CmoCh05G004990 (gene) Cucurbita moschata (Rifu)

NameCmoCh05G004990
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr05 : 2402096 .. 2402329 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCCGAAAATGGCGGTTGAACTCTTCTGTCAAATGCTAGTAGAAGGCATAAAACCAAGTTCAGACACCTTTTCGATACTTTTCCCTGCCTTGGCTATGACAGATTTGATAATGAGAAGACAGCTACATTCCTATATCATCAAGAGTCAACTTGTCGAATCGTGTGATGATCTCGCAAATGTCTTAAGTTCAAACGAGTTTGATGGAGGAGTTCTGCTTCATGGAACATAA

mRNA sequence

ATGCAGCCGAAAATGGCGGTTGAACTCTTCTGTCAAATGCTAGTAGAAGGCATAAAACCAAGTTCAGACACCTTTTCGATACTTTTCCCTGCCTTGGCTATGACAGATTTGATAATGAGAAGACAGCTACATTCCTATATCATCAAGAGTCAACTTGTCGAATCGTGTGATGATCTCGCAAATGTCTTAAGTTCAAACGAGTTTGATGGAGGAGTTCTGCTTCATGGAACATAA

Coding sequence (CDS)

ATGCAGCCGAAAATGGCGGTTGAACTCTTCTGTCAAATGCTAGTAGAAGGCATAAAACCAAGTTCAGACACCTTTTCGATACTTTTCCCTGCCTTGGCTATGACAGATTTGATAATGAGAAGACAGCTACATTCCTATATCATCAAGAGTCAACTTGTCGAATCGTGTGATGATCTCGCAAATGTCTTAAGTTCAAACGAGTTTGATGGAGGAGTTCTGCTTCATGGAACATAA
BLAST of CmoCh05G004990 vs. TrEMBL
Match: A0A0A0KFW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399730 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-21
Identity = 60/77 (77.92%), Postives = 65/77 (84.42%), Query Frame = 1

Query: 1   MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDL 60
           MQ KMAVELFCQMLVEGIKPSS TFSIL PAL+   DL +RRQLHSYIIKSQ +ES +DL
Sbjct: 600 MQHKMAVELFCQMLVEGIKPSSATFSILLPALSERADLKVRRQLHSYIIKSQHLESRNDL 659

Query: 61  ANVLSSNEFDGGVLLHG 77
           ANVLSS+  D GVLLHG
Sbjct: 660 ANVLSSDNVDVGVLLHG 676

BLAST of CmoCh05G004990 vs. NCBI nr
Match: gi|449458139|ref|XP_004146805.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 4.9e-21
Identity = 60/77 (77.92%), Postives = 65/77 (84.42%), Query Frame = 1

Query: 1   MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDL 60
           MQ KMAVELFCQMLVEGIKPSS TFSIL PAL+   DL +RRQLHSYIIKSQ +ES +DL
Sbjct: 600 MQHKMAVELFCQMLVEGIKPSSATFSILLPALSERADLKVRRQLHSYIIKSQHLESRNDL 659

Query: 61  ANVLSSNEFDGGVLLHG 77
           ANVLSS+  D GVLLHG
Sbjct: 660 ANVLSSDNVDVGVLLHG 676

BLAST of CmoCh05G004990 vs. NCBI nr
Match: gi|659089185|ref|XP_008445371.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 6.4e-21
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1

Query: 1   MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDL 60
           MQ ++AVELFCQMLVEGIKPSS TFSIL PAL+   DL +RRQLHSYIIKSQ +ES +DL
Sbjct: 598 MQHEVAVELFCQMLVEGIKPSSATFSILLPALSERADLKVRRQLHSYIIKSQHLESRNDL 657

Query: 61  ANVLSSNEFDGGVLLHG 77
           ANVLSS+ FD GVLLHG
Sbjct: 658 ANVLSSDNFDVGVLLHG 674

BLAST of CmoCh05G004990 vs. NCBI nr
Match: gi|1009140405|ref|XP_015887634.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1

Query: 1   MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDL 60
           MQP+ A++LF  ML EG++PSS TF +L PA   M  L   RQLH Y++KSQL ES + L
Sbjct: 219 MQPECALKLFRDMLAEGLEPSSSTFMVLLPACGDMAVLRSGRQLHGYMLKSQLDESNNTL 278

Query: 61  ANVL 64
           A  L
Sbjct: 279 AIAL 282

BLAST of CmoCh05G004990 vs. NCBI nr
Match: gi|1009136519|ref|XP_015885569.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Ziziphus jujuba])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1

Query: 1   MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDL 60
           MQP+ A++LF  ML EG++PSS TF +L PA   M  L   RQLH Y++KSQL ES + L
Sbjct: 613 MQPECALKLFRDMLAEGLEPSSSTFMVLLPACGDMAVLRSGRQLHGYMLKSQLDESNNTL 672

Query: 61  ANVL 64
           A  L
Sbjct: 673 AIAL 676

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KFW8_CUCSA3.4e-2177.92Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399730 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449458139|ref|XP_004146805.1|4.9e-2177.92PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis s... [more]
gi|659089185|ref|XP_008445371.1|6.4e-2176.62PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis m... [more]
gi|1009140405|ref|XP_015887634.1|2.6e-0653.13PREDICTED: pentatricopeptide repeat-containing protein At1g11290, chloroplastic-... [more]
gi|1009136519|ref|XP_015885569.1|2.6e-0653.13PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Ziziphus ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G004990.1CmoCh05G004990.1mRNA


The following gene(s) are paralogous to this gene:

None