Carg08206 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08206
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING-H2 finger protein ATL54-like
Location	Cucurbita_argyrosperma_scaffold_015 : 110824 .. 111720 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTCGGAATTACCAGAAAGCTTTTCCCCGTCGCAGCTGGAACTCACCAACAAAGCTTCAATTGTTCTGCCTGCCCTTACGACTGCCCTTTCGACTGCTTAGATCTCCCAGATTTCTACTTCTCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCTTTTGGCGACCACCAAAAACAGCTTCCAACTATAGTCATCGTCATACTTGCTCTGTTTGTTGGGTTCTTCTTCACTTTTAGTTTCTACATCATTATCGTAAAATGCCAAGCTTGGCGTAGCGGCTCCGGCAACCAAGGGGCGGAGGCGTCGCAATTGAACGGCGAAGATGGAGAATTTCTAAACGAGAATCAAGTCGATCATCCCATTTGGTTCATAACCACCGTCGGGCTGCAACAATCGATCATCAACTCAATCACGGTTTGCAAATACAAGAAAGGTGAGGGCTTGATCGAAGGAACAGTTTGCTCTGTTTGTTTGAATGAATTTCAAGAAGACGAAATGCTCCGGCTGTTACCCAAATGTAGCCACGCGTTTCATATTGGGTGCGTTGATACTTGGCTGAGGTCTCATACCACTTGTCCACTCTGTCGGGCCCATATTCTTACTGATTTTCCGACCTCCAACGCCGCGAGACCGCCGAATTCGGGTCATTTGAATCAAAACGAAGCTAATTTGGGTGTAATTCAGGAGACCCAGATGGAGAATTTGGAGGGGGAAGAACAGAGTGCTGTCTCCGGCGGCGGCGGCGTTGAAAACAGAGGAGATGCAGTTGATGAACAGAGAGACATTGGGGTTCCTCAGATTGGGGAGATTGCTCCAAAAGAAGGGGTTTTTGAATCCGATGATTCTAAAATGGAAGTAACTGAAACAACGATGAACTGTTCTTCTGCAACATGA

mRNA sequence

ATGGCGGTCGGAATTACCAGAAAGCTTTTCCCCGTCGCAGCTGGAACTCACCAACAAAGCTTCAATTGTTCTGCCTGCCCTTACGACTGCCCTTTCGACTGCTTAGATCTCCCAGATTTCTACTTCTCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCTTTTGGCGACCACCAAAAACAGCTTCCAACTATAGTCATCGTCATACTTGCTCTGTTTGTTGGGTTCTTCTTCACTTTTAGTTTCTACATCATTATCGTAAAATGCCAAGCTTGGCGTAGCGGCTCCGGCAACCAAGGGGCGGAGGCGTCGCAATTGAACGGCGAAGATGGAGAATTTCTAAACGAGAATCAAGTCGATCATCCCATTTGGTTCATAACCACCGTCGGGCTGCAACAATCGATCATCAACTCAATCACGGTTTGCAAATACAAGAAAGGTGAGGGCTTGATCGAAGGAACAGTTTGCTCTGTTTGTTTGAATGAATTTCAAGAAGACGAAATGCTCCGGCTGTTACCCAAATGTAGCCACGCGTTTCATATTGGGTGCGTTGATACTTGGCTGAGGTCTCATACCACTTGTCCACTCTGTCGGGCCCATATTCTTACTGATTTTCCGACCTCCAACGCCGCGAGACCGCCGAATTCGGGTCATTTGAATCAAAACGAAGCTAATTTGGGTGTAATTCAGGAGACCCAGATGGAGAATTTGGAGGGGGAAGAACAGAGTGCTGTCTCCGGCGGCGGCGGCGTTGAAAACAGAGGAGATGCAGTTGATGAACAGAGAGACATTGGGGTTCCTCAGATTGGGGAGATTGCTCCAAAAGAAGGGGTTTTTGAATCCGATGATTCTAAAATGGAAGTAACTGAAACAACGATGAACTGTTCTTCTGCAACATGA

Coding sequence (CDS)

ATGGCGGTCGGAATTACCAGAAAGCTTTTCCCCGTCGCAGCTGGAACTCACCAACAAAGCTTCAATTGTTCTGCCTGCCCTTACGACTGCCCTTTCGACTGCTTAGATCTCCCAGATTTCTACTTCTCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCTTTTGGCGACCACCAAAAACAGCTTCCAACTATAGTCATCGTCATACTTGCTCTGTTTGTTGGGTTCTTCTTCACTTTTAGTTTCTACATCATTATCGTAAAATGCCAAGCTTGGCGTAGCGGCTCCGGCAACCAAGGGGCGGAGGCGTCGCAATTGAACGGCGAAGATGGAGAATTTCTAAACGAGAATCAAGTCGATCATCCCATTTGGTTCATAACCACCGTCGGGCTGCAACAATCGATCATCAACTCAATCACGGTTTGCAAATACAAGAAAGGTGAGGGCTTGATCGAAGGAACAGTTTGCTCTGTTTGTTTGAATGAATTTCAAGAAGACGAAATGCTCCGGCTGTTACCCAAATGTAGCCACGCGTTTCATATTGGGTGCGTTGATACTTGGCTGAGGTCTCATACCACTTGTCCACTCTGTCGGGCCCATATTCTTACTGATTTTCCGACCTCCAACGCCGCGAGACCGCCGAATTCGGGTCATTTGAATCAAAACGAAGCTAATTTGGGTGTAATTCAGGAGACCCAGATGGAGAATTTGGAGGGGGAAGAACAGAGTGCTGTCTCCGGCGGCGGCGGCGTTGAAAACAGAGGAGATGCAGTTGATGAACAGAGAGACATTGGGGTTCCTCAGATTGGGGAGATTGCTCCAAAAGAAGGGGTTTTTGAATCCGATGATTCTAAAATGGAAGTAACTGAAACAACGATGAACTGTTCTTCTGCAACATGA

Protein sequence

MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYFSPPPPPPPLPPFGDHQKQLPTIVIVILALFVGFFFTFSFYIIIVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIQETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIGVPQIGEIAPKEGVFESDDSKMEVTETTMNCSSAT

Homology

[Close]

BLAST of Carg08206 vs. NCBI nr
Match: XP_022962175.1 (RING-H2 finger protein ATL54-like [Cucurbita moschata])

HSP 1 Score: 491.5 bits (1264), Expect = 2.0e-135
Identity = 286/298 (95.97%), Postives = 288/298 (96.64%), Query Frame = 0


Query: 1   MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYXXXXXXXXXXXXXXXXXXX 60
           MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFY     XXXXXXXXXXXXXX
Sbjct: 1   MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFY-FSPPXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDH 120
           XXXXXXXXXXXXXXXXXXXXXXXXX  CQAWRSGSGNQGAEASQLNGEDGEFLNENQVDH
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDH 120

Query: 121 PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHI 180
           PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHI
Sbjct: 121 PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHI 180

Query: 181 GCVDTWLRSHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIQETQMENLEGEE 240
           GCVDTWLR+HTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVI+ETQMENLEGEE
Sbjct: 181 GCVDTWLRTHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIEETQMENLEGEE 240

Query: 241 QSAVSGGGGVENRGDAVDEQRDIGVPQIGEIAPKEGVFESDDSKMEVTETTMNCSSAT 299
           QSAVSGGGGVENRGDAV EQRDIGVPQIGEI PKEGVFESDDSKMEVTET MNCSSAT
Sbjct: 241 QSAVSGGGGVENRGDAVYEQRDIGVPQIGEIVPKEGVFESDDSKMEVTETMMNCSSAT 297

[Close]

BLAST of Carg08206 vs. NCBI nr
Match: XP_023546737.1 (RING-H2 finger protein ATL54-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 481.5 bits (1238), Expect = 2.1e-132
Identity = 282/298 (94.63%), Postives = 286/298 (95.97%), Query Frame = 0


Query: 1   MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYXXXXXXXXXXXXXXXXXXX 60
           MAVGITRKLFPVA GTHQQSFNCSACPYDCP DCLDLPDFY   XXXXXXXXXXXXXXXX
Sbjct: 1   MAVGITRKLFPVATGTHQQSFNCSACPYDCPLDCLDLPDFY---XXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDH 120
           XXXXXXXXXXXXXXXXXXXXXXXXXVKCQAWRSGSGNQGAE SQL+GEDGEFLNENQVDH
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDH 120

Query: 121 PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHI 180
           PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDE+LRLLPKCSHAFHI
Sbjct: 121 PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHI 180

Query: 181 GCVDTWLRSHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIQETQMENLEGEE 240
           GCVDTWLR+HTTCPLCRAHILTDFPTSN ARPPNSGHLNQNEANL VI+ETQMENLEGEE
Sbjct: 181 GCVDTWLRTHTTCPLCRAHILTDFPTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEE 240

Query: 241 QSAVSGGGGVENRGDAVDEQRDIGVPQIGEIAPKEGVFESDDSKMEVTETTMNCSSAT 299
           QSAVSGGGGVENRGDAVDEQRDIGVP IGEI PKEGVFESDDSKMEV ET MNCSSAT
Sbjct: 241 QSAVSGGGGVENRGDAVDEQRDIGVPPIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 295

[Close]

BLAST of Carg08206 vs. NCBI nr
Match: XP_022997232.1 (RING-H2 finger protein ATL54-like [Cucurbita maxima])

HSP 1 Score: 474.9 bits (1221), Expect = 2.0e-130
Identity = 240/298 (80.54%), Postives = 245/298 (82.21%), Query Frame = 0


Query: 1   MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYXXXXXXXXXXXXXXXXXXX 60
           MAVGITRKLFPV  GTHQQSFNCS CPYDCPFDCLDLPDFY                   
Sbjct: 1   MAVGITRKLFPVETGTHQQSFNCSGCPYDCPFDCLDLPDFY------FSPPPPFGDHQKQ 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDH 120
                  XX                VK QAWRSGSGNQGAEASQL+GEDGEFLNENQVDH
Sbjct: 61  LPTIVIVXXALFVGFFFTFSFYIIIVKWQAWRSGSGNQGAEASQLDGEDGEFLNENQVDH 120

Query: 121 PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHI 180
           PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHI
Sbjct: 121 PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHI 180

Query: 181 GCVDTWLRSHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIQETQMENLEGEE 240
           GCVDTWLR+HTTCPLCRAHILTDF TSN  RPPNSGH+NQNEANL VI+ETQMENLEGEE
Sbjct: 181 GCVDTWLRTHTTCPLCRAHILTDFATSNFPRPPNSGHVNQNEANLAVIEETQMENLEGEE 240

Query: 241 QSAVSGGGGVENRGDAVDEQRDIGVPQIGEIAPKEGVFESDDSKMEVTETTMNCSSAT 299
           QSAVSGGGGVENRGDAVDEQRD+GVPQIGEI PKEGVFESDDSKMEV ET MNCSSAT
Sbjct: 241 QSAVSGGGGVENRGDAVDEQRDVGVPQIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 292

[Close]

BLAST of Carg08206 vs. NCBI nr
Match: XP_008444871.1 (PREDICTED: RING-H2 finger protein ATL54-like [Cucumis melo])

HSP 1 Score: 322.8 bits (826), Expect = 1.2e-84
Identity = 211/303 (69.64%), Postives = 232/303 (76.57%), Query Frame = 0


Query: 1   MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYXXXXXXXXXXXXXXXXXXX 60
           MAV  +RKLFPVA GT Q + NCSACPY         PD Y     XXXXXXXXXXXXXX
Sbjct: 1   MAVTHSRKLFPVATGTTQPTTNCSACPYXXXXXXYGFPDLY----FXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDH 120
           XXXXXXXXXXXXXXXXXXXXX    VKC++W SGSGN+GAEA Q +G +GEF+NENQVDH
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXYIIVVKCRSWYSGSGNEGAEALQSDGGEGEFMNENQVDH 120

Query: 121 PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHI 180
           PIWFITT GLQQS+INSITVCKYKK EGLIEGT CSVCL+EFQEDEMLRLLPKCSHAFHI
Sbjct: 121 PIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHI 180

Query: 181 GCVDTWLRSHTTCPLCRAHILTDFPT--SNAARPPNSGHLNQNEANLGVIQETQMENLEG 240
           GCVDTWLR+HTTCPLCRAHILTDF T  SN+ RPPN G LNQNE NLG+ ++TQMEN   
Sbjct: 181 GCVDTWLRTHTTCPLCRAHILTDFTTSNSNSIRPPNLGPLNQNEGNLGLNEDTQMENENI 240

Query: 241 EEQSAVSGGGGV--------ENRGDAVDEQRDIGVPQIGEIAPKEGVFESDDSKMEVTET 294
             ++     GGV        ENRGD VDEQR     ++ EI  KEG FESDDSK+E  E+
Sbjct: 241 NGEAVRENEGGVVSISSESSENRGDVVDEQR-----EVEEIVQKEGNFESDDSKVEGNES 294

[Close]

BLAST of Carg08206 vs. NCBI nr
Match: XP_011649673.1 (PREDICTED: RING-H2 finger protein ATL54-like [Cucumis sativus] >KGN62717.1 hypothetical protein Csa_2G369190 [Cucumis sativus])

HSP 1 Score: 319.3 bits (817), Expect = 1.4e-83
Identity = 212/301 (70.43%), Postives = 234/301 (77.74%), Query Frame = 0


Query: 1   MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYXXXXXXXXXXXXXXXXXXX 60
           MAV ++RKLFPVA GT   + NCSACPYD        PD Y     XXXXXXXXXXXXXX
Sbjct: 1   MAVTLSRKLFPVATGTALPTTNCSACPYDXXXXXYGFPDLY----FXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDH 120
           XXXXXXXXXXXXXXXXXXXXXXXXXVKC++W SGS N+GAEA Q +G +GEF+NENQVDH
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXVKCRSWYSGSANEGAEALQSDGGEGEFMNENQVDH 120

Query: 121 PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHI 180
           PIWFITT GLQQS+INSITVCKYKK EGLIEGT CSVCL+EFQEDEMLRLLPKCSHAFHI
Sbjct: 121 PIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHI 180

Query: 181 GCVDTWLRSHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIQETQMENLEGEE 240
           GCVDTWLR+HTTCPLCRAHILTDF T N+ RPPN G LNQNE NLG+ ++TQM       
Sbjct: 181 GCVDTWLRTHTTCPLCRAHILTDFTTPNSVRPPNIGPLNQNEGNLGLNEDTQMXXXXXXX 240

Query: 241 QSA-VSGGGGV-------ENRGDAVDEQRDIGVPQIGEIAPKEGVFESDDSKMEVTETTM 294
            +   + GGGV       ENRGDAVDEQR     ++ EI  KEG FESDDSK+E  E+  
Sbjct: 241 XAVRENEGGGVSISSESSENRGDAVDEQR-----EVEEIVQKEGNFESDDSKVEGNESMR 292

[Close]

BLAST of Carg08206 vs. TAIR10
Match: AT1G72220.1 (RING/U-box superfamily protein)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-37
Identity = 114/272 (41.91%), Postives = 137/272 (50.37%), Query Frame = 0


Query: 7   RKLFPVAAGTHQQSFNCS--ACPYDCPFDCLDLPDFYXXXXXXXXXXXXXXXXXXXXXXX 66
           RKLFP  A    ++ +CS   C   CP++C   PD+Y            XXXXXXXXXXX
Sbjct: 7   RKLFPTLASETNKTLDCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSXXXXXXXXXXX 66

Query: 67  XXXXXXXXXXXXXXXXXXXXXV----------------KCQAWRSGSGNQGAEASQLNGE 126
           X                    +                K  +      NQG   S     
Sbjct: 67  XAVYLPSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDN 126

Query: 127 D----GEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQE 186
           D     EF +  QVDHPIW I T GLQQSIINSIT+C YK+G+GLIE T C VCLNEF+E
Sbjct: 127 DTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEE 186

Query: 187 DEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEAN 246
           DE LRLLPKC+HAFHI C+DTWL SHT CPLCRA I     T+    P  SG +      
Sbjct: 187 DESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTT----PRYSGPVEVTPGG 246

Query: 247 LGVIQETQMENLEGEEQSAVSGGGGVENRGDA 257
            G    + +EN   +E+      G +ENR D+
Sbjct: 247 SG----SHLENDGVDEED----HGEIENRVDS 266

[Close]

BLAST of Carg08206 vs. TAIR10
Match: AT4G33565.1 (RING/U-box superfamily protein)

HSP 1 Score: 139.0 bits (349), Expect = 4.6e-33
Identity = 57/84 (67.86%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 118 VDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHA 177
           VDHPIW I T+GL  ++I+SI VC+Y K +G++EGT CSVCL+EF+E+E LRLLPKC HA
Sbjct: 180 VDHPIWHIRTIGLNPTVISSIKVCQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHA 239

Query: 178 FHIGCVDTWLRSHTTCPLCRAHIL 202
           FH+ C+DTWLRSHT CPLCRA I+
Sbjct: 240 FHLYCIDTWLRSHTNCPLCRAPIV 263

[Close]

BLAST of Carg08206 vs. TAIR10
Match: AT5G10380.1 (RING/U-box superfamily protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-32
Identity = 59/82 (71.95%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 120 HPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFH 179
           H +W I TVGL +S INSITV  +KKGEG+I+GT CSVCLNEF+EDE LRLLPKCSHAFH
Sbjct: 100 HHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFH 159

Query: 180 IGCVDTWLRSHTTCPLCRAHIL 202
           + C+DTWL SH  CPLCRA +L
Sbjct: 160 LNCIDTWLLSHKNCPLCRAPVL 181

[Close]

BLAST of Carg08206 vs. TAIR10
Match: AT3G03550.1 (RING/U-box superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-26
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 129 GLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLR 188
           GL +S+I SITV KY+K +G +E + CSVCL+EFQE+E LRLLPKC+HAFH+ C+DTWL+
Sbjct: 133 GLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLK 192

Query: 189 SHTTCPLCRAHILT 203
           SH+ CPLCRA I+T
Sbjct: 193 SHSNCPLCRAFIVT 206

[Close]

BLAST of Carg08206 vs. TAIR10
Match: AT5G17600.1 (RING/U-box superfamily protein)

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-26
Identity = 57/115 (49.57%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 129 GLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLR 188
           GL +S+I SITV KYK G+G ++G+ CSVCL+EF+E+E LRLLPKC+HAFH+ C+DTWL+
Sbjct: 116 GLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 175

Query: 189 SHTTCPLCRAHIL-TDFPTSNAARPPNSGHLNQNEA--NLGVIQETQMENLEGEE 241
           SH+ CPLCRA +   + PT++  +  +    NQ+ +    G + E  + NL G E
Sbjct: 176 SHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEINL-NLAGYE 229

[Close]

BLAST of Carg08206 vs. Swiss-Prot
Match: sp|Q8LFY8|ATL54_ARATH (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 3.3e-36
Identity = 114/272 (41.91%), Postives = 137/272 (50.37%), Query Frame = 0


Query: 7   RKLFPVAAGTHQQSFNCS--ACPYDCPFDCLDLPDFYXXXXXXXXXXXXXXXXXXXXXXX 66
           RKLFP  A    ++ +CS   C   CP++C   PD+Y            XXXXXXXXXXX
Sbjct: 7   RKLFPTLASETNKTLDCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSXXXXXXXXXXX 66

Query: 67  XXXXXXXXXXXXXXXXXXXXXV----------------KCQAWRSGSGNQGAEASQLNGE 126
           X                    +                K  +      NQG   S     
Sbjct: 67  XAVYLPSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDN 126

Query: 127 D----GEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQE 186
           D     EF +  QVDHPIW I T GLQQSIINSIT+C YK+G+GLIE T C VCLNEF+E
Sbjct: 127 DTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEE 186

Query: 187 DEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEAN 246
           DE LRLLPKC+HAFHI C+DTWL SHT CPLCRA I     T+    P  SG +      
Sbjct: 187 DESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTT----PRYSGPVEVTPGG 246

Query: 247 LGVIQETQMENLEGEEQSAVSGGGGVENRGDA 257
            G    + +EN   +E+      G +ENR D+
Sbjct: 247 SG----SHLENDGVDEED----HGEIENRVDS 266

[Close]

BLAST of Carg08206 vs. Swiss-Prot
Match: sp|Q9LX93|ATL55_ARATH (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.2e-31
Identity = 59/82 (71.95%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 120 HPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFH 179
           H +W I TVGL +S INSITV  +KKGEG+I+GT CSVCLNEF+EDE LRLLPKCSHAFH
Sbjct: 100 HHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFH 159

Query: 180 IGCVDTWLRSHTTCPLCRAHIL 202
           + C+DTWL SH  CPLCRA +L
Sbjct: 160 LNCIDTWLLSHKNCPLCRAPVL 181

[Close]

BLAST of Carg08206 vs. Swiss-Prot
Match: sp|Q7XLY8|ATL41_ORYSJ (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-26
Identity = 74/185 (40.00%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 120 HPIWFIT-TVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAF 179
           H  W ++   GL +++IN ITVCKY++G+G +  T CSVCL EF + E LRLLP+CSHAF
Sbjct: 121 HESWNVSPPSGLDETLINKITVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAF 180

Query: 180 HIGCVDTWLRSHTTCPLCRAHIL-----TDFPTSNAARPPNSGHLNQNEANLGVIQETQM 239
           H  C+DTWL+SH+ CPLCRA+I         P      P  +G  N +E    V+    +
Sbjct: 181 HQQCIDTWLKSHSNCPLCRANITFVTVGLASPEPEGCAPGETGGDNTHEV---VVVMDGL 240

Query: 240 ENLEGEEQSAVSGGGGVENRGDAVDEQRDI----GVPQIGE--IAPKEGVFESD---DSK 290
           ENL  E+Q AVS     ++  DA D    +    G  +I E    PK G    D   D++
Sbjct: 241 ENLCEEQQEAVSRASTADDDHDAKDVAEGMEEANGAAEIREEGSPPKRGASSFDLHRDNR 300

[Close]

BLAST of Carg08206 vs. Swiss-Prot
Match: sp|Q9SRQ8|ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-25
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 129 GLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLR 188
           GL +S+I SITV KY+K +G +E + CSVCL+EFQE+E LRLLPKC+HAFH+ C+DTWL+
Sbjct: 133 GLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLK 192

Query: 189 SHTTCPLCRAHILT 203
           SH+ CPLCRA I+T
Sbjct: 193 SHSNCPLCRAFIVT 206

[Close]

BLAST of Carg08206 vs. Swiss-Prot
Match: sp|Q9LF64|ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-25
Identity = 57/115 (49.57%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 129 GLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLR 188
           GL +S+I SITV KYK G+G ++G+ CSVCL+EF+E+E LRLLPKC+HAFH+ C+DTWL+
Sbjct: 116 GLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 175

Query: 189 SHTTCPLCRAHIL-TDFPTSNAARPPNSGHLNQNEA--NLGVIQETQMENLEGEE 241
           SH+ CPLCRA +   + PT++  +  +    NQ+ +    G + E  + NL G E
Sbjct: 176 SHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEINL-NLAGYE 229

[Close]

BLAST of Carg08206 vs. TrEMBL
Match: tr|A0A1S3BAW8|A0A1S3BAW8_CUCME (RING-H2 finger protein ATL54-like OS=Cucumis melo OX=3656 GN=LOC103488086 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 8.2e-85
Identity = 211/303 (69.64%), Postives = 232/303 (76.57%), Query Frame = 0


Query: 1   MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYXXXXXXXXXXXXXXXXXXX 60
           MAV  +RKLFPVA GT Q + NCSACPY         PD Y     XXXXXXXXXXXXXX
Sbjct: 1   MAVTHSRKLFPVATGTTQPTTNCSACPYXXXXXXYGFPDLY----FXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDH 120
           XXXXXXXXXXXXXXXXXXXXX    VKC++W SGSGN+GAEA Q +G +GEF+NENQVDH
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXYIIVVKCRSWYSGSGNEGAEALQSDGGEGEFMNENQVDH 120

Query: 121 PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHI 180
           PIWFITT GLQQS+INSITVCKYKK EGLIEGT CSVCL+EFQEDEMLRLLPKCSHAFHI
Sbjct: 121 PIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHI 180

Query: 181 GCVDTWLRSHTTCPLCRAHILTDFPT--SNAARPPNSGHLNQNEANLGVIQETQMENLEG 240
           GCVDTWLR+HTTCPLCRAHILTDF T  SN+ RPPN G LNQNE NLG+ ++TQMEN   
Sbjct: 181 GCVDTWLRTHTTCPLCRAHILTDFTTSNSNSIRPPNLGPLNQNEGNLGLNEDTQMENENI 240

Query: 241 EEQSAVSGGGGV--------ENRGDAVDEQRDIGVPQIGEIAPKEGVFESDDSKMEVTET 294
             ++     GGV        ENRGD VDEQR     ++ EI  KEG FESDDSK+E  E+
Sbjct: 241 NGEAVRENEGGVVSISSESSENRGDVVDEQR-----EVEEIVQKEGNFESDDSKVEGNES 294

[Close]

BLAST of Carg08206 vs. TrEMBL
Match: tr|A0A0A0LPJ4|A0A0A0LPJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369190 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.1e-84
Identity = 212/301 (70.43%), Postives = 234/301 (77.74%), Query Frame = 0


Query: 1   MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYXXXXXXXXXXXXXXXXXXX 60
           MAV ++RKLFPVA GT   + NCSACPYD        PD Y     XXXXXXXXXXXXXX
Sbjct: 1   MAVTLSRKLFPVATGTALPTTNCSACPYDXXXXXYGFPDLY----FXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDH 120
           XXXXXXXXXXXXXXXXXXXXXXXXXVKC++W SGS N+GAEA Q +G +GEF+NENQVDH
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXVKCRSWYSGSANEGAEALQSDGGEGEFMNENQVDH 120

Query: 121 PIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHI 180
           PIWFITT GLQQS+INSITVCKYKK EGLIEGT CSVCL+EFQEDEMLRLLPKCSHAFHI
Sbjct: 121 PIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHI 180

Query: 181 GCVDTWLRSHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIQETQMENLEGEE 240
           GCVDTWLR+HTTCPLCRAHILTDF T N+ RPPN G LNQNE NLG+ ++TQM       
Sbjct: 181 GCVDTWLRTHTTCPLCRAHILTDFTTPNSVRPPNIGPLNQNEGNLGLNEDTQMXXXXXXX 240

Query: 241 QSA-VSGGGGV-------ENRGDAVDEQRDIGVPQIGEIAPKEGVFESDDSKMEVTETTM 294
            +   + GGGV       ENRGDAVDEQR     ++ EI  KEG FESDDSK+E  E+  
Sbjct: 241 XAVRENEGGGVSISSESSENRGDAVDEQR-----EVEEIVQKEGNFESDDSKVEGNESMR 292

[Close]

BLAST of Carg08206 vs. TrEMBL
Match: tr|B9RJR5|B9RJR5_RICCO (Ring finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1037570 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.3e-49
Identity = 164/269 (60.97%), Postives = 185/269 (68.77%), Query Frame = 0


Query: 7   RKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYXXXXXXXXXXXXXXXXXXXXXXXXX 66
           RKLFP  + T+Q       C   CP++C    D+ XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 4   RKLFPSLSTTNQTVDCPDFCDPACPYNCYPYADYXXXXXXXXXXXXXXXXXXXXXXXXXX 63

Query: 67  XXXXXXXXXXXXXXXXXXXVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFIT 126
           XXXXXXXXXXXXXXXXXXX  C  W S S N  A  S+ +  D EFL+ENQVDHPIWFIT
Sbjct: 64  XXXXXXXXXXXXXXXXXXXXSCPGWCS-SRNNRAPQSEADNTDEEFLDENQVDHPIWFIT 123

Query: 127 TVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTW 186
           T GLQQSIINSITVCKYKKGEGLIEGT CSVCL+EFQ+DE LRLLPKC+HAFHI C+DTW
Sbjct: 124 TAGLQQSIINSITVCKYKKGEGLIEGTECSVCLSEFQQDETLRLLPKCNHAFHISCIDTW 183

Query: 187 LRSHTTCPLCRAHILTD-FPTSNAARPPNSGHLNQNEANLGVIQETQMENLE-------- 246
           LRSHT CPLCRAHI+ D  PT   +       +NQN  NL  I  TQM+N E        
Sbjct: 184 LRSHTNCPLCRAHIVHDPVPTPLIS-------INQNPDNLNTIISTQMDNSEIDGELSNT 243

Query: 247 ---GEEQSAVSGGGGVENRGDAVDEQRDI 264
               E ++A   GG   + G     + D+
Sbjct: 244 QERNENRAAADEGGETVHVGSERTLKEDV 264

[Close]

BLAST of Carg08206 vs. TrEMBL
Match: tr|A0A061FG67|A0A061FG67_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_034836 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 3.1e-47
Identity = 164/289 (56.75%), Postives = 195/289 (67.47%), Query Frame = 0


Query: 7   RKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYXXXXXXXXXXXXXXXXXXXXXXXXX 66
           RKLFP    T+Q       C   CP++C   P + XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 4   RKLFPTFTETNQTVDCHGFCDPACPYNCYPYPGYXXXXXXXXXXXXXXXXXXXXXXXXXX 63

Query: 67  XXXXXXXXXXXXXXXXXXXVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFIT 126
           XXXXXXXXXXXXXXXXX       W   S N     +Q +G D EFL+EN+VDHPIWFIT
Sbjct: 64  XXXXXXXXXXXXXXXXXKSCFGLCW---SRNNRQPQAQTDGSDEEFLDENRVDHPIWFIT 123

Query: 127 TVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTW 186
           TVGLQQSIINSITVCKYKKGEGLIEGT CSVCLNEFQE+E +RLLPKC+HAFHI C+DTW
Sbjct: 124 TVGLQQSIINSITVCKYKKGEGLIEGTECSVCLNEFQEEETVRLLPKCNHAFHISCIDTW 183

Query: 187 LRSHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIQETQMENLE-GEEQSAVS 246
           L +HT CPLCRAHI+ D        PP S   +QN  N+ ++ + ++EN E G E S+ +
Sbjct: 184 LGAHTNCPLCRAHIVFD----AVCAPPTSA--DQNSNNMELVADNRIENSEIGGELSSQN 243

Query: 247 GGGGVE-----NRGDAVDEQRDIGVPQIGEIAPKEGVFESDDSKMEVTE 290
            G   E      R DA  E  +    +I     KEGV+  ++  +EV++
Sbjct: 244 QGRNSELCENRARADASSELPEANDQRI----LKEGVYYEENGTLEVSD 279

[Close]

BLAST of Carg08206 vs. TrEMBL
Match: tr|A0A1R3K2R7|A0A1R3K2R7_9ROSI (Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_11991 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 4.0e-47
Identity = 163/256 (63.67%), Postives = 187/256 (73.05%), Query Frame = 0


Query: 7   RKLFPVAAGTHQQSFNCSA-CPYDCPFDCLDLPDF--YXXXXXXXXXXXXXXXXXXXXXX 66
           RKLFP  A  +Q + +CS  C   CP++C   PD+   XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 8   RKLFPTLAEANQTTDDCSGFCDPACPYNCYPFPDYXXXXXXXXXXXXXXXXXXXXXXXXX 67

Query: 67  XXXXXXXXXXXXXXXXXXXXXXVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIW 126
           XXXXXXXXXXXXXXXXXXXXXX  C  W     +Q A+  Q  G D EFL+EN+VDHPIW
Sbjct: 68  XXXXXXXXXXXXXXXXXXXXXXXXCFGWCCSRQSQ-AQTDQ--GSDEEFLDENRVDHPIW 127

Query: 127 FITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCV 186
           FITTVGLQQSIINSITVCKYKKGEGLIEGT CSVCLNEFQE E +RLLPKC+HAFHI C+
Sbjct: 128 FITTVGLQQSIINSITVCKYKKGEGLIEGTECSVCLNEFQEGETVRLLPKCNHAFHISCI 187

Query: 187 DTWLRSHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIQETQMENLEGEEQSA 246
           DTWLR+HT CPLCRAHI+ D   S  A  P+S   +QN  N+ +I+ ++     G E S 
Sbjct: 188 DTWLRAHTNCPLCRAHIVFD---SVCAPTPSS---DQNSDNIELIENSE----NGGEMSV 247

Query: 247 VSGGGGVENRGDAVDE 260
            + G   ENR  A D+
Sbjct: 248 ENQGS--ENRASAEDQ 248

The following BLAST results are available for this feature:

BLAST of Carg08206 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962175.1	2.0e-135	95.97	RING-H2 finger protein ATL54-like [Cucurbita moschata]	[more]
XP_023546737.1	2.1e-132	94.63	RING-H2 finger protein ATL54-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997232.1	2.0e-130	80.54	RING-H2 finger protein ATL54-like [Cucurbita maxima]	[more]
XP_008444871.1	1.2e-84	69.64	PREDICTED: RING-H2 finger protein ATL54-like [Cucumis melo]	[more]
XP_011649673.1	1.4e-83	70.43	PREDICTED: RING-H2 finger protein ATL54-like [Cucumis sativus] >KGN62717.1 hypot...	[more]

BLAST of Carg08206 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72220.1	1.8e-37	41.91	RING/U-box superfamily protein	[more]
AT4G33565.1	4.6e-33	67.86	RING/U-box superfamily protein	[more]
AT5G10380.1	1.8e-32	71.95	RING/U-box superfamily protein	[more]
AT3G03550.1	1.1e-26	66.22	RING/U-box superfamily protein	[more]
AT5G17600.1	1.4e-26	49.57	RING/U-box superfamily protein	[more]

BLAST of Carg08206 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LFY8\|ATL54_ARATH	3.3e-36	41.91	RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2	[more]
sp\|Q9LX93\|ATL55_ARATH	3.2e-31	71.95	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
sp\|Q7XLY8\|ATL41_ORYSJ	1.4e-26	40.00	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
sp\|Q9SRQ8\|ATL51_ARATH	2.0e-25	66.22	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
sp\|Q9LF64\|ATL52_ARATH	2.6e-25	49.57	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]

BLAST of Carg08206 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BAW8\|A0A1S3BAW8_CUCME	8.2e-85	69.64	RING-H2 finger protein ATL54-like OS=Cucumis melo OX=3656 GN=LOC103488086 PE=4 S...	[more]
tr\|A0A0A0LPJ4\|A0A0A0LPJ4_CUCSA	9.1e-84	70.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369190 PE=4 SV=1	[more]
tr\|B9RJR5\|B9RJR5_RICCO	4.3e-49	60.97	Ring finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1037570 PE=4 S...	[more]
tr\|A0A061FG67\|A0A061FG67_THECC	3.1e-47	56.75	RING/U-box superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_03483...	[more]
tr\|A0A1R3K2R7\|A0A1R3K2R7_9ROSI	4.0e-47	63.67	Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_11991 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08206-RA	Carg08206-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 155..196 e-value: 7.1E-7 score: 38.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 154..197 e-value: 3.5E-13 score: 49.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 155..197 score: 12.814
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 129..203 e-value: 1.8E-20 score: 73.9
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 7..246
None	No IPR available	PANTHER	PTHR14155:SF311	SUBFAMILY NOT NAMED	coord: 7..246
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 154..197 e-value: 3.5917E-17 score: 72.3345
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 148..206

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08206	Cla022118	Watermelon (97103) v1	carwmB0058
Carg08206	Csa2G369190	Cucumber (Chinese Long) v2	carcuB0059
Carg08206	MELO3C007735	Melon (DHL92) v3.5.1	carmeB0063
Carg08206	MELO3C011051	Melon (DHL92) v3.5.1	carmeB0058
Carg08206	ClCG08G011350	Watermelon (Charleston Gray)	carwcgB0063
Carg08206	CSPI02G21270	Wild cucumber (PI 183967)	carcpiB0063
Carg08206	Cucsa.160240	Cucumber (Gy14) v1	carcgyB0066
Carg08206	Cucsa.104190	Cucumber (Gy14) v1	carcgyB0065
Carg08206	CmaCh03G008220	Cucurbita maxima (Rimu)	carcmaB0082
Carg08206	CmoCh05G005420	Cucurbita moschata (Rifu)	carcmoB0087
Carg08206	Lsi08G009890	Bottle gourd (USVL1VR-Ls)	carlsiB056
Carg08206	Cp4.1LG11g04460	Cucurbita pepo (Zucchini)	carcpeB0079
Carg08206	CsGy2G020970	Cucumber (Gy14) v2	carcgybB0060
Carg08206	MELO3C007735.2	Melon (DHL92) v3.6.1	carmedB0063
Carg08206	MELO3C011051.2	Melon (DHL92) v3.6.1	carmedB0059
Carg08206	CsaV3_2G029930	Cucumber (Chinese Long) v3	carcucB0065
Carg08206	Cla97C01G017940	Watermelon (97103) v2	carwmbB0056
Carg08206	Cla97C08G154340	Watermelon (97103) v2	carwmbB0061
Carg08206	Bhi04G000652	Wax gourd	carwgoB0067
Carg08206	Bhi03G000877	Wax gourd	carwgoB0071

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08206	Cucurbita pepo (Zucchini)	carcpeB0078
Carg08206	Cucurbita pepo (Zucchini)	carcpeB0085
Carg08206	Wild cucumber (PI 183967)	carcpiB0065
Carg08206	Wild cucumber (PI 183967)	carcpiB0067
Carg08206	Cucumber (Chinese Long) v2	carcuB0061
Carg08206	Cucumber (Chinese Long) v2	carcuB0063
Carg08206	Cucumber (Chinese Long) v3	carcucB0067
Carg08206	Cucumber (Chinese Long) v3	carcucB0069
Carg08206	Bottle gourd (USVL1VR-Ls)	carlsiB053
Carg08206	Bottle gourd (USVL1VR-Ls)	carlsiB054
Carg08206	Melon (DHL92) v3.5.1	carmeB0061
Carg08206	Melon (DHL92) v3.6.1	carmedB0061
Carg08206	Watermelon (Charleston Gray)	carwcgB0059
Carg08206	Watermelon (Charleston Gray)	carwcgB0061
Carg08206	Watermelon (97103) v1	carwmB0059
Carg08206	Watermelon (97103) v1	carwmB0060
Carg08206	Watermelon (97103) v2	carwmbB0057
Carg08206	Wax gourd	carwgoB0072
Carg08206	Silver-seed gourd	carcarB064
Carg08206	Silver-seed gourd	carcarB066
Carg08206	Cucumber (Gy14) v2	carcgybB0062
Carg08206	Cucumber (Gy14) v2	carcgybB0063
Carg08206	Cucumber (Gy14) v1	carcgyB0067
Carg08206	Cucurbita maxima (Rimu)	carcmaB0071
Carg08206	Cucurbita maxima (Rimu)	carcmaB0083
Carg08206	Cucurbita moschata (Rifu)	carcmoB0075
Carg08206	Cucurbita moschata (Rifu)	carcmoB0086