CmoCh05G007320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G007320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr05 : 3841538 .. 3841867 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCTGAATCAGCTACTCAATTTGCGTGGGGCAATGCTCTAAAGAAGAAGCTTCTTCAAACAAAAGTTGCCAATGGTTTTGATTTCTCTCTCCAAACACTGAAATTTTCTCGAGAAAATTTAGAAAGAGAAGAAGAAGAGGAAGAGAAGATGGAAAATGGGTTGAAAAGGCTGAGGAAGATCATACCAGGCGGCGGCGGCGGTGGTGGTTTTAATGGAGGTTTGGAAGAGGAAGAATTGTTGAAACAAACTGAAAGTTACATAAAATGTCTTGAGTTGCAGGTGAATGTTCTTAGATGTTTGGTTGAAACAAACACAATTTGA

mRNA sequence

ATGGCAATGGCTGAATCAGCTACTCAATTTGCGTGGGGCAATGCTCTAAAGAAGAAGCTTCTTCAAACAAAAGTTGCCAATGGTTTTGATTTCTCTCTCCAAACACTGAAATTTTCTCGAGAAAATTTAGAAAGAGAAGAAGAAGAGGAAGAGAAGATGGAAAATGGGTTGAAAAGGCTGAGGAAGATCATACCAGGCGGCGGCGGCGGTGGTGGTTTTAATGGAGGTTTGGAAGAGGAAGAATTGTTGAAACAAACTGAAAGTTACATAAAATGTCTTGAGTTGCAGGTGAATGTTCTTAGATGTTTGGTTGAAACAAACACAATTTGA

Coding sequence (CDS)

ATGGCAATGGCTGAATCAGCTACTCAATTTGCGTGGGGCAATGCTCTAAAGAAGAAGCTTCTTCAAACAAAAGTTGCCAATGGTTTTGATTTCTCTCTCCAAACACTGAAATTTTCTCGAGAAAATTTAGAAAGAGAAGAAGAAGAGGAAGAGAAGATGGAAAATGGGTTGAAAAGGCTGAGGAAGATCATACCAGGCGGCGGCGGCGGTGGTGGTTTTAATGGAGGTTTGGAAGAGGAAGAATTGTTGAAACAAACTGAAAGTTACATAAAATGTCTTGAGTTGCAGGTGAATGTTCTTAGATGTTTGGTTGAAACAAACACAATTTGA

Homology

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BLAST of CmoCh05G007320 vs. TrEMBL
Match: A0A0A0LJA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G060350 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 79/128 (61.72%), Postives = 92/128 (71.88%), Query Frame = 1


Query: 1   MAMAESATQFAWGNALKKKLLQTKVA-------NGFDFSLQTLK-FSRENL--------- 60
           MAMA+SA++F+WG ALKKKLLQ           NGFDFS+QT+K  S+ENL         
Sbjct: 59  MAMAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHH 118

Query: 61  EREEEEEEKMENGLKRLRKIIPGGGG---GGGFNGGLEEEELLKQTESYIKCLELQVNVL 109
           E EEEEEE+MENGL +LRKIIPGG     GG  +   EE++LLKQTESY+KCLELQVNVL
Sbjct: 119 EEEEEEEEEMENGLMKLRKIIPGGDNFSIGGNLD---EEDDLLKQTESYVKCLELQVNVL 178

[Close]

BLAST of CmoCh05G007320 vs. TrEMBL
Match: A0A087HDS3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G353700 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 1


Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 60
           MA+A SA +FAW   L+ KLL +   +   FS + ++ S    + EEEE  +++N LK L
Sbjct: 64  MALALSAQEFAWSRFLQHKLLSSSHEDP-SFSSKVIERSIYKEDSEEEEGVELKNRLKEL 123

Query: 61  RKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETN 108
           +K++PGG         ++ EE+L +  SYI CLELQ+ VL  LV  N
Sbjct: 124 QKLLPGGEQ-------MDMEEMLSEVGSYIVCLELQMIVLNSLVHDN 162

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BLAST of CmoCh05G007320 vs. TrEMBL
Match: V4NUU7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10022885mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 1


Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 60
           MA+A SA +FAWG  L+ KLL     +   +S + L+ S    E EEEE E ++  LK L
Sbjct: 64  MALALSAQEFAWGRFLQHKLLSPTHEDP-SYSSKILERSDYKQEGEEEEAE-IKKRLKEL 123

Query: 61  RKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNT 109
           +K++PGG         +  +E+L +  SYI CLELQ+ VL+ LV+ N+
Sbjct: 124 QKLLPGGEE-------MNMDEMLSEIGSYIVCLELQMIVLKSLVQDNS 162

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BLAST of CmoCh05G007320 vs. TrEMBL
Match: B3H692_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At2g18969 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-06
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 1


Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLER--------------E 60
           MA A SA +FAW   L++KLL +     +D  + T     E LER              E
Sbjct: 64  MAFALSAQEFAWSRFLQQKLLSSP----YDDPISTSSSPSEILERSSKRQGGEKHQDSDE 123

Query: 61  EEEEEKMENGLKRLRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVET 109
           EEE  +++  LK L+K++PGG         +  EE+L +  SYI CLELQ+ VL+ +V+ 
Sbjct: 124 EEEGGEIKKRLKELQKLLPGGEE-------MNMEEILSEIGSYIVCLELQMIVLKSIVQD 174

[Close]

BLAST of CmoCh05G007320 vs. TrEMBL
Match: G7IN04_MEDTR (Transcription factor/transcription regulator OS=Medicago truncatula GN=MTR_2g036670 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-06
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 1


Query: 1   MAMAESATQFAWGNALKKKL------------LQTKVANGFDFSLQTLKFSRENLEREEE 60
           MAM  S+  FAW NALK KL             Q       DFS +    S  N    EE
Sbjct: 61  MAMVFSSQGFAWSNALKTKLQKDGDEGSSRINYQQNEMVPLDFSKKICSKSEANKILVEE 120

Query: 61  -----EEEKMENGLKRLRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCL 104
                E+E +++ L+ LRK+IPGG         + +EE++ + ESY+ CL++QVN+L+CL
Sbjct: 121 NIDGDEDEIVDDQLRCLRKLIPGG------EEIICDEEMVNELESYVSCLQMQVNILQCL 174

[Close]

BLAST of CmoCh05G007320 vs. TAIR10
Match: AT2G18969.1 (AT2G18969.1 BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT4G30180.1))

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-09
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 1


Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLER--------------E 60
           MA A SA +FAW   L++KLL +     +D  + T     E LER              E
Sbjct: 64  MAFALSAQEFAWSRFLQQKLLSSP----YDDPISTSSSPSEILERSSKRQGGEKHQDSDE 123

Query: 61  EEEEEKMENGLKRLRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVET 109
           EEE  +++  LK L+K++PGG         +  EE+L +  SYI CLELQ+ VL+ +V+ 
Sbjct: 124 EEEGGEIKKRLKELQKLLPGGEE-------MNMEEILSEIGSYIVCLELQMIVLKSIVQD 174

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BLAST of CmoCh05G007320 vs. TAIR10
Match: AT2G43060.1 (AT2G43060.1 ILI1 binding bHLH 1)

HSP 1 Score: 50.8 bits (120), Expect = 6.0e-07
Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 1


Query: 1   MAMAESATQFAWGNALKKKLLQ--TKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLK 60
           MA A   +   W  AL ++  +   K+     FS +  K S +   R  +    +E   +
Sbjct: 56  MARAAGGSSRLWSRALLRRADKDDNKIVR---FSRRKWKISSKR-RRSNQRAPVVEEAAE 115

Query: 61  RLRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVE 106
           RLR ++PGGGG       +E  +L+++T  YIKCL +QV V++CLV+
Sbjct: 116 RLRNLVPGGGG-------METSKLMEETAHYIKCLSMQVKVMQCLVD 151

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BLAST of CmoCh05G007320 vs. NCBI nr
Match: gi|778667500|ref|XP_011648935.1| (PREDICTED: uncharacterized protein At4g30180 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-25
Identity = 79/128 (61.72%), Postives = 92/128 (71.88%), Query Frame = 1


Query: 1   MAMAESATQFAWGNALKKKLLQTKVA-------NGFDFSLQTLK-FSRENL--------- 60
           MAMA+SA++F+WG ALKKKLLQ           NGFDFS+QT+K  S+ENL         
Sbjct: 59  MAMAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHH 118

Query: 61  EREEEEEEKMENGLKRLRKIIPGGGG---GGGFNGGLEEEELLKQTESYIKCLELQVNVL 109
           E EEEEEE+MENGL +LRKIIPGG     GG  +   EE++LLKQTESY+KCLELQVNVL
Sbjct: 119 EEEEEEEEEMENGLMKLRKIIPGGDNFSIGGNLD---EEDDLLKQTESYVKCLELQVNVL 178

[Close]

BLAST of CmoCh05G007320 vs. NCBI nr
Match: gi|659069736|ref|XP_008451551.1| (PREDICTED: uncharacterized protein At4g30180 isoform X2 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-25
Identity = 79/129 (61.24%), Postives = 90/129 (69.77%), Query Frame = 1


Query: 1   MAMAESATQFAWGNALKKKLLQTK---------VANGFDFSLQTLK-FSRENL------- 60
           MAMA+SA++F+WG ALKKKLLQ             NGFDFSLQT+K  S +NL       
Sbjct: 59  MAMAQSASEFSWGIALKKKLLQRDDQQEVLGNGSENGFDFSLQTMKKISHKNLGNEEEDH 118

Query: 61  ---EREEEEEEKMENGLKRLRKIIPGGGGGG-GFNGGLEEEELLKQTESYIKCLELQVNV 109
              E EEEEEE+MENGL +LRKIIPGG     G N   EE++LLKQTESY+KCLELQVNV
Sbjct: 119 HEDEEEEEEEEEMENGLMKLRKIIPGGDDFSIGGNNLDEEDDLLKQTESYVKCLELQVNV 178

[Close]

BLAST of CmoCh05G007320 vs. NCBI nr
Match: gi|659069734|ref|XP_008451543.1| (PREDICTED: uncharacterized protein At4g30180 isoform X1 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 6.0e-25
Identity = 79/131 (60.31%), Postives = 90/131 (68.70%), Query Frame = 1


Query: 1   MAMAESATQFAWGNALKKKLLQTK---------VANGFDFSLQTLK-FSRENL------- 60
           MAMA+SA++F+WG ALKKKLLQ             NGFDFSLQT+K  S +NL       
Sbjct: 59  MAMAQSASEFSWGIALKKKLLQRDDQQEVLGNGSENGFDFSLQTMKKISHKNLGNEEEDH 118

Query: 61  -----EREEEEEEKMENGLKRLRKIIPGGGGGG-GFNGGLEEEELLKQTESYIKCLELQV 109
                E EEEEEE+MENGL +LRKIIPGG     G N   EE++LLKQTESY+KCLELQV
Sbjct: 119 HEDEEEEEEEEEEEMENGLMKLRKIIPGGDDFSIGGNNLDEEDDLLKQTESYVKCLELQV 178

[Close]

BLAST of CmoCh05G007320 vs. NCBI nr
Match: gi|1012002547|ref|XP_015935237.1| (PREDICTED: uncharacterized protein At4g30180 [Arachis duranensis])

HSP 1 Score: 72.0 bits (175), Expect = 7.2e-10
Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 1


Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 60
           MAMA SA  FAW + LK KLLQ         + +    S  +L+   +E+EKM++ L  L
Sbjct: 62  MAMAFSAEGFAWSHGLKLKLLQRDEDEAPTITTEKAS-SNPSLKTSSDEDEKMKSELSSL 121

Query: 61  RKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLV 105
           RK+IPGG         + +EE++ + ESYI CLE+QVNVL+CL+
Sbjct: 122 RKLIPGG-------EEIVDEEMVTELESYISCLEMQVNVLQCLL 157

[Close]

BLAST of CmoCh05G007320 vs. NCBI nr
Match: gi|1021473913|ref|XP_016201464.1| (PREDICTED: uncharacterized protein At4g30180 [Arachis ipaensis])

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-09
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1


Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSREN--LEREEEEEEKMENGLK 60
           MAMA SA  FAW + LK KLLQ       D +  T + +  N  L+   +E+EKM++ L 
Sbjct: 62  MAMAFSAQGFAWSHGLKLKLLQRDE----DEAPTTTEKASSNPSLKTSSDEDEKMKSQLS 121

Query: 61  RLRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLV 105
            LRK+IPGG         + +EE++ + ESYI CLE+QVNVL+CL+
Sbjct: 122 SLRKLIPGGEE-------IVDEEMVTELESYISCLEMQVNVLQCLL 156

The following BLAST results are available for this feature:

BLAST of CmoCh05G007320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G007320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJA7_CUCSA	1.1e-25	61.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G060350 PE=4 SV=1	[more]
A0A087HDS3_ARAAL	1.8e-07	40.19	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G353700 PE=4 SV=1	[more]
V4NUU7_EUTSA	1.5e-06	40.74	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10022885mg PE=4 SV=1	[more]
B3H692_ARATH	4.4e-06	36.89	Uncharacterized protein OS=Arabidopsis thaliana GN=At2g18969 PE=4 SV=1	[more]
G7IN04_MEDTR	7.5e-06	36.67	Transcription factor/transcription regulator OS=Medicago truncatula GN=MTR_2g036...	[more]

BLAST of CmoCh05G007320 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18969.1	2.2e-09	36.89	BEST Arabidopsis thaliana protein match is: sequence-specific DNA bi...	[more]
AT2G43060.1	6.0e-07	32.71	ILI1 binding bHLH 1	[more]

BLAST of CmoCh05G007320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778667500\|ref\|XP_011648935.1\|	1.6e-25	61.72	PREDICTED: uncharacterized protein At4g30180 [Cucumis sativus]	[more]
gi\|659069736\|ref\|XP_008451551.1\|	3.5e-25	61.24	PREDICTED: uncharacterized protein At4g30180 isoform X2 [Cucumis melo]	[more]
gi\|659069734\|ref\|XP_008451543.1\|	6.0e-25	60.31	PREDICTED: uncharacterized protein At4g30180 isoform X1 [Cucumis melo]	[more]
gi\|1012002547\|ref\|XP_015935237.1\|	7.2e-10	43.27	PREDICTED: uncharacterized protein At4g30180 [Arachis duranensis]	[more]
gi\|1021473913\|ref\|XP_016201464.1\|	3.6e-09	44.34	PREDICTED: uncharacterized protein At4g30180 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G007320.1	CmoCh05G007320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 46..105 score: 1.8
None	No IPR available	unknown	Coil	Coil	coord: 33..63 scor
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 1..109 score: 5.8
None	No IPR available	PANTHER	PTHR33124:SF4	SUBFAMILY NOT NAMED	coord: 1..109 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G007320	Cucsa.089190	Cucumber (Gy14) v1	cgycmoB0180
CmoCh05G007320	CmaCh12G008920	Cucurbita maxima (Rimu)	cmacmoB191
CmoCh05G007320	CmaCh05G006950	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G007320	Cla022808	Watermelon (97103) v1	cmowmB764
CmoCh05G007320	Csa2G060350	Cucumber (Chinese Long) v2	cmocuB779
CmoCh05G007320	ClCG11G011990	Watermelon (Charleston Gray)	cmowcgB696
CmoCh05G007320	CSPI02G06190	Wild cucumber (PI 183967)	cmocpiB784
CmoCh05G007320	Cp4.1LG07g07450	Cucurbita pepo (Zucchini)	cmocpeB743
CmoCh05G007320	Cp4.1LG11g06340	Cucurbita pepo (Zucchini)	cmocpeB724
CmoCh05G007320	CsaV3_2G008530	Cucumber (Chinese Long) v3	cmocucB0920
CmoCh05G007320	Carg08385	Silver-seed gourd	carcmoB0087
CmoCh05G007320	Carg24212	Silver-seed gourd	carcmoB1334

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G007320	CmoCh12G009000	Cucurbita moschata (Rifu)	cmocmoB149

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G007320	Cucumber (Chinese Long) v3	cmocucB0912
CmoCh05G007320	Watermelon (97103) v2	cmowmbB784
CmoCh05G007320	Watermelon (97103) v2	cmowmbB795
CmoCh05G007320	Wax gourd	cmowgoB0927
CmoCh05G007320	Wax gourd	cmowgoB0969
CmoCh05G007320	Cucurbita moschata (Rifu)	cmocmoB076
CmoCh05G007320	Cucurbita moschata (Rifu)	cmocmoB128
CmoCh05G007320	Cucumber (Gy14) v1	cgycmoB0144
CmoCh05G007320	Cucurbita maxima (Rimu)	cmacmoB096
CmoCh05G007320	Cucurbita maxima (Rimu)	cmacmoB160
CmoCh05G007320	Wild cucumber (PI 183967)	cmocpiB779
CmoCh05G007320	Cucumber (Chinese Long) v2	cmocuB772
CmoCh05G007320	Melon (DHL92) v3.5.1	cmomeB711
CmoCh05G007320	Melon (DHL92) v3.5.1	cmomeB725
CmoCh05G007320	Watermelon (Charleston Gray)	cmowcgB709
CmoCh05G007320	Watermelon (97103) v1	cmowmB766
CmoCh05G007320	Cucurbita pepo (Zucchini)	cmocpeB716
CmoCh05G007320	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G007320	Cucurbita pepo (Zucchini)	cmocpeB729
CmoCh05G007320	Cucurbita pepo (Zucchini)	cmocpeB736
CmoCh05G007320	Bottle gourd (USVL1VR-Ls)	cmolsiB703
CmoCh05G007320	Bottle gourd (USVL1VR-Ls)	cmolsiB722
CmoCh05G007320	Cucumber (Gy14) v2	cgybcmoB126
CmoCh05G007320	Cucumber (Gy14) v2	cgybcmoB240
CmoCh05G007320	Melon (DHL92) v3.6.1	cmomedB807
CmoCh05G007320	Melon (DHL92) v3.6.1	cmomedB822
CmoCh05G007320	Silver-seed gourd	carcmoB0815
CmoCh05G007320	Silver-seed gourd	carcmoB1066