ClCG11G011990 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAGGCAAATTGTGAGAAAAGGATCAAGAAGGGTATTTTCCCTAGAACCGAACAAAGTTGCATACACCATGTTTGCAAGAAACTATGTCAAATATTTGATGACATCTTTAGTTAAAATCTCTCATCATCAACAACAAAAAAATTTTCAGAAACTTGTGAAGTTTGAAGTTGACATGGCAATGGCTCTATCAGCAAGTGAATTTGCTTGGGGAATTGCTCTAAAAAAGAAGCTTCTTCAAAGAGAAGTTGGCAATGGCAATGAAAATGGTTTTGATTTCTCTCTCCAAACAGTCAAATTTTCTCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGATGGAAAATGGGTTGATGAAGCTGAGAAAAATCATACCAGGTGGTAGTGATTTTAATGTTGGAGGTTTGGAAGAAGATGATTTGTTGAAACAAACTGAAAGTTATGTAAAATGTCTTGAGTTGCAAGTGAATGTTCTTAGAGGTTTGGTTGAAACAAACACATTTTAA ATGGGAAGGCAAATTGTGAGAAAAGGATCAAGAAGGGTATTTTCCCTAGAACCGAACAAAGTTGCATACACCATGTTTGCAAGAAACTATGTCAAATATTTGATGACATCTTTAGTTAAAATCTCTCATCATCAACAACAAAAAAATTTTCAGAAACTTGTGAAGTTTGAAGTTGACATGGCAATGGCTCTATCAGCAAGTGAATTTGCTTGGGGAATTGCTCTAAAAAAGAAGCTTCTTCAAAGAGAAGTTGGCAATGGCAATGAAAATGGTTTTGATTTCTCTCTCCAAACAGTCAAATTTTCTCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGATGGAAAATGGGTTGATGAAGCTGAGAAAAATCATACCAGGTGGTAGTGATTTTAATGTTGGAGGTTTGGAAGAAGATGATTTGTTGAAACAAACTGAAAGTTATGTAAAATGTCTTGAGTTGCAAGTGAATGTTCTTAGAGGTTTGGTTGAAACAAACACATTTTAA ATGGGAAGGCAAATTGTGAGAAAAGGATCAAGAAGGGTATTTTCCCTAGAACCGAACAAAGTTGCATACACCATGTTTGCAAGAAACTATGTCAAATATTTGATGACATCTTTAGTTAAAATCTCTCATCATCAACAACAAAAAAATTTTCAGAAACTTGTGAAGTTTGAAGTTGACATGGCAATGGCTCTATCAGCAAGTGAATTTGCTTGGGGAATTGCTCTAAAAAAGAAGCTTCTTCAAAGAGAAGTTGGCAATGGCAATGAAAATGGTTTTGATTTCTCTCTCCAAACAGTCAAATTTTCTCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGATGGAAAATGGGTTGATGAAGCTGAGAAAAATCATACCAGGTGGTAGTGATTTTAATGTTGGAGGTTTGGAAGAAGATGATTTGTTGAAACAAACTGAAAGTTATGTAAAATGTCTTGAGTTGCAAGTGAATGTTCTTAGAGGTTTGGTTGAAACAAACACATTTTAA MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHHQQQKNFQKLVKFEVDMAMALSASEFAWGIALKKKLLQREVGNGNENGFDFSLQTVKFSQEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGLEEDDLLKQTESYVKCLELQVNVLRGLVETNTF
BLAST of ClCG11G011990 vs. Swiss-Prot
Match: RTL1_MOUSE (Retrotransposon-like protein 1 OS=Mus musculus GN=Rtl1 PE=2 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 2.5e-13 Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 1
HSP 2 Score: 75.9 bits (185), Expect = 5.6e-13 Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 1
HSP 3 Score: 70.9 bits (172), Expect = 1.8e-11 Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1
HSP 4 Score: 62.8 bits (151), Expect = 4.9e-09 Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1
HSP 5 Score: 62.4 bits (150), Expect = 6.4e-09 Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1
HSP 6 Score: 59.7 bits (143), Expect = 4.1e-08 Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1
HSP 7 Score: 58.5 bits (140), Expect = 9.2e-08 Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 1
HSP 8 Score: 56.2 bits (134), Expect = 4.6e-07 Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 1
BLAST of ClCG11G011990 vs. Swiss-Prot
Match: RQC2_YEAST (Ribosome quality control complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RQC2 PE=1 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.1e-12 Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 1
HSP 2 Score: 72.8 bits (177), Expect = 4.7e-12 Identity = 46/95 (48.42%), Postives = 57/95 (60.00%), Query Frame = 1
BLAST of ClCG11G011990 vs. Swiss-Prot
Match: RPGR1_MOUSE (X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 OS=Mus musculus GN=Rpgrip1 PE=1 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 1.8e-11 Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1
HSP 2 Score: 68.2 bits (165), Expect = 1.2e-10 Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1
HSP 3 Score: 67.4 bits (163), Expect = 2.0e-10 Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1
BLAST of ClCG11G011990 vs. Swiss-Prot
Match: RYR1_RABIT (Ryanodine receptor 1 OS=Oryctolagus cuniculus GN=RYR1 PE=1 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.0e-11 Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1
HSP 2 Score: 67.4 bits (163), Expect = 2.0e-10 Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 1
BLAST of ClCG11G011990 vs. Swiss-Prot
Match: PELP1_HUMAN (Proline-, glutamic acid- and leucine-rich protein 1 OS=Homo sapiens GN=PELP1 PE=1 SV=2) HSP 1 Score: 69.3 bits (168), Expect = 5.2e-11 Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = 1
HSP 2 Score: 65.5 bits (158), Expect = 7.5e-10 Identity = 37/64 (57.81%), Postives = 40/64 (62.50%), Query Frame = 1
HSP 3 Score: 60.8 bits (146), Expect = 1.9e-08 Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1
HSP 4 Score: 60.5 bits (145), Expect = 2.4e-08 Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = 1
HSP 5 Score: 38.9 bits (89), Expect = 7.5e-02 Identity = 26/56 (46.43%), Postives = 29/56 (51.79%), Query Frame = 1
BLAST of ClCG11G011990 vs. TrEMBL
Match: F0ZND9_DICPU (Putative uncharacterized protein OS=Dictyostelium purpureum GN=DICPUDRAFT_98183 PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13 Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 1
BLAST of ClCG11G011990 vs. TrEMBL
Match: F0ZND9_DICPU (Putative uncharacterized protein OS=Dictyostelium purpureum GN=DICPUDRAFT_98183 PE=4 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 3.1e-02 Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1
HSP 2 Score: 45.1 bits (105), Expect = 1.2e-01 Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1
HSP 3 Score: 45.1 bits (105), Expect = 1.2e-01 Identity = 31/78 (39.74%), Postives = 34/78 (43.59%), Query Frame = 1
HSP 4 Score: 41.2 bits (95), Expect = 1.7e+00 Identity = 29/74 (39.19%), Postives = 41/74 (55.41%), Query Frame = 1
HSP 5 Score: 40.0 bits (92), Expect = 3.8e+00 Identity = 21/59 (35.59%), Postives = 36/59 (61.02%), Query Frame = 1
HSP 6 Score: 39.7 bits (91), Expect = 4.9e+00 Identity = 22/66 (33.33%), Postives = 39/66 (59.09%), Query Frame = 1
HSP 7 Score: 33.1 bits (74), Expect = 4.6e+02 Identity = 15/37 (40.54%), Postives = 24/37 (64.86%), Query Frame = 1
HSP 8 Score: 80.9 bits (198), Expect = 1.9e-12 Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1
BLAST of ClCG11G011990 vs. TrEMBL
Match: M6VB36_LEPIR (Uncharacterized protein OS=Leptospira interrogans str. HAI1536 GN=LEP1GSC172_3748 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10 Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 1
HSP 2 Score: 80.9 bits (198), Expect = 1.9e-12 Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1
BLAST of ClCG11G011990 vs. TrEMBL
Match: T0FVQ1_9LEPT (Uncharacterized protein OS=Leptospira noguchii serovar Panama str. CZ214 GN=LEP1GSC059_2554 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10 Identity = 42/76 (55.26%), Postives = 48/76 (63.16%), Query Frame = 1
HSP 2 Score: 80.1 bits (196), Expect = 3.3e-12 Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1
BLAST of ClCG11G011990 vs. TrEMBL
Match: A8XEI1_CAEBR (Protein CBG12079 OS=Caenorhabditis briggsae GN=CBG12079 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11 Identity = 43/76 (56.58%), Postives = 50/76 (65.79%), Query Frame = 1
HSP 2 Score: 77.8 bits (190), Expect = 1.6e-11 Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1
HSP 3 Score: 80.1 bits (196), Expect = 3.3e-12 Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1
BLAST of ClCG11G011990 vs. TAIR10
Match: AT2G18969.1 (AT2G18969.1 BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT4G30180.1)) HSP 1 Score: 112.1 bits (279), Expect = 3.9e-25 Identity = 70/199 (35.18%), Postives = 112/199 (56.28%), Query Frame = 1
BLAST of ClCG11G011990 vs. TAIR10
Match: AT5G03710.1 (AT5G03710.1 unknown protein) HSP 1 Score: 76.3 bits (186), Expect = 2.4e-14 Identity = 38/52 (73.08%), Postives = 40/52 (76.92%), Query Frame = 1
HSP 2 Score: 75.9 bits (185), Expect = 3.1e-14 Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1
BLAST of ClCG11G011990 vs. TAIR10
Match: AT1G47300.1 (AT1G47300.1 F-box family protein) HSP 1 Score: 71.6 bits (174), Expect = 5.9e-13 Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1
HSP 2 Score: 68.2 bits (165), Expect = 6.5e-12 Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
HSP 3 Score: 66.2 bits (160), Expect = 2.5e-11 Identity = 33/47 (70.21%), Postives = 34/47 (72.34%), Query Frame = 1
HSP 4 Score: 63.2 bits (152), Expect = 2.1e-10 Identity = 35/63 (55.56%), Postives = 38/63 (60.32%), Query Frame = 1
BLAST of ClCG11G011990 vs. TAIR10
Match: AT4G02810.1 (AT4G02810.1 Protein of unknown function (DUF3049)) HSP 1 Score: 68.6 bits (166), Expect = 5.0e-12 Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1
HSP 2 Score: 67.8 bits (164), Expect = 8.5e-12 Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1
HSP 3 Score: 63.2 bits (152), Expect = 2.1e-10 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1
HSP 4 Score: 60.8 bits (146), Expect = 1.0e-09 Identity = 30/41 (73.17%), Postives = 31/41 (75.61%), Query Frame = 1
BLAST of ClCG11G011990 vs. TAIR10
Match: AT1G08340.1 (AT1G08340.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain) HSP 1 Score: 60.5 bits (145), Expect = 1.4e-09 Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 1
HSP 2 Score: 56.6 bits (135), Expect = 2.0e-08 Identity = 39/124 (31.45%), Postives = 64/124 (51.61%), Query Frame = 1
BLAST of ClCG11G011990 vs. NCBI nr
Match: gi|659069734|ref|XP_008451543.1| (PREDICTED: uncharacterized protein At4g30180 isoform X1 [Cucumis melo]) HSP 1 Score: 278.9 bits (712), Expect = 6.9e-72 Identity = 152/203 (74.88%), Postives = 167/203 (82.27%), Query Frame = 1
BLAST of ClCG11G011990 vs. NCBI nr
Match: gi|659069736|ref|XP_008451551.1| (PREDICTED: uncharacterized protein At4g30180 isoform X2 [Cucumis melo]) HSP 1 Score: 274.2 bits (700), Expect = 1.7e-70 Identity = 150/203 (73.89%), Postives = 165/203 (81.28%), Query Frame = 1
BLAST of ClCG11G011990 vs. NCBI nr
Match: gi|330801824|ref|XP_003288923.1| (hypothetical protein DICPUDRAFT_98183 [Dictyostelium purpureum]) HSP 1 Score: 84.0 bits (206), Expect = 3.3e-13 Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 1
BLAST of ClCG11G011990 vs. NCBI nr
Match: gi|330801824|ref|XP_003288923.1| (hypothetical protein DICPUDRAFT_98183 [Dictyostelium purpureum]) HSP 1 Score: 47.0 bits (110), Expect = 4.4e-02 Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1
HSP 2 Score: 45.1 bits (105), Expect = 1.7e-01 Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1
HSP 3 Score: 45.1 bits (105), Expect = 1.7e-01 Identity = 31/78 (39.74%), Postives = 34/78 (43.59%), Query Frame = 1
HSP 4 Score: 41.2 bits (95), Expect = 2.4e+00 Identity = 29/74 (39.19%), Postives = 41/74 (55.41%), Query Frame = 1
HSP 5 Score: 40.0 bits (92), Expect = 5.4e+00 Identity = 21/59 (35.59%), Postives = 36/59 (61.02%), Query Frame = 1
HSP 6 Score: 39.7 bits (91), Expect = 7.1e+00 Identity = 22/66 (33.33%), Postives = 39/66 (59.09%), Query Frame = 1
HSP 7 Score: 33.1 bits (74), Expect = 6.6e+02 Identity = 15/37 (40.54%), Postives = 24/37 (64.86%), Query Frame = 1
HSP 8 Score: 82.4 bits (202), Expect = 9.5e-13 Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 1
BLAST of ClCG11G011990 vs. NCBI nr
Match: gi|294948864|ref|XP_002785933.1| (hypothetical protein Pmar_PMAR023656 [Perkinsus marinus ATCC 50983]) HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11 Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1
HSP 2 Score: 73.2 bits (178), Expect = 5.8e-10 Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1
HSP 3 Score: 68.9 bits (167), Expect = 1.1e-08 Identity = 42/91 (46.15%), Postives = 50/91 (54.95%), Query Frame = 1
HSP 4 Score: 57.4 bits (137), Expect = 3.3e-05 Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1
HSP 5 Score: 50.1 bits (118), Expect = 5.2e-03 Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 1
HSP 6 Score: 81.6 bits (200), Expect = 1.6e-12 Identity = 47/83 (56.63%), Postives = 55/83 (66.27%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |