CmoCh05G003050 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G003050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr05 : 1351227 .. 1351613 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAATCCAGCCGTTTCGATCAGGCAAAAATCAAACGGAGCAAACAGCTTCATCATTAACGTGGAGGATGATCAAGAGGATTTCAGAGGAGGAAGTCCCGGTGTAAGCATCTCTCCGGCGAGATTTCTCAGCCGGATCCGCCGGATTCTGATGCGATTCATGTTTTATTTTCCTTCTCGAGGTTCGTCGCCGTCATCGTCGTCGTCAATAATGGCGTCGAAGCGGAGAAATCTGGAGAAATTCGAGCCGCCGAAGACTTCCTGCAGTTCGAATTACTCGTCTTACTCGCATTACAACGAAGCTATTGCCGATTGCATCGAGTTCTTCAACAAGTCGTCGCAGGATCAAATCGGAATCTCCGATGCAAATGCGATGGTATGA

mRNA sequence

ATGGAGAAGAATCCAGCCGTTTCGATCAGGCAAAAATCAAACGGAGCAAACAGCTTCATCATTAACGTGGAGGATGATCAAGAGGATTTCAGAGGAGGAAGTCCCGGTGTAAGCATCTCTCCGGCGAGATTTCTCAGCCGGATCCGCCGGATTCTGATGCGATTCATGTTTTATTTTCCTTCTCGAGGTTCGTCGCCGTCATCGTCGTCGTCAATAATGGCGTCGAAGCGGAGAAATCTGGAGAAATTCGAGCCGCCGAAGACTTCCTGCAGTTCGAATTACTCGTCTTACTCGCATTACAACGAAGCTATTGCCGATTGCATCGAGTTCTTCAACAAGTCGTCGCAGGATCAAATCGGAATCTCCGATGCAAATGCGATGGTATGA

Coding sequence (CDS)

ATGGAGAAGAATCCAGCCGTTTCGATCAGGCAAAAATCAAACGGAGCAAACAGCTTCATCATTAACGTGGAGGATGATCAAGAGGATTTCAGAGGAGGAAGTCCCGGTGTAAGCATCTCTCCGGCGAGATTTCTCAGCCGGATCCGCCGGATTCTGATGCGATTCATGTTTTATTTTCCTTCTCGAGGTTCGTCGCCGTCATCGTCGTCGTCAATAATGGCGTCGAAGCGGAGAAATCTGGAGAAATTCGAGCCGCCGAAGACTTCCTGCAGTTCGAATTACTCGTCTTACTCGCATTACAACGAAGCTATTGCCGATTGCATCGAGTTCTTCAACAAGTCGTCGCAGGATCAAATCGGAATCTCCGATGCAAATGCGATGGTATGA

Homology

[Close]

BLAST of CmoCh05G003050 vs. TrEMBL
Match: A0A0A0LPF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368240 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-45
Identity = 96/131 (73.28%), Postives = 113/131 (86.26%), Query Frame = 1


Query: 3   KNPAVSIRQKSNGANSFIINVEDDQEDFRGGSPGVSISPARFLSRIRRILMRFMFYFPSR 62
           KNPAVS R KSNGANSF+++V+DDQ+D+RGGSP   ISPAR LSRIRR+ MRF+FY PSR
Sbjct: 2   KNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPSR 61

Query: 63  GSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG-- 122
           GS+ ++++++   K+RNLEKFEPPKTSCSS+YSSYSHYNEAIADCIEF NKSSQDQIG  
Sbjct: 62  GSAAAAAAAL---KQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVD 121

Query: 123 ---ISDANAMV 129
              ISDANAMV
Sbjct: 122 EGRISDANAMV 129

[Close]

BLAST of CmoCh05G003050 vs. TrEMBL
Match: A0A061FD82_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_034216 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-18
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 34  SPGVSISPARFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSN 93
           SP ++ S  +  +R R+ILMR +F  PS GSS +SS   MA K+ N ++F+PPKTSCSS 
Sbjct: 60  SPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSS---MAPKQTNCDRFDPPKTSCSSY 119

Query: 94  YSSYSHYNEAIADCIEFFNKSSQDQI 120
           YSS+SHY EAIADCIEFFNKSSQ+ I
Sbjct: 120 YSSHSHYTEAIADCIEFFNKSSQEGI 142

[Close]

BLAST of CmoCh05G003050 vs. TrEMBL
Match: A0A067HAL4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047366mg PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.7e-18
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 1


Query: 43  RFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNE 102
           +  +R R+ILMR +F FPS G+S S+SS+  ASK++  +K+EPPKTSCSS YSS+SHY+E
Sbjct: 2   KLFNRFRKILMRLLFSFPSHGTSASTSST--ASKQKACDKYEPPKTSCSSYYSSHSHYSE 61

Query: 103 AIADCIEFFNKSSQDQI 120
           AIADCIEFFNKSSQ+ I
Sbjct: 62  AIADCIEFFNKSSQEGI 76

[Close]

BLAST of CmoCh05G003050 vs. TrEMBL
Match: V4T5D5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003277mg PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.7e-18
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 1


Query: 43  RFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNE 102
           +  +R R+ILMR +F FPS G+S S+SS+  ASK++  +K+EPPKTSCSS YSS+SHY+E
Sbjct: 2   KLFNRFRKILMRLLFSFPSHGTSASTSST--ASKQKACDKYEPPKTSCSSYYSSHSHYSE 61

Query: 103 AIADCIEFFNKSSQDQI 120
           AIADCIEFFNKSSQ+ I
Sbjct: 62  AIADCIEFFNKSSQEGI 76

[Close]

BLAST of CmoCh05G003050 vs. TrEMBL
Match: A0A0D2U3A7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G004900 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.5e-17
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 1


Query: 8   SIRQKSNGAN-----SFIINVEDDQEDFRG-GSPGVSISPARFLSRIRRILMRFMFYFPS 67
           S++ K+ G +     SF+I V+D ++      SP ++ S  +  +R R++LMR +F    
Sbjct: 11  SVKAKNKGLSPITIMSFVIQVKDSEDRVNSVSSPKLNFSAMKLFNRFRKVLMRLVF---- 70

Query: 68  RGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIGI 124
             S  S+     A K +N E+FEPPKTSCSS YSS+SHY+EAIADCIEFFNKS+  Q GI
Sbjct: 71  --SGKSNMGGGGACKEKNCERFEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSAA-QEGI 125

[Close]

BLAST of CmoCh05G003050 vs. TAIR10
Match: AT1G75717.1 (AT1G75717.1 unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-09
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1


Query: 43  RFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNY-SSYSHYN 102
           +   ++ +ILMR + +     S     ++   S+  + E+FEPPK SCSS+Y SS+ HY+
Sbjct: 2   KLFHKLGKILMRLIDFTLHSSSRRQKKNN---SRSGDGERFEPPKISCSSSYYSSHVHYS 61

Query: 103 EAIADCIEFFNKSS 116
           EAIADCIEFFNKSS
Sbjct: 62  EAIADCIEFFNKSS 72

[Close]

BLAST of CmoCh05G003050 vs. NCBI nr
Match: gi|659088097|ref|XP_008444800.1| (PREDICTED: uncharacterized protein LOC103488039 [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 1.2e-45
Identity = 98/133 (73.68%), Postives = 115/133 (86.47%), Query Frame = 1


Query: 3   KNPAVSIRQKSNGANSFIINVEDDQEDFRGGSPGVSISPARFLSRIRRILMRFMFYFPSR 62
           KNPAVS R KSNGAN+F+I+V+DDQ+D+RGGSP   ISPAR +SRIRR+LMRF+FY PSR
Sbjct: 2   KNPAVSTRPKSNGANTFVIHVKDDQDDYRGGSPAPRISPARIMSRIRRVLMRFIFYLPSR 61

Query: 63  GSSPSSSSS--IMASKRRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG 122
           GSS +++++    A K++NLEKFEPPKTSCSS+YSSYSHYNEAIADCIEFFNKSSQDQIG
Sbjct: 62  GSSAAAAAAGPFTALKQKNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFFNKSSQDQIG 121

Query: 123 -----ISDANAMV 129
                ISDANAMV
Sbjct: 122 VDEGRISDANAMV 134

[Close]

BLAST of CmoCh05G003050 vs. NCBI nr
Match: gi|700207553|gb|KGN62672.1| (hypothetical protein Csa_2G368240 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 4.7e-45
Identity = 96/131 (73.28%), Postives = 113/131 (86.26%), Query Frame = 1


Query: 3   KNPAVSIRQKSNGANSFIINVEDDQEDFRGGSPGVSISPARFLSRIRRILMRFMFYFPSR 62
           KNPAVS R KSNGANSF+++V+DDQ+D+RGGSP   ISPAR LSRIRR+ MRF+FY PSR
Sbjct: 2   KNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPSR 61

Query: 63  GSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG-- 122
           GS+ ++++++   K+RNLEKFEPPKTSCSS+YSSYSHYNEAIADCIEF NKSSQDQIG  
Sbjct: 62  GSAAAAAAAL---KQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVD 121

Query: 123 ---ISDANAMV 129
              ISDANAMV
Sbjct: 122 EGRISDANAMV 129

[Close]

BLAST of CmoCh05G003050 vs. NCBI nr
Match: gi|590594221|ref|XP_007017791.1| (Uncharacterized protein TCM_034216 [Theobroma cacao])

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-18
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 34  SPGVSISPARFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSN 93
           SP ++ S  +  +R R+ILMR +F  PS GSS +SS   MA K+ N ++F+PPKTSCSS 
Sbjct: 60  SPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSS---MAPKQTNCDRFDPPKTSCSSY 119

Query: 94  YSSYSHYNEAIADCIEFFNKSSQDQI 120
           YSS+SHY EAIADCIEFFNKSSQ+ I
Sbjct: 120 YSSHSHYTEAIADCIEFFNKSSQEGI 142

[Close]

BLAST of CmoCh05G003050 vs. NCBI nr
Match: gi|641866162|gb|KDO84847.1| (hypothetical protein CISIN_1g047366mg, partial [Citrus sinensis])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 1


Query: 43  RFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNE 102
           +  +R R+ILMR +F FPS G+S S+SS+  ASK++  +K+EPPKTSCSS YSS+SHY+E
Sbjct: 2   KLFNRFRKILMRLLFSFPSHGTSASTSST--ASKQKACDKYEPPKTSCSSYYSSHSHYSE 61

Query: 103 AIADCIEFFNKSSQDQI 120
           AIADCIEFFNKSSQ+ I
Sbjct: 62  AIADCIEFFNKSSQEGI 76

[Close]

BLAST of CmoCh05G003050 vs. NCBI nr
Match: gi|567885227|ref|XP_006435172.1| (hypothetical protein CICLE_v10003277mg [Citrus clementina])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 1


Query: 43  RFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNE 102
           +  +R R+ILMR +F FPS G+S S+SS+  ASK++  +K+EPPKTSCSS YSS+SHY+E
Sbjct: 2   KLFNRFRKILMRLLFSFPSHGTSASTSST--ASKQKACDKYEPPKTSCSSYYSSHSHYSE 61

Query: 103 AIADCIEFFNKSSQDQI 120
           AIADCIEFFNKSSQ+ I
Sbjct: 62  AIADCIEFFNKSSQEGI 76

The following BLAST results are available for this feature:

BLAST of CmoCh05G003050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G003050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPF9_CUCSA	3.3e-45	73.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368240 PE=4 SV=1	[more]
A0A061FD82_THECC	2.6e-18	60.47	Uncharacterized protein OS=Theobroma cacao GN=TCM_034216 PE=4 SV=1	[more]
A0A067HAL4_CITSI	7.7e-18	64.94	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047366mg PE=4 S...	[more]
V4T5D5_9ROSI	7.7e-18	64.94	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003277mg PE=4 SV=1	[more]
A0A0D2U3A7_GOSRA	6.5e-17	46.72	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G004900 PE=4 SV=1	[more]

BLAST of CmoCh05G003050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75717.1	2.0e-09	47.30	unknown protein	[more]

BLAST of CmoCh05G003050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088097\|ref\|XP_008444800.1\|	1.2e-45	73.68	PREDICTED: uncharacterized protein LOC103488039 [Cucumis melo]	[more]
gi\|700207553\|gb\|KGN62672.1\|	4.7e-45	73.28	hypothetical protein Csa_2G368240 [Cucumis sativus]	[more]
gi\|590594221\|ref\|XP_007017791.1\|	3.8e-18	60.47	Uncharacterized protein TCM_034216 [Theobroma cacao]	[more]
gi\|641866162\|gb\|KDO84847.1\|	1.1e-17	64.94	hypothetical protein CISIN_1g047366mg, partial [Citrus sinensis]	[more]
gi\|567885227\|ref\|XP_006435172.1\|	1.1e-17	64.94	hypothetical protein CICLE_v10003277mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G003050.1	CmoCh05G003050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35111	FAMILY NOT NAMED	coord: 4..118 score: 2.0
None	No IPR available	PANTHER	PTHR35111:SF2	F10A5.9	coord: 4..118 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G003050	CmaCh05G003020	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G003050	Cla022429	Watermelon (97103) v1	cmowmB748
CmoCh05G003050	Csa2G368240	Cucumber (Chinese Long) v2	cmocuB777
CmoCh05G003050	MELO3C011006	Melon (DHL92) v3.5.1	cmomeB718
CmoCh05G003050	ClCG08G014360	Watermelon (Charleston Gray)	cmowcgB716
CmoCh05G003050	CSPI02G20800	Wild cucumber (PI 183967)	cmocpiB782
CmoCh05G003050	Lsi08G013270	Bottle gourd (USVL1VR-Ls)	cmolsiB731
CmoCh05G003050	Cp4.1LG11g02410	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G003050	MELO3C011006.2	Melon (DHL92) v3.6.1	cmomedB815
CmoCh05G003050	CsaV3_2G029470	Cucumber (Chinese Long) v3	cmocucB0918
CmoCh05G003050	Bhi04G000136	Wax gourd	cmowgoB0945
CmoCh05G003050	Carg08681	Silver-seed gourd	carcmoB0147
CmoCh05G003050	Carg09409	Silver-seed gourd	carcmoB0196

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G003050	CmoCh09G001030	Cucurbita moschata (Rifu)	cmocmoB033

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G003050	Silver-seed gourd	carcmoB1265
CmoCh05G003050	Silver-seed gourd	carcmoB1319
CmoCh05G003050	Cucumber (Chinese Long) v3	cmocucB0928
CmoCh05G003050	Cucumber (Chinese Long) v3	cmocucB0939
CmoCh05G003050	Cucumber (Chinese Long) v3	cmocucB0948
CmoCh05G003050	Watermelon (97103) v2	cmowmbB774
CmoCh05G003050	Watermelon (97103) v2	cmowmbB787
CmoCh05G003050	Watermelon (97103) v2	cmowmbB792
CmoCh05G003050	Watermelon (97103) v2	cmowmbB802
CmoCh05G003050	Wax gourd	cmowgoB0956
CmoCh05G003050	Wax gourd	cmowgoB0966
CmoCh05G003050	Cucurbita maxima (Rimu)	cmacmoB483
CmoCh05G003050	Cucurbita moschata (Rifu)	cmocmoB156
CmoCh05G003050	Cucurbita moschata (Rifu)	cmocmoB369
CmoCh05G003050	Cucumber (Gy14) v1	cgycmoB0462
CmoCh05G003050	Cucumber (Gy14) v1	cgycmoB0940
CmoCh05G003050	Cucurbita maxima (Rimu)	cmacmoB064
CmoCh05G003050	Cucurbita maxima (Rimu)	cmacmoB199
CmoCh05G003050	Wild cucumber (PI 183967)	cmocpiB791
CmoCh05G003050	Wild cucumber (PI 183967)	cmocpiB802
CmoCh05G003050	Cucumber (Chinese Long) v2	cmocuB788
CmoCh05G003050	Melon (DHL92) v3.5.1	cmomeB721
CmoCh05G003050	Melon (DHL92) v3.5.1	cmomeB732
CmoCh05G003050	Watermelon (Charleston Gray)	cmowcgB706
CmoCh05G003050	Watermelon (97103) v1	cmowmB753
CmoCh05G003050	Cucurbita pepo (Zucchini)	cmocpeB727
CmoCh05G003050	Cucurbita pepo (Zucchini)	cmocpeB728
CmoCh05G003050	Cucurbita pepo (Zucchini)	cmocpeB734
CmoCh05G003050	Cucurbita pepo (Zucchini)	cmocpeB740
CmoCh05G003050	Cucurbita pepo (Zucchini)	cmocpeB750
CmoCh05G003050	Bottle gourd (USVL1VR-Ls)	cmolsiB710
CmoCh05G003050	Bottle gourd (USVL1VR-Ls)	cmolsiB705
CmoCh05G003050	Bottle gourd (USVL1VR-Ls)	cmolsiB717
CmoCh05G003050	Cucumber (Gy14) v2	cgybcmoB238
CmoCh05G003050	Cucumber (Gy14) v2	cgybcmoB397
CmoCh05G003050	Cucumber (Gy14) v2	cgybcmoB827
CmoCh05G003050	Cucumber (Gy14) v2	cgybcmoB951
CmoCh05G003050	Melon (DHL92) v3.6.1	cmomedB819
CmoCh05G003050	Melon (DHL92) v3.6.1	cmomedB829