  S    +    + KYKGVR+RKWGKWV+EIRLPNSR+RIWLGSYD+P KAARAFDAAL
Sbjct: 4   PSSSSGQQSDRNHEPKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPLKAARAFDAAL 63

Query: 68  FCLRGRQAKFNFPNQPLPDILDAHSLTAHEIQQLAAKFANDYQHSSSSA----DQNNADV 127
           +CLRG  AKFNFP+ P PDI+   SL++ EIQ++AA+FAN+   SSS+A       + + 
Sbjct: 64  YCLRGSGAKFNFPDNP-PDIVGGQSLSSQEIQEVAARFANEEPTSSSTATRGESSEHVEN 123

Query: 128 DRLQAPPATSDQNIDWSFLDNLDAVDYAPDTSNLFPLYNDDFDNILTSDFYQ-------- 187
           D   +    +   IDWSFL+ LD+ + A D    F LY+   D+ +  D+Y         
Sbjct: 124 DTSSSSDGGAGDTIDWSFLNLLDSSEGASD----FGLYH-GLDH-MGGDYYPPPPPPSEY 183

Query: 188 --SSNDHYDDEDSIAAAGQSFLWNF 199
               +DH  DE   A + QSFLWNF
Sbjct: 184 SIGGDDHNGDE---AYSQQSFLWNF 198

[Close]

BLAST of CmoCh05G010240 vs. NCBI nr
Match: gi|743917669|ref|XP_011002827.1| (PREDICTED: ethylene-responsive transcription factor ERF017-like [Populus euphratica])

HSP 1 Score: 162.2 bits (409), Expect = 9.6e-37
Identity = 99/205 (48.29%), Postives = 127/205 (61.95%), Query Frame = 1


Query: 8   PELSQTSAASAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAAL 67
           P  S    +    + KYKGVR+RKWGKWV+EIRLPNSR RIWLGSYD+P+KAARAFDAA 
Sbjct: 4   PSSSSGQQSDRNHEPKYKGVRKRKWGKWVSEIRLPNSRKRIWLGSYDTPQKAARAFDAAS 63

Query: 68  FCLRGRQAKFNFPNQPLPDILDAHSLTAHEIQQLAAKFANDYQHSSSSA----DQNNADV 127
           +CLRG  AKFNFP+ P PDI+   SL++ EIQ++AA+FAN+   SSS A       + + 
Sbjct: 64  YCLRGSGAKFNFPDNP-PDIVGGQSLSSQEIQEVAARFANEEPTSSSIAMRGESSEHVEN 123

Query: 128 DRLQAPPATSDQNIDWSFLDNLDAVDYAPDTSNLFPLYNDDFDNILTSDFYQ-------- 187
           D   +  A +   IDWSFL+ LD+ + A D    F LY+   D+ +  D+Y         
Sbjct: 124 DTSSSSDAGAGDTIDWSFLNLLDSSEGASD----FGLYH-GLDH-MGGDYYAPPPPPSEY 183

Query: 188 --SSNDHYDDEDSIAAAGQSFLWNF 199
               +DH  DE   A + QSFLWNF
Sbjct: 184 SIGGDDHNGDE---ACSQQSFLWNF 198

[Close]

BLAST of CmoCh05G010240 vs. NCBI nr
Match: gi|568841162|ref|XP_006474529.1| (PREDICTED: ethylene-responsive transcription factor ERF017 [Citrus sinensis])

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 99/212 (46.70%), Postives = 130/212 (61.32%), Query Frame = 1


Query: 12  QTSAASAAGDTKYKGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLR 71
           ++S+++++ + KYKGVR+RKWGKWV+EIRLPNSR+RIWLGSY++PEKAARAFDAALFCLR
Sbjct: 15  RSSSSASSSEPKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYETPEKAARAFDAALFCLR 74

Query: 72  GRQAKFNFPNQPLPDILD----------AHSLTAHEIQQLAAKFAND------YQHSSSS 131
           GR AKFNFP  P P  LD          A SLT  EIQ +AA+FAN+        H++SS
Sbjct: 75  GRDAKFNFPENP-PSELDVTVPGPEGARARSLTPQEIQAIAARFANEEPPRSSVDHANSS 134

Query: 132 ADQNNADVDRL--------QAPPATSDQNIDWSFLDNLDAVDYAPDTSNLFPLYNDDFDN 191
            + NN + +           A    SD  IDWSF D LD+ + A D    +   +   D 
Sbjct: 135 NNNNNNNNNNNCTSSSSDGGAVHVDSDSTIDWSFWDMLDSNEGASD-FGFYSGMDHMSDE 194

Query: 192 ILTSDFYQSSNDHYDDEDSIA-AAGQSFLWNF 199
           +  S   + + D  ++ED  A +   SFLWNF
Sbjct: 195 LYPSATAEPTIDDINEEDQNAFSQTSSFLWNF 224

The following BLAST results are available for this feature:

BLAST of CmoCh05G010240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERF17_ARATH	1.1e-35	46.56	Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF01...	[more]
ERF18_ARATH	7.1e-32	49.39	Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF01...	[more]
ERF16_ARATH	4.3e-29	72.62	Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF01...	[more]
ERF15_ARATH	1.0e-22	39.22	Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF01...	[more]
ERF12_ARATH	1.3e-20	38.33	Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF01...	[more]

BLAST of CmoCh05G010240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIJ3_CUCSA	8.1e-59	59.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361330 PE=4 SV=1	[more]
B9IKF6_POPTR	5.1e-37	48.29	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s08320g PE=4 SV=1	[more]
V4UPI9_9ROSI	3.7e-35	46.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010348mg PE=4 SV=1	[more]
A9PLA3_POPTR	4.8e-35	46.12	RAP2-like protein OS=Populus trichocarpa GN=RAP2L13 PE=4 SV=1	[more]
A0A067KCS8_JATCU	1.1e-34	49.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07518 PE=4 SV=1	[more]

BLAST of CmoCh05G010240 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19210.1	6.0e-37	46.56	Integrase-type DNA-binding superfamily protein	[more]
AT1G74930.1	4.0e-33	49.39	Integrase-type DNA-binding superfamily protein	[more]
AT5G21960.1	2.4e-30	72.62	Integrase-type DNA-binding superfamily protein	[more]
AT4G31060.1	5.8e-24	39.22	Integrase-type DNA-binding superfamily protein	[more]
AT1G21910.1	7.1e-22	38.33	Integrase-type DNA-binding superfamily protein	[more]

BLAST of CmoCh05G010240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133674\|ref\|XP_008466852.1\|	6.8e-59	61.82	PREDICTED: ethylene-responsive transcription factor ERF017-like [Cucumis melo]	[more]
gi\|449453065\|ref\|XP_004144279.1\|	1.2e-58	59.47	PREDICTED: ethylene-responsive transcription factor ERF017 [Cucumis sativus]	[more]
gi\|224142933\|ref\|XP_002324785.1\|	7.3e-37	48.29	hypothetical protein POPTR_0018s08320g [Populus trichocarpa]	[more]
gi\|743917669\|ref\|XP_011002827.1\|	9.6e-37	48.29	PREDICTED: ethylene-responsive transcription factor ERF017-like [Populus euphrat...	[more]
gi\|568841162\|ref\|XP_006474529.1\|	1.1e-35	46.70	PREDICTED: ethylene-responsive transcription factor ERF017 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0051301	cell division
biological_process	GO:0002213	defense response to insect
biological_process	GO:0010087	phloem or xylem histogenesis
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G010240.1	CmoCh05G010240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 24..35 score: 6.0E-9coord: 46..62 score: 6.
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 23..81 score: 3.7
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 22..72 score: 4.2
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 23..86 score: 7.6
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 23..80 score: 22
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 23..81 score: 3.6
None	No IPR available	PANTHER	PTHR31985	FAMILY NOT NAMED	coord: 21..198 score: 1.5
None	No IPR available	PANTHER	PTHR31985:SF34	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018	coord: 21..198 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G010240	Cucsa.055920	Cucumber (Gy14) v1	cgycmoB0070
CmoCh05G010240	CmaCh05G010070	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G010240	Cla021957	Watermelon (97103) v1	cmowmB747
CmoCh05G010240	Csa6G361330	Cucumber (Chinese Long) v2	cmocuB797
CmoCh05G010240	ClCG08G009710	Watermelon (Charleston Gray)	cmowcgB714
CmoCh05G010240	CSPI06G18940	Wild cucumber (PI 183967)	cmocpiB801
CmoCh05G010240	Lsi08G008230	Bottle gourd (USVL1VR-Ls)	cmolsiB729
CmoCh05G010240	CsaV3_6G031820	Cucumber (Chinese Long) v3	cmocucB0938
CmoCh05G010240	Cla97C08G152510	Watermelon (97103) v2	cmowmbB801
CmoCh05G010240	Bhi04G001206	Wax gourd	cmowgoB0949
CmoCh05G010240	CsGy6G018380	Cucumber (Gy14) v2	cgybcmoB826
CmoCh05G010240	Carg27030	Silver-seed gourd	carcmoB0265

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G010240	Melon (DHL92) v3.5.1	cmomeB717
CmoCh05G010240	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G010240	Melon (DHL92) v3.6.1	cmomedB814