CmoCh05G005420 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G005420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRing finger protein, putative
LocationCmo_Chr05 : 2619017 .. 2619910 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTCGGAATTACCAGAAAGCTTTTCCCCGTCGCAGCTGGAACTCACCAACAAAGCTTCAATTGTTCTGCCTGCCCTTACGACTGCCCTTTCGACTGCTTAGATCTCCCAGATTTCTACTTCTCGCCGCCGCCGCCGCTGCCGCTGCCGCCTTTTGGCGACCACCAAAAACAGCTTCCAACTATAGTCATCGTCATACTTGCTCTGTTTGTTGGGTTCTTCTTCACTTTTAGTTTCTACATCATTATAGTAAAATGCCAAGCTTGGCGTAGCGGCTCCGGCAACCAAGGGGCGGAGGCGTCGCAATTGAACGGCGAAGATGGAGAATTTCTAAACGAGAATCAAGTCGATCATCCCATTTGGTTCATAACCACCGTCGGGCTGCAACAATCGATCATCAACTCAATCACGGTTTGCAAATACAAGAAAGGTGAGGGCTTGATCGAAGGAACAGTTTGCTCTGTTTGTTTGAATGAATTTCAAGAAGACGAAATGCTCCGGCTGTTACCCAAATGTAGCCACGCGTTTCATATTGGGTGCGTTGATACTTGGCTGAGGACTCATACCACTTGCCCACTCTGTCGGGCCCATATTCTTACTGATTTTCCGACCTCCAACGCCGCGAGACCGCCGAATTCGGGTCATTTGAATCAAAACGAAGCTAATTTGGGTGTAATTGAAGAGACCCAGATGGAGAATTTGGAGGGGGAAGAACAGAGTGCTGTGTCCGGCGGCGGCGGCGTTGAAAACAGAGGAGATGCAGTTTATGAACAGAGAGACATTGGGGTTCCTCAGATTGGGGAGATTGTTCCAAAAGAAGGGGTTTTTGAATCCGATGATTCTAAAATGGAAGTAACTGAAACAATGATGAACTGTTCTTCTGCAACATGA

mRNA sequence

ATGGCGGTCGGAATTACCAGAAAGCTTTTCCCCGTCGCAGCTGGAACTCACCAACAAAGCTTCAATTGTTCTGCCTGCCCTTACGACTGCCCTTTCGACTGCTTAGATCTCCCAGATTTCTACTTCTCGCCGCCGCCGCCGCTGCCGCTGCCGCCTTTTGGCGACCACCAAAAACAGCTTCCAACTATAGTCATCGTCATACTTGCTCTGTTTGTTGGGTTCTTCTTCACTTTTAGTTTCTACATCATTATAGTAAAATGCCAAGCTTGGCGTAGCGGCTCCGGCAACCAAGGGGCGGAGGCGTCGCAATTGAACGGCGAAGATGGAGAATTTCTAAACGAGAATCAAGTCGATCATCCCATTTGGTTCATAACCACCGTCGGGCTGCAACAATCGATCATCAACTCAATCACGGTTTGCAAATACAAGAAAGGTGAGGGCTTGATCGAAGGAACAGTTTGCTCTGTTTGTTTGAATGAATTTCAAGAAGACGAAATGCTCCGGCTGTTACCCAAATGTAGCCACGCGTTTCATATTGGGTGCGTTGATACTTGGCTGAGGACTCATACCACTTGCCCACTCTGTCGGGCCCATATTCTTACTGATTTTCCGACCTCCAACGCCGCGAGACCGCCGAATTCGGGTCATTTGAATCAAAACGAAGCTAATTTGGGTGTAATTGAAGAGACCCAGATGGAGAATTTGGAGGGGGAAGAACAGAGTGCTGTGTCCGGCGGCGGCGGCGTTGAAAACAGAGGAGATGCAGTTTATGAACAGAGAGACATTGGGGTTCCTCAGATTGGGGAGATTGTTCCAAAAGAAGGGGTTTTTGAATCCGATGATTCTAAAATGGAAGTAACTGAAACAATGATGAACTGTTCTTCTGCAACATGA

Coding sequence (CDS)

ATGGCGGTCGGAATTACCAGAAAGCTTTTCCCCGTCGCAGCTGGAACTCACCAACAAAGCTTCAATTGTTCTGCCTGCCCTTACGACTGCCCTTTCGACTGCTTAGATCTCCCAGATTTCTACTTCTCGCCGCCGCCGCCGCTGCCGCTGCCGCCTTTTGGCGACCACCAAAAACAGCTTCCAACTATAGTCATCGTCATACTTGCTCTGTTTGTTGGGTTCTTCTTCACTTTTAGTTTCTACATCATTATAGTAAAATGCCAAGCTTGGCGTAGCGGCTCCGGCAACCAAGGGGCGGAGGCGTCGCAATTGAACGGCGAAGATGGAGAATTTCTAAACGAGAATCAAGTCGATCATCCCATTTGGTTCATAACCACCGTCGGGCTGCAACAATCGATCATCAACTCAATCACGGTTTGCAAATACAAGAAAGGTGAGGGCTTGATCGAAGGAACAGTTTGCTCTGTTTGTTTGAATGAATTTCAAGAAGACGAAATGCTCCGGCTGTTACCCAAATGTAGCCACGCGTTTCATATTGGGTGCGTTGATACTTGGCTGAGGACTCATACCACTTGCCCACTCTGTCGGGCCCATATTCTTACTGATTTTCCGACCTCCAACGCCGCGAGACCGCCGAATTCGGGTCATTTGAATCAAAACGAAGCTAATTTGGGTGTAATTGAAGAGACCCAGATGGAGAATTTGGAGGGGGAAGAACAGAGTGCTGTGTCCGGCGGCGGCGGCGTTGAAAACAGAGGAGATGCAGTTTATGAACAGAGAGACATTGGGGTTCCTCAGATTGGGGAGATTGTTCCAAAAGAAGGGGTTTTTGAATCCGATGATTCTAAAATGGAAGTAACTGAAACAATGATGAACTGTTCTTCTGCAACATGA
Homology
[Close]
BLAST of CmoCh05G005420 vs. Swiss-Prot
Match: ATL54_ARATH (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2)

HSP 1 Score: 177.2 bits (448), Expect = 2.7e-43
Identity = 117/285 (41.05%), Postives = 145/285 (50.88%), Query Frame = 1 

Query: 7   RKLFPVAAGTHQQSFNCS--ACPYDCPFDCLDLPDFYF---------SPPPPLPLP---- 66
           RKLFP  A    ++ +CS   C   CP++C   PD+Y          S P P P P    
Sbjct: 7   RKLFPTLASETNKTLDCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSPCPSPSI 66

Query: 67  -----PFGDHQKQLPTIVIVILA------LFVGFFFTFSFYIIIVKCQAWRSGSGNQGAE 126
                P  D    L  I I+ +       L  GFF    F+   V          NQG  
Sbjct: 67  SAVYLPSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVN-------RVNQGTY 126

Query: 127 ASQLNGEDG----EFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSV 186
            S     D     EF +  QVDHPIW I T GLQQSIINSIT+C YK+G+GLIE T C V
Sbjct: 127 QSDNEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPV 186

Query: 187 CLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFPTSNAARPPNSGH 246
           CLNEF+EDE LRLLPKC+HAFHI C+DTWL +HT CPLCRA I     T+    P  SG 
Sbjct: 187 CLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTT----PRYSGP 246

Query: 247 LNQNEANLGVIEETQMENLEGEEQSAVSGGGGVENRGDAVYEQRD 262
           +       G    + +EN   +E+      G +ENR D+ +++ D
Sbjct: 247 VEVTPGGSG----SHLENDGVDEED----HGEIENRVDSDFKESD 272

[Close]
BLAST of CmoCh05G005420 vs. Swiss-Prot
Match: ATL55_ARATH (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-36
Identity = 82/171 (47.95%), Postives = 105/171 (61.40%), Query Frame = 1 

Query: 34  CLDLPDFYFS----PPPPLPLPPFGDHQKQLPTIVIVILALFVGFFFTFSFYIIIVKCQA 93
           CL   D  F     PPPP P PP  +    LPT + V+ ++ +  F  F  Y+ I + + 
Sbjct: 12  CLQFKDLRFCFRQYPPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRR 71

Query: 94  WRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLI 153
             + S   G + +Q   ED     +    H +W I TVGL +S INSITV  +KKGEG+I
Sbjct: 72  ISAASVTPG-DTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGII 131

Query: 154 EGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHIL 201
           +GT CSVCLNEF+EDE LRLLPKCSHAFH+ C+DTWL +H  CPLCRA +L
Sbjct: 132 DGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVL 181

[Close]
BLAST of CmoCh05G005420 vs. Swiss-Prot
Match: ATL41_ORYSJ (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 4.5e-30
Identity = 92/257 (35.80%), Postives = 126/257 (49.03%), Query Frame = 1 

Query: 17  HQQSFNCSA--CPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQLPT---IVIVILALF 76
           ++ + +CS   C   CP  C     F F PPPP  +          P    +VI I+ + 
Sbjct: 11  YEPTRDCSQGLCSMYCPQWCY----FIFPPPPPFDVAGTSADDSSGPVFSPLVIAIIGVL 70

Query: 77  VGFFFTFSFYIIIVK-CQAWRS------GSGNQGAEASQLNGEDGEFLNENQVDHPIWFI 136
              F   S+Y  I K C    S      GS + GA      G  G   +     H  W +
Sbjct: 71  ASAFLLVSYYTFISKYCGTVSSLRGRVFGSSSGGAAYGGGAGSGGRHGHGQSRSHESWNV 130

Query: 137 TTV-GLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVD 196
           +   GL +++IN ITVCKY++G+G +  T CSVCL EF + E LRLLP+CSHAFH  C+D
Sbjct: 131 SPPSGLDETLINKITVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCID 190

Query: 197 TWLRTHTTCPLCRAHIL-----TDFPTSNAARPPNSGHLNQNEANLGVIEETQMENLEGE 256
           TWL++H+ CPLCRA+I         P      P  +G  N +E    V+    +ENL  E
Sbjct: 191 TWLKSHSNCPLCRANITFVTVGLASPEPEGCAPGETGGDNTHEV---VVVMDGLENLCEE 250

[Close]
BLAST of CmoCh05G005420 vs. Swiss-Prot
Match: ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 2.7e-27
Identity = 79/200 (39.50%), Postives = 107/200 (53.50%), Query Frame = 1 

Query: 15  GTHQQSF-NCS--ACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQ-LPTIVIVILAL 74
           GT   S+ +CS   C   CP  C  +    F PPP   L    D        ++I ++ +
Sbjct: 11  GTTYDSYRDCSQGVCSVYCPQWCYVI----FPPPPSFYLDDEDDSSSSDFSPLLIALIGI 70

Query: 75  FVGFFFTFSFYIIIVK-CQAWRSGSGNQGAEASQLNGEDGEFL-----NENQVDHPIWFI 134
               F   S+Y +I K C   R  S +  A A      D  +      N N   +P   I
Sbjct: 71  LASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGATNPNQTI 130

Query: 135 TTV---GLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGC 194
                 GL +S+I SITV KY+K +G +E + CSVCL+EFQE+E LRLLPKC+HAFH+ C
Sbjct: 131 GGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPC 190

Query: 195 VDTWLRTHTTCPLCRAHILT 202
           +DTWL++H+ CPLCRA I+T
Sbjct: 191 IDTWLKSHSNCPLCRAFIVT 206

[Close]
BLAST of CmoCh05G005420 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.7e-25
Identity = 77/220 (35.00%), Postives = 115/220 (52.27%), Query Frame = 1 

Query: 26  CPYDCPFDCLDLPDFYFSPPPPLPL--PPFGDHQKQLPTIVIVILALFVGFFFTFSFYII 85
           C   CP  C       F PPPP                 ++I ++ +        S+Y +
Sbjct: 22  CNIYCPQWCY----LIFPPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTL 81

Query: 86  IVK-CQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKY 145
           I K C      S ++    +  NGE G F +  ++          GL +S+I SITV KY
Sbjct: 82  ISKYCHRHHQTSSSETLNLNH-NGE-GFFSSTQRIS-----TNGDGLNESMIKSITVYKY 141

Query: 146 KKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHIL-T 205
           K G+G ++G+ CSVCL+EF+E+E LRLLPKC+HAFH+ C+DTWL++H+ CPLCRA +   
Sbjct: 142 KSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGV 201

Query: 206 DFPTSNAARPPNSGHLNQNEA--NLGVIEETQMENLEGEE 240
           + PT++  +  +    NQ+ +    G + E  + NL G E
Sbjct: 202 NNPTASVGQNVSVVVANQSNSAHQTGSVSEINL-NLAGYE 229

[Close]
BLAST of CmoCh05G005420 vs. TrEMBL
Match: A0A0A0LPJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G369190 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 5.0e-113
Identity = 217/311 (69.77%), Postives = 242/311 (77.81%), Query Frame = 1 

Query: 1   MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQL 60
           MAV ++RKLFPVA GT   + NCSACPYDCP+DC   PD YFSPPPP P  P  DHQKQL
Sbjct: 1   MAVTLSRKLFPVATGTALPTTNCSACPYDCPYDCYGFPDLYFSPPPPPP--PLSDHQKQL 60

Query: 61  PTIVIVILALFVGFFFTFSFYIIIVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHP 120
           PT  I+IL LF+ FF  F+FYII+VKC++W SGS N+GAEA Q +G +GEF+NENQVDHP
Sbjct: 61  PT-TIIILILFIAFFVAFTFYIIVVKCRSWYSGSANEGAEALQSDGGEGEFMNENQVDHP 120

Query: 121 IWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIG 180
           IWFITT GLQQS+INSITVCKYKK EGLIEGT CSVCL+EFQEDEMLRLLPKCSHAFHIG
Sbjct: 121 IWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIG 180

Query: 181 CVDTWLRTHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIEETQMENLEGEEQ 240
           CVDTWLRTHTTCPLCRAHILTDF T N+ RPPN G LNQNE NLG+ E+TQMEN E   +
Sbjct: 181 CVDTWLRTHTTCPLCRAHILTDFTTPNSVRPPNIGPLNQNEGNLGLNEDTQMEN-ENTNR 240

Query: 241 SAV--SGGGGV-------ENRGDAVYEQRDIGVPQIGEIVPKEGVFESDDSKMEVTETM- 298
            AV  + GGGV       ENRGDAV EQR     ++ EIV KEG FESDDSK+E  E+M 
Sbjct: 241 EAVRENEGGGVSISSESSENRGDAVDEQR-----EVEEIVQKEGNFESDDSKVEGNESMR 300

[Close]
BLAST of CmoCh05G005420 vs. TrEMBL
Match: B9RJR5_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_1037570 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.5e-64
Identity = 132/232 (56.90%), Postives = 157/232 (67.67%), Query Frame = 1 

Query: 7   RKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQLPTIVIV 66
           RKLFP  + T+Q       C   CP++C    D+YF PPPP P PP    +  L   VI+
Sbjct: 4   RKLFPSLSTTNQTVDCPDFCDPACPYNCYPYADYYFLPPPPPPPPPLLPQEHHLSPYVII 63

Query: 67  ILALFVGFFFTFSFYIIIVK-CQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFIT 126
           ++++   FF   S+Y+II K C  W S S N  A  S+ +  D EFL+ENQVDHPIWFIT
Sbjct: 64  LVSVLASFFLVVSYYVIIAKSCPGWCS-SRNNRAPQSEADNTDEEFLDENQVDHPIWFIT 123

Query: 127 TVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTW 186
           T GLQQSIINSITVCKYKKGEGLIEGT CSVCL+EFQ+DE LRLLPKC+HAFHI C+DTW
Sbjct: 124 TAGLQQSIINSITVCKYKKGEGLIEGTECSVCLSEFQQDETLRLLPKCNHAFHISCIDTW 183

Query: 187 LRTHTTCPLCRAHILTD-FPTSNAARPPNSGHLNQNEANLGVIEETQMENLE 237
           LR+HT CPLCRAHI+ D  PT   +       +NQN  NL  I  TQM+N E
Sbjct: 184 LRSHTNCPLCRAHIVHDPVPTPLIS-------INQNPDNLNTIISTQMDNSE 227

[Close]
BLAST of CmoCh05G005420 vs. TrEMBL
Match: B9GV12_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0002s10220g PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.8e-63
Identity = 143/292 (48.97%), Postives = 178/292 (60.96%), Query Frame = 1 

Query: 7   RKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQLPTIVIV 66
           RKLFP+   T+Q       C   CP++C    D+Y  PPPP P  PF   +  L   VI+
Sbjct: 6   RKLFPIGTETNQTIDCPDFCDPACPYNCYPYSDYYLLPPPPPP--PFLPQEHHLSPYVII 65

Query: 67  ILALFVGFFFTFSFYIIIVK-CQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFIT 126
           I+AL   FF   S+Y+I+ K C  W  GS N     +Q +  D EFL+EN+VDHPIWFIT
Sbjct: 66  IVALLASFFLIVSYYVIVAKSCSGW-CGSRNNTEPQAQEDDTDEEFLDENRVDHPIWFIT 125

Query: 127 TVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTW 186
           T+GLQQSIINSITVCKYKKGEGLIEGT CSVCL+EFQ+DE LRLLPKC+HAFHI C+DTW
Sbjct: 126 TIGLQQSIINSITVCKYKKGEGLIEGTECSVCLSEFQQDETLRLLPKCNHAFHISCIDTW 185

Query: 187 LRTHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIEETQMENLEGEEQSAVSG 246
           LR+HT CPLCR HI+       A+ P  S  + QN  NL     TQMEN      S V  
Sbjct: 186 LRSHTNCPLCRTHII----NGPASTPLIS--VGQNHDNLNPTFSTQMEN------SDVDS 245

Query: 247 GGGVENRGDAVYEQRDIGVPQIGEI--VPKEGVFESDDSKMEVTETMMNCSS 296
           G G     +   E R  G  ++GEI  V +E   + + +  ++ +  + CSS
Sbjct: 246 GLGNNQESNEPCENR-AGTEEVGEILQVGEERTLKDEVNSNDIGDLQVLCSS 281

[Close]
BLAST of CmoCh05G005420 vs. TrEMBL
Match: A0A061FG67_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_034836 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 4.5e-61
Identity = 133/284 (46.83%), Postives = 175/284 (61.62%), Query Frame = 1 

Query: 7   RKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQLPTIVIV 66
           RKLFP    T+Q       C   CP++C   P +Y+ PPPP P     D    +   VI+
Sbjct: 4   RKLFPTFTETNQTVDCHGFCDPACPYNCYPYPGYYYLPPPPPP--SLSDQNHYISPYVII 63

Query: 67  ILALFVGFFFTFSFYIIIVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFITT 126
           ++++   FF    +Y+IIVK       S N     +Q +G D EFL+EN+VDHPIWFITT
Sbjct: 64  LVSVLASFFLLIGYYVIIVKSCFGLCWSRNNRQPQAQTDGSDEEFLDENRVDHPIWFITT 123

Query: 127 VGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWL 186
           VGLQQSIINSITVCKYKKGEGLIEGT CSVCLNEFQE+E +RLLPKC+HAFHI C+DTWL
Sbjct: 124 VGLQQSIINSITVCKYKKGEGLIEGTECSVCLNEFQEEETVRLLPKCNHAFHISCIDTWL 183

Query: 187 RTHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIEETQMENLE-GEEQSAVSG 246
             HT CPLCRAHI+ D        PP S   +QN  N+ ++ + ++EN E G E S+ + 
Sbjct: 184 GAHTNCPLCRAHIVFD----AVCAPPTSA--DQNSNNMELVADNRIENSEIGGELSSQNQ 243

Query: 247 GGGVENRGDAVYEQRDIGVPQIG-EIVPKEGVFESDDSKMEVTE 289
           G   E   +         +P+   + + KEGV+  ++  +EV++
Sbjct: 244 GRNSELCENRARADASSELPEANDQRILKEGVYYEENGTLEVSD 279

[Close]
BLAST of CmoCh05G005420 vs. TrEMBL
Match: A0A067KZ02_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15838 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 8.4e-60
Identity = 126/238 (52.94%), Postives = 155/238 (65.13%), Query Frame = 1 

Query: 7   RKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYFSPPPPLP-----LPPFGDHQKQLP 66
           RKLFP    T+Q +     C   CP++C    D+YF PPPP P     +PP    + ++ 
Sbjct: 6   RKLFPALTATNQTTDCPDFCDPACPYNCYPYADYYFLPPPPPPPPSTLIPP----EHRIS 65

Query: 67  TIVIVILALFVGFFFTFSFYIIIVK-CQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHP 126
             VIVI++L   FF   S+Y+II K C +W     NQ   A + +  D E L+ENQ+DHP
Sbjct: 66  PYVIVIVSLLASFFLFVSYYVIIAKSCPSWFFSRNNQNPGAEEDDNIDEELLDENQIDHP 125

Query: 127 IWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIG 186
           IWFITT GLQQSIINSITVCKYKKGEGLIEGT CSVCL+EFQ+DE LRLLPKCSHAFHI 
Sbjct: 126 IWFITTSGLQQSIINSITVCKYKKGEGLIEGTECSVCLSEFQQDETLRLLPKCSHAFHIS 185

Query: 187 CVDTWLRTHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIEETQMENLEGE 239
           C+DTWLR+HT CPLCRAHI+ D    +   P  S + N + +N  V  +     +EGE
Sbjct: 186 CIDTWLRSHTNCPLCRAHIVND----SVITPLVSVNQNSDNSNQTVSIQMDDTEIEGE 235

[Close]
BLAST of CmoCh05G005420 vs. TAIR10
Match: AT1G72220.1 (AT1G72220.1 RING/U-box superfamily protein)

HSP 1 Score: 177.2 bits (448), Expect = 1.5e-44
Identity = 117/285 (41.05%), Postives = 145/285 (50.88%), Query Frame = 1 

Query: 7   RKLFPVAAGTHQQSFNCS--ACPYDCPFDCLDLPDFYF---------SPPPPLPLP---- 66
           RKLFP  A    ++ +CS   C   CP++C   PD+Y          S P P P P    
Sbjct: 7   RKLFPTLASETNKTLDCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSPCPSPSI 66

Query: 67  -----PFGDHQKQLPTIVIVILA------LFVGFFFTFSFYIIIVKCQAWRSGSGNQGAE 126
                P  D    L  I I+ +       L  GFF    F+   V          NQG  
Sbjct: 67  SAVYLPSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVN-------RVNQGTY 126

Query: 127 ASQLNGEDG----EFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSV 186
            S     D     EF +  QVDHPIW I T GLQQSIINSIT+C YK+G+GLIE T C V
Sbjct: 127 QSDNEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPV 186

Query: 187 CLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFPTSNAARPPNSGH 246
           CLNEF+EDE LRLLPKC+HAFHI C+DTWL +HT CPLCRA I     T+    P  SG 
Sbjct: 187 CLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTT----PRYSGP 246

Query: 247 LNQNEANLGVIEETQMENLEGEEQSAVSGGGGVENRGDAVYEQRD 262
           +       G    + +EN   +E+      G +ENR D+ +++ D
Sbjct: 247 VEVTPGGSG----SHLENDGVDEED----HGEIENRVDSDFKESD 272

[Close]
BLAST of CmoCh05G005420 vs. TAIR10
Match: AT5G10380.1 (AT5G10380.1 RING/U-box superfamily protein)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-37
Identity = 82/171 (47.95%), Postives = 105/171 (61.40%), Query Frame = 1 

Query: 34  CLDLPDFYFS----PPPPLPLPPFGDHQKQLPTIVIVILALFVGFFFTFSFYIIIVKCQA 93
           CL   D  F     PPPP P PP  +    LPT + V+ ++ +  F  F  Y+ I + + 
Sbjct: 12  CLQFKDLRFCFRQYPPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRR 71

Query: 94  WRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLI 153
             + S   G + +Q   ED     +    H +W I TVGL +S INSITV  +KKGEG+I
Sbjct: 72  ISAASVTPG-DTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGII 131

Query: 154 EGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHIL 201
           +GT CSVCLNEF+EDE LRLLPKCSHAFH+ C+DTWL +H  CPLCRA +L
Sbjct: 132 DGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVL 181

[Close]
BLAST of CmoCh05G005420 vs. TAIR10
Match: AT4G33565.1 (AT4G33565.1 RING/U-box superfamily protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-32
Identity = 74/179 (41.34%), Postives = 101/179 (56.42%), Query Frame = 1 

Query: 24  SACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQLPTIVIVILALFVGFFFTFSFYII 83
           S C  +CP  C  +     SPP  +       H   L  I+I+  +  +   F  +  ++
Sbjct: 91  SYCLDECPSICEIVVISGLSPPAEI------HHDDNLKRILIISASSIITTLFLLTLLVL 150

Query: 84  IVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQV--DHPIWFITTVGLQQSIINSITVCK 143
             K    R  S       S     + +F     V  DHPIW I T+GL  ++I+SI VC+
Sbjct: 151 CFKFYYRRRRSITTSRRWSMEEARNWDFDGPAPVIVDHPIWHIRTIGLNPTVISSIKVCQ 210

Query: 144 YKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHIL 201
           Y K +G++EGT CSVCL+EF+E+E LRLLPKC HAFH+ C+DTWLR+HT CPLCRA I+
Sbjct: 211 YSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPIV 263

[Close]
BLAST of CmoCh05G005420 vs. TAIR10
Match: AT3G03550.1 (AT3G03550.1 RING/U-box superfamily protein)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-28
Identity = 79/200 (39.50%), Postives = 107/200 (53.50%), Query Frame = 1 

Query: 15  GTHQQSF-NCS--ACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQ-LPTIVIVILAL 74
           GT   S+ +CS   C   CP  C  +    F PPP   L    D        ++I ++ +
Sbjct: 11  GTTYDSYRDCSQGVCSVYCPQWCYVI----FPPPPSFYLDDEDDSSSSDFSPLLIALIGI 70

Query: 75  FVGFFFTFSFYIIIVK-CQAWRSGSGNQGAEASQLNGEDGEFL-----NENQVDHPIWFI 134
               F   S+Y +I K C   R  S +  A A      D  +      N N   +P   I
Sbjct: 71  LASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGATNPNQTI 130

Query: 135 TTV---GLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGC 194
                 GL +S+I SITV KY+K +G +E + CSVCL+EFQE+E LRLLPKC+HAFH+ C
Sbjct: 131 GGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPC 190

Query: 195 VDTWLRTHTTCPLCRAHILT 202
           +DTWL++H+ CPLCRA I+T
Sbjct: 191 IDTWLKSHSNCPLCRAFIVT 206

[Close]
BLAST of CmoCh05G005420 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 115.5 bits (288), Expect = 5.4e-26
Identity = 77/220 (35.00%), Postives = 115/220 (52.27%), Query Frame = 1 

Query: 26  CPYDCPFDCLDLPDFYFSPPPPLPL--PPFGDHQKQLPTIVIVILALFVGFFFTFSFYII 85
           C   CP  C       F PPPP                 ++I ++ +        S+Y +
Sbjct: 22  CNIYCPQWCY----LIFPPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTL 81

Query: 86  IVK-CQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKY 145
           I K C      S ++    +  NGE G F +  ++          GL +S+I SITV KY
Sbjct: 82  ISKYCHRHHQTSSSETLNLNH-NGE-GFFSSTQRIS-----TNGDGLNESMIKSITVYKY 141

Query: 146 KKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHIL-T 205
           K G+G ++G+ CSVCL+EF+E+E LRLLPKC+HAFH+ C+DTWL++H+ CPLCRA +   
Sbjct: 142 KSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGV 201

Query: 206 DFPTSNAARPPNSGHLNQNEA--NLGVIEETQMENLEGEE 240
           + PT++  +  +    NQ+ +    G + E  + NL G E
Sbjct: 202 NNPTASVGQNVSVVVANQSNSAHQTGSVSEINL-NLAGYE 229

[Close]
BLAST of CmoCh05G005420 vs. NCBI nr
Match: gi|778671710|ref|XP_011649673.1| (PREDICTED: RING-H2 finger protein ATL54-like [Cucumis sativus])

HSP 1 Score: 415.6 bits (1067), Expect = 7.2e-113
Identity = 217/311 (69.77%), Postives = 242/311 (77.81%), Query Frame = 1 

Query: 1   MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQL 60
           MAV ++RKLFPVA GT   + NCSACPYDCP+DC   PD YFSPPPP P  P  DHQKQL
Sbjct: 1   MAVTLSRKLFPVATGTALPTTNCSACPYDCPYDCYGFPDLYFSPPPPPP--PLSDHQKQL 60

Query: 61  PTIVIVILALFVGFFFTFSFYIIIVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHP 120
           PT  I+IL LF+ FF  F+FYII+VKC++W SGS N+GAEA Q +G +GEF+NENQVDHP
Sbjct: 61  PT-TIIILILFIAFFVAFTFYIIVVKCRSWYSGSANEGAEALQSDGGEGEFMNENQVDHP 120

Query: 121 IWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIG 180
           IWFITT GLQQS+INSITVCKYKK EGLIEGT CSVCL+EFQEDEMLRLLPKCSHAFHIG
Sbjct: 121 IWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIG 180

Query: 181 CVDTWLRTHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIEETQMENLEGEEQ 240
           CVDTWLRTHTTCPLCRAHILTDF T N+ RPPN G LNQNE NLG+ E+TQMEN E   +
Sbjct: 181 CVDTWLRTHTTCPLCRAHILTDFTTPNSVRPPNIGPLNQNEGNLGLNEDTQMEN-ENTNR 240

Query: 241 SAV--SGGGGV-------ENRGDAVYEQRDIGVPQIGEIVPKEGVFESDDSKMEVTETM- 298
            AV  + GGGV       ENRGDAV EQR     ++ EIV KEG FESDDSK+E  E+M 
Sbjct: 241 EAVRENEGGGVSISSESSENRGDAVDEQR-----EVEEIVQKEGNFESDDSKVEGNESMR 300

[Close]
BLAST of CmoCh05G005420 vs. NCBI nr
Match: gi|659088231|ref|XP_008444871.1| (PREDICTED: RING-H2 finger protein ATL54-like [Cucumis melo])

HSP 1 Score: 409.5 bits (1051), Expect = 5.2e-111
Identity = 210/302 (69.54%), Postives = 236/302 (78.15%), Query Frame = 1 

Query: 1   MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQL 60
           MAV  +RKLFPVA GT Q + NCSACPYDCP+DC   PD YFSPPPP P  P  DHQKQL
Sbjct: 1   MAVTHSRKLFPVATGTTQPTTNCSACPYDCPYDCYGFPDLYFSPPPPPP--PLFDHQKQL 60

Query: 61  PTIVIVILALFVGFFFTFSFYIIIVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHP 120
           PT++IV++ LFV FF  F+FYII+VKC++W SGSGN+GAEA Q +G +GEF+NENQVDHP
Sbjct: 61  PTMIIVLI-LFVAFFIAFTFYIIVVKCRSWYSGSGNEGAEALQSDGGEGEFMNENQVDHP 120

Query: 121 IWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIG 180
           IWFITT GLQQS+INSITVCKYKK EGLIEGT CSVCL+EFQEDEMLRLLPKCSHAFHIG
Sbjct: 121 IWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIG 180

Query: 181 CVDTWLRTHTTCPLCRAHILTDFPT--SNAARPPNSGHLNQNEANLGVIEETQMENLEGE 240
           CVDTWLRTHTTCPLCRAHILTDF T  SN+ RPPN G LNQNE NLG+ E+TQMEN    
Sbjct: 181 CVDTWLRTHTTCPLCRAHILTDFTTSNSNSIRPPNLGPLNQNEGNLGLNEDTQMENENIN 240

Query: 241 EQSAVSGGGGV--------ENRGDAVYEQRDIGVPQIGEIVPKEGVFESDDSKMEVTETM 293
            ++     GGV        ENRGD V EQR     ++ EIV KEG FESDDSK+E  E+ 
Sbjct: 241 GEAVRENEGGVVSISSESSENRGDVVDEQR-----EVEEIVQKEGNFESDDSKVEGNEST 294

[Close]
BLAST of CmoCh05G005420 vs. NCBI nr
Match: gi|255545848|ref|XP_002513984.1| (PREDICTED: RING-H2 finger protein ATL54 [Ricinus communis])

HSP 1 Score: 254.6 bits (649), Expect = 2.1e-64
Identity = 132/232 (56.90%), Postives = 157/232 (67.67%), Query Frame = 1 

Query: 7   RKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQLPTIVIV 66
           RKLFP  + T+Q       C   CP++C    D+YF PPPP P PP    +  L   VI+
Sbjct: 4   RKLFPSLSTTNQTVDCPDFCDPACPYNCYPYADYYFLPPPPPPPPPLLPQEHHLSPYVII 63

Query: 67  ILALFVGFFFTFSFYIIIVK-CQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFIT 126
           ++++   FF   S+Y+II K C  W S S N  A  S+ +  D EFL+ENQVDHPIWFIT
Sbjct: 64  LVSVLASFFLVVSYYVIIAKSCPGWCS-SRNNRAPQSEADNTDEEFLDENQVDHPIWFIT 123

Query: 127 TVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTW 186
           T GLQQSIINSITVCKYKKGEGLIEGT CSVCL+EFQ+DE LRLLPKC+HAFHI C+DTW
Sbjct: 124 TAGLQQSIINSITVCKYKKGEGLIEGTECSVCLSEFQQDETLRLLPKCNHAFHISCIDTW 183

Query: 187 LRTHTTCPLCRAHILTD-FPTSNAARPPNSGHLNQNEANLGVIEETQMENLE 237
           LR+HT CPLCRAHI+ D  PT   +       +NQN  NL  I  TQM+N E
Sbjct: 184 LRSHTNCPLCRAHIVHDPVPTPLIS-------INQNPDNLNTIISTQMDNSE 227

[Close]
BLAST of CmoCh05G005420 vs. NCBI nr
Match: gi|224063285|ref|XP_002301077.1| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 249.6 bits (636), Expect = 6.8e-63
Identity = 143/292 (48.97%), Postives = 178/292 (60.96%), Query Frame = 1 

Query: 7   RKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQLPTIVIV 66
           RKLFP+   T+Q       C   CP++C    D+Y  PPPP P  PF   +  L   VI+
Sbjct: 6   RKLFPIGTETNQTIDCPDFCDPACPYNCYPYSDYYLLPPPPPP--PFLPQEHHLSPYVII 65

Query: 67  ILALFVGFFFTFSFYIIIVK-CQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFIT 126
           I+AL   FF   S+Y+I+ K C  W  GS N     +Q +  D EFL+EN+VDHPIWFIT
Sbjct: 66  IVALLASFFLIVSYYVIVAKSCSGW-CGSRNNTEPQAQEDDTDEEFLDENRVDHPIWFIT 125

Query: 127 TVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTW 186
           T+GLQQSIINSITVCKYKKGEGLIEGT CSVCL+EFQ+DE LRLLPKC+HAFHI C+DTW
Sbjct: 126 TIGLQQSIINSITVCKYKKGEGLIEGTECSVCLSEFQQDETLRLLPKCNHAFHISCIDTW 185

Query: 187 LRTHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIEETQMENLEGEEQSAVSG 246
           LR+HT CPLCR HI+       A+ P  S  + QN  NL     TQMEN      S V  
Sbjct: 186 LRSHTNCPLCRTHII----NGPASTPLIS--VGQNHDNLNPTFSTQMEN------SDVDS 245

Query: 247 GGGVENRGDAVYEQRDIGVPQIGEI--VPKEGVFESDDSKMEVTETMMNCSS 296
           G G     +   E R  G  ++GEI  V +E   + + +  ++ +  + CSS
Sbjct: 246 GLGNNQESNEPCENR-AGTEEVGEILQVGEERTLKDEVNSNDIGDLQVLCSS 281

[Close]
BLAST of CmoCh05G005420 vs. NCBI nr
Match: gi|743802330|ref|XP_011016876.1| (PREDICTED: RING-H2 finger protein ATL54 [Populus euphratica])

HSP 1 Score: 245.7 bits (626), Expect = 9.9e-62
Identity = 140/292 (47.95%), Postives = 178/292 (60.96%), Query Frame = 1 

Query: 7   RKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQLPTIVIV 66
           RKLFP+   T+Q       C   CP++C    D++  PPPP P  PF   ++ L   VI+
Sbjct: 6   RKLFPIGTETNQTIDCPDFCDPACPYNCYPYSDYFLLPPPPPP--PFLPQERHLSPYVII 65

Query: 67  ILALFVGFFFTFSFYIIIVK-CQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFIT 126
           I+AL   FF   S+Y+I+ K C  W  GS N     +Q +  D EFL+EN+VDHPIWFIT
Sbjct: 66  IVALLASFFLIVSYYVIVAKSCSGW-CGSRNNTEPQAQEDDTDEEFLDENRVDHPIWFIT 125

Query: 127 TVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTW 186
           T+GLQQSIINSITVCKYKKGEGLIEGT CSVCL+EFQ+DE LRLLPKC+HAFHI C+DTW
Sbjct: 126 TIGLQQSIINSITVCKYKKGEGLIEGTECSVCLSEFQQDETLRLLPKCNHAFHISCIDTW 185

Query: 187 LRTHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIEETQMENLEGEEQSAVSG 246
           LR+HT CPLCR HI+       A+ P  S  L QN  NL     TQMEN + +       
Sbjct: 186 LRSHTNCPLCRTHII----NGPASTPLIS--LGQNHDNLNPTFSTQMENSDVD------- 245

Query: 247 GGGVENRGDAVYEQRDIGVPQIGEI--VPKEGVFESDDSKMEVTETMMNCSS 296
            G V N+      +   G  ++GEI  V  E   + + +  ++ +  + CSS
Sbjct: 246 SGLVNNQESNEPCENRAGTEEVGEILQVGDERTLKDEVNSDDIGDLQVLCSS 281

The following BLAST results are available for this feature:
BLAST of CmoCh05G005420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL54_ARATH2.7e-4341.05RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2[more]
ATL55_ARATH2.4e-3647.95E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1[more]
ATL41_ORYSJ4.5e-3035.80E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04... [more]
ATL51_ARATH2.7e-2739.50RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2[more]
ATL52_ARATH9.7e-2535.00RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1[more]
BLAST of CmoCh05G005420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPJ4_CUCSA5.0e-11369.77Uncharacterized protein OS=Cucumis sativus GN=Csa_2G369190 PE=4 SV=1[more]
B9RJR5_RICCO1.5e-6456.90Ring finger protein, putative OS=Ricinus communis GN=RCOM_1037570 PE=4 SV=1[more]
B9GV12_POPTR4.8e-6348.97Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0002s10220g PE=4 SV=1[more]
A0A061FG67_THECC4.5e-6146.83RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_034836 PE=4 S... [more]
A0A067KZ02_JATCU8.4e-6052.94Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15838 PE=4 SV=1[more]
BLAST of CmoCh05G005420 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G72220.11.5e-4441.05 RING/U-box superfamily protein[more]
AT5G10380.11.4e-3747.95 RING/U-box superfamily protein[more]
AT4G33565.11.7e-3241.34 RING/U-box superfamily protein[more]
AT3G03550.11.5e-2839.50 RING/U-box superfamily protein[more]
AT5G17600.15.4e-2635.00 RING/U-box superfamily protein[more]
BLAST of CmoCh05G005420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778671710|ref|XP_011649673.1|7.2e-11369.77PREDICTED: RING-H2 finger protein ATL54-like [Cucumis sativus][more]
gi|659088231|ref|XP_008444871.1|5.2e-11169.54PREDICTED: RING-H2 finger protein ATL54-like [Cucumis melo][more]
gi|255545848|ref|XP_002513984.1|2.1e-6456.90PREDICTED: RING-H2 finger protein ATL54 [Ricinus communis][more]
gi|224063285|ref|XP_002301077.1|6.8e-6348.97zinc finger family protein [Populus trichocarpa][more]
gi|743802330|ref|XP_011016876.1|9.9e-6247.95PREDICTED: RING-H2 finger protein ATL54 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G005420.1CmoCh05G005420.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 153..196
score: 8.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 154..195
score: 8.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 154..196
score: 1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 151..199
score: 1.0
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 1..226
score: 4.3
NoneNo IPR availablePANTHERPTHR14155:SF174SUBFAMILY NOT NAMEDcoord: 1..226
score: 4.3
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 147..205
score: 6.77

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh05G005420Cucsa.104190Cucumber (Gy14) v1cgycmoB0230
CmoCh05G005420Cucsa.160240Cucumber (Gy14) v1cgycmoB0461
CmoCh05G005420CmaCh03G008220Cucurbita maxima (Rimu)cmacmoB661
CmoCh05G005420Cla014126Watermelon (97103) v1cmowmB755
CmoCh05G005420Cla022118Watermelon (97103) v1cmowmB746
CmoCh05G005420Csa2G369190Cucumber (Chinese Long) v2cmocuB778
CmoCh05G005420Csa6G499220Cucumber (Chinese Long) v2cmocuB799
CmoCh05G005420MELO3C011051Melon (DHL92) v3.5.1cmomeB719
CmoCh05G005420MELO3C007735Melon (DHL92) v3.5.1cmomeB733
CmoCh05G005420ClCG01G018570Watermelon (Charleston Gray)cmowcgB698
CmoCh05G005420ClCG08G011350Watermelon (Charleston Gray)cmowcgB713
CmoCh05G005420CSPI02G21270Wild cucumber (PI 183967)cmocpiB783
CmoCh05G005420CSPI06G30000Wild cucumber (PI 183967)cmocpiB804
CmoCh05G005420Lsi08G009890Bottle gourd (USVL1VR-Ls)cmolsiB728
CmoCh05G005420Lsi01G007930Bottle gourd (USVL1VR-Ls)cmolsiB707
CmoCh05G005420Cp4.1LG11g04460Cucurbita pepo (Zucchini)cmocpeB720
CmoCh05G005420MELO3C011051.2Melon (DHL92) v3.6.1cmomedB816
CmoCh05G005420MELO3C007735.2Melon (DHL92) v3.6.1cmomedB830
CmoCh05G005420CsaV3_2G029930Cucumber (Chinese Long) v3cmocucB0919
CmoCh05G005420CsaV3_6G045220Cucumber (Chinese Long) v3cmocucB0942
CmoCh05G005420Cla97C01G017940Watermelon (97103) v2cmowmbB775
CmoCh05G005420Cla97C08G154340Watermelon (97103) v2cmowmbB800
CmoCh05G005420Bhi03G000877Wax gourdcmowgoB0954
CmoCh05G005420Bhi04G000652Wax gourdcmowgoB0937
CmoCh05G005420CsGy6G029490Cucumber (Gy14) v2cgybcmoB829
CmoCh05G005420CsGy2G020970Cucumber (Gy14) v2cgybcmoB239
CmoCh05G005420Carg08206Silver-seed gourdcarcmoB0087
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh05G005420CmoCh03G008680Cucurbita moschata (Rifu)cmocmoB452
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G005420Cucurbita moschata (Rifu)cmocmoB031
CmoCh05G005420Cucumber (Gy14) v1cgycmoB0872
CmoCh05G005420Cucurbita maxima (Rimu)cmacmoB060
CmoCh05G005420Cucurbita maxima (Rimu)cmacmoB786
CmoCh05G005420Wild cucumber (PI 183967)cmocpiB792
CmoCh05G005420Cucumber (Chinese Long) v2cmocuB789
CmoCh05G005420Melon (DHL92) v3.5.1cmomeB722
CmoCh05G005420Watermelon (Charleston Gray)cmowcgB691
CmoCh05G005420Watermelon (97103) v1cmowmB761
CmoCh05G005420Cucurbita pepo (Zucchini)cmocpeB719
CmoCh05G005420Cucurbita pepo (Zucchini)cmocpeB739
CmoCh05G005420Bottle gourd (USVL1VR-Ls)cmolsiB718
CmoCh05G005420Cucumber (Gy14) v2cgybcmoB398
CmoCh05G005420Melon (DHL92) v3.6.1cmomedB820
CmoCh05G005420Silver-seed gourdcarcmoB0552
CmoCh05G005420Silver-seed gourdcarcmoB0877
CmoCh05G005420Cucumber (Chinese Long) v3cmocucB0929
CmoCh05G005420Watermelon (97103) v2cmowmbB779
CmoCh05G005420Wax gourdcmowgoB0961