CmoCh05G003050.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G003050.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr05 : 1351227 .. 1351613 (+)
Sequence length	387

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAATCCAGCCGTTTCGATCAGGCAAAAATCAAACGGAGCAAACAGCTTCATCATTAACGTGGAGGATGATCAAGAGGATTTCAGAGGAGGAAGTCCCGGTGTAAGCATCTCTCCGGCGAGATTTCTCAGCCGGATCCGCCGGATTCTGATGCGATTCATGTTTTATTTTCCTTCTCGAGGTTCGTCGCCGTCATCGTCGTCGTCAATAATGGCGTCGAAGCGGAGAAATCTGGAGAAATTCGAGCCGCCGAAGACTTCCTGCAGTTCGAATTACTCGTCTTACTCGCATTACAACGAAGCTATTGCCGATTGCATCGAGTTCTTCAACAAGTCGTCGCAGGATCAAATCGGAATCTCCGATGCAAATGCGATGGTATGA

mRNA sequence

ATGGAGAAGAATCCAGCCGTTTCGATCAGGCAAAAATCAAACGGAGCAAACAGCTTCATCATTAACGTGGAGGATGATCAAGAGGATTTCAGAGGAGGAAGTCCCGGTGTAAGCATCTCTCCGGCGAGATTTCTCAGCCGGATCCGCCGGATTCTGATGCGATTCATGTTTTATTTTCCTTCTCGAGGTTCGTCGCCGTCATCGTCGTCGTCAATAATGGCGTCGAAGCGGAGAAATCTGGAGAAATTCGAGCCGCCGAAGACTTCCTGCAGTTCGAATTACTCGTCTTACTCGCATTACAACGAAGCTATTGCCGATTGCATCGAGTTCTTCAACAAGTCGTCGCAGGATCAAATCGGAATCTCCGATGCAAATGCGATGGTATGA

Coding sequence (CDS)

ATGGAGAAGAATCCAGCCGTTTCGATCAGGCAAAAATCAAACGGAGCAAACAGCTTCATCATTAACGTGGAGGATGATCAAGAGGATTTCAGAGGAGGAAGTCCCGGTGTAAGCATCTCTCCGGCGAGATTTCTCAGCCGGATCCGCCGGATTCTGATGCGATTCATGTTTTATTTTCCTTCTCGAGGTTCGTCGCCGTCATCGTCGTCGTCAATAATGGCGTCGAAGCGGAGAAATCTGGAGAAATTCGAGCCGCCGAAGACTTCCTGCAGTTCGAATTACTCGTCTTACTCGCATTACAACGAAGCTATTGCCGATTGCATCGAGTTCTTCAACAAGTCGTCGCAGGATCAAATCGGAATCTCCGATGCAAATGCGATGGTATGA

Homology

[Close]

BLAST of CmoCh05G003050.1 vs. TrEMBL
Match: A0A0A0LPF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368240 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-45
Identity = 96/131 (73.28%), Postives = 113/131 (86.26%), Query Frame = 1


Query: 3   KNPAVSIRQKSNGANSFIINVEDDQEDFRGGSPGVSISPARFLSRIRRILMRFMFYFPSR 62
           KNPAVS R KSNGANSF+++V+DDQ+D+RGGSP   ISPAR LSRIRR+ MRF+FY PSR
Sbjct: 2   KNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPSR 61

Query: 63  GSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG-- 122
           GS+ ++++++   K+RNLEKFEPPKTSCSS+YSSYSHYNEAIADCIEF NKSSQDQIG  
Sbjct: 62  GSAAAAAAAL---KQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVD 121

Query: 123 ---ISDANAMV 129
              ISDANAMV
Sbjct: 122 EGRISDANAMV 129

[Close]

BLAST of CmoCh05G003050.1 vs. TrEMBL
Match: A0A061FD82_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_034216 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-18
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 34  SPGVSISPARFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSN 93
           SP ++ S  +  +R R+ILMR +F  PS GSS +SS   MA K+ N ++F+PPKTSCSS 
Sbjct: 60  SPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSS---MAPKQTNCDRFDPPKTSCSSY 119

Query: 94  YSSYSHYNEAIADCIEFFNKSSQDQI 120
           YSS+SHY EAIADCIEFFNKSSQ+ I
Sbjct: 120 YSSHSHYTEAIADCIEFFNKSSQEGI 142

[Close]

BLAST of CmoCh05G003050.1 vs. TrEMBL
Match: A0A067HAL4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047366mg PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.7e-18
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 1


Query: 43  RFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNE 102
           +  +R R+ILMR +F FPS G+S S+SS+  ASK++  +K+EPPKTSCSS YSS+SHY+E
Sbjct: 2   KLFNRFRKILMRLLFSFPSHGTSASTSST--ASKQKACDKYEPPKTSCSSYYSSHSHYSE 61

Query: 103 AIADCIEFFNKSSQDQI 120
           AIADCIEFFNKSSQ+ I
Sbjct: 62  AIADCIEFFNKSSQEGI 76

[Close]

BLAST of CmoCh05G003050.1 vs. TrEMBL
Match: V4T5D5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003277mg PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.7e-18
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 1


Query: 43  RFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNE 102
           +  +R R+ILMR +F FPS G+S S+SS+  ASK++  +K+EPPKTSCSS YSS+SHY+E
Sbjct: 2   KLFNRFRKILMRLLFSFPSHGTSASTSST--ASKQKACDKYEPPKTSCSSYYSSHSHYSE 61

Query: 103 AIADCIEFFNKSSQDQI 120
           AIADCIEFFNKSSQ+ I
Sbjct: 62  AIADCIEFFNKSSQEGI 76

[Close]

BLAST of CmoCh05G003050.1 vs. TrEMBL
Match: A0A0D2U3A7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G004900 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.5e-17
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 1


Query: 8   SIRQKSNGAN-----SFIINVEDDQEDFRG-GSPGVSISPARFLSRIRRILMRFMFYFPS 67
           S++ K+ G +     SF+I V+D ++      SP ++ S  +  +R R++LMR +F    
Sbjct: 11  SVKAKNKGLSPITIMSFVIQVKDSEDRVNSVSSPKLNFSAMKLFNRFRKVLMRLVF---- 70

Query: 68  RGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIGI 124
             S  S+     A K +N E+FEPPKTSCSS YSS+SHY+EAIADCIEFFNKS+  Q GI
Sbjct: 71  --SGKSNMGGGGACKEKNCERFEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSAA-QEGI 125

[Close]

BLAST of CmoCh05G003050.1 vs. TAIR10
Match: AT1G75717.1 (AT1G75717.1 unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-09
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1


Query: 43  RFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNY-SSYSHYN 102
           +   ++ +ILMR + +     S     ++   S+  + E+FEPPK SCSS+Y SS+ HY+
Sbjct: 2   KLFHKLGKILMRLIDFTLHSSSRRQKKNN---SRSGDGERFEPPKISCSSSYYSSHVHYS 61

Query: 103 EAIADCIEFFNKSS 116
           EAIADCIEFFNKSS
Sbjct: 62  EAIADCIEFFNKSS 72

[Close]

BLAST of CmoCh05G003050.1 vs. NCBI nr
Match: gi|659088097|ref|XP_008444800.1| (PREDICTED: uncharacterized protein LOC103488039 [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 1.2e-45
Identity = 98/133 (73.68%), Postives = 115/133 (86.47%), Query Frame = 1


Query: 3   KNPAVSIRQKSNGANSFIINVEDDQEDFRGGSPGVSISPARFLSRIRRILMRFMFYFPSR 62
           KNPAVS R KSNGAN+F+I+V+DDQ+D+RGGSP   ISPAR +SRIRR+LMRF+FY PSR
Sbjct: 2   KNPAVSTRPKSNGANTFVIHVKDDQDDYRGGSPAPRISPARIMSRIRRVLMRFIFYLPSR 61

Query: 63  GSSPSSSSS--IMASKRRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG 122
           GSS +++++    A K++NLEKFEPPKTSCSS+YSSYSHYNEAIADCIEFFNKSSQDQIG
Sbjct: 62  GSSAAAAAAGPFTALKQKNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFFNKSSQDQIG 121

Query: 123 -----ISDANAMV 129
                ISDANAMV
Sbjct: 122 VDEGRISDANAMV 134

[Close]

BLAST of CmoCh05G003050.1 vs. NCBI nr
Match: gi|700207553|gb|KGN62672.1| (hypothetical protein Csa_2G368240 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 4.7e-45
Identity = 96/131 (73.28%), Postives = 113/131 (86.26%), Query Frame = 1


Query: 3   KNPAVSIRQKSNGANSFIINVEDDQEDFRGGSPGVSISPARFLSRIRRILMRFMFYFPSR 62
           KNPAVS R KSNGANSF+++V+DDQ+D+RGGSP   ISPAR LSRIRR+ MRF+FY PSR
Sbjct: 2   KNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPSR 61

Query: 63  GSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG-- 122
           GS+ ++++++   K+RNLEKFEPPKTSCSS+YSSYSHYNEAIADCIEF NKSSQDQIG  
Sbjct: 62  GSAAAAAAAL---KQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVD 121

Query: 123 ---ISDANAMV 129
              ISDANAMV
Sbjct: 122 EGRISDANAMV 129

[Close]

BLAST of CmoCh05G003050.1 vs. NCBI nr
Match: gi|590594221|ref|XP_007017791.1| (Uncharacterized protein TCM_034216 [Theobroma cacao])

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-18
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 34  SPGVSISPARFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSN 93
           SP ++ S  +  +R R+ILMR +F  PS GSS +SS   MA K+ N ++F+PPKTSCSS 
Sbjct: 60  SPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSS---MAPKQTNCDRFDPPKTSCSSY 119

Query: 94  YSSYSHYNEAIADCIEFFNKSSQDQI 120
           YSS+SHY EAIADCIEFFNKSSQ+ I
Sbjct: 120 YSSHSHYTEAIADCIEFFNKSSQEGI 142

[Close]

BLAST of CmoCh05G003050.1 vs. NCBI nr
Match: gi|641866162|gb|KDO84847.1| (hypothetical protein CISIN_1g047366mg, partial [Citrus sinensis])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 1


Query: 43  RFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNE 102
           +  +R R+ILMR +F FPS G+S S+SS+  ASK++  +K+EPPKTSCSS YSS+SHY+E
Sbjct: 2   KLFNRFRKILMRLLFSFPSHGTSASTSST--ASKQKACDKYEPPKTSCSSYYSSHSHYSE 61

Query: 103 AIADCIEFFNKSSQDQI 120
           AIADCIEFFNKSSQ+ I
Sbjct: 62  AIADCIEFFNKSSQEGI 76

[Close]

BLAST of CmoCh05G003050.1 vs. NCBI nr
Match: gi|567885227|ref|XP_006435172.1| (hypothetical protein CICLE_v10003277mg [Citrus clementina])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 1


Query: 43  RFLSRIRRILMRFMFYFPSRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNE 102
           +  +R R+ILMR +F FPS G+S S+SS+  ASK++  +K+EPPKTSCSS YSS+SHY+E
Sbjct: 2   KLFNRFRKILMRLLFSFPSHGTSASTSST--ASKQKACDKYEPPKTSCSSYYSSHSHYSE 61

Query: 103 AIADCIEFFNKSSQDQI 120
           AIADCIEFFNKSSQ+ I
Sbjct: 62  AIADCIEFFNKSSQEGI 76

The following BLAST results are available for this feature:

BLAST of CmoCh05G003050.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G003050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPF9_CUCSA	3.3e-45	73.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368240 PE=4 SV=1	[more]
A0A061FD82_THECC	2.6e-18	60.47	Uncharacterized protein OS=Theobroma cacao GN=TCM_034216 PE=4 SV=1	[more]
A0A067HAL4_CITSI	7.7e-18	64.94	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047366mg PE=4 S...	[more]
V4T5D5_9ROSI	7.7e-18	64.94	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003277mg PE=4 SV=1	[more]
A0A0D2U3A7_GOSRA	6.5e-17	46.72	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G004900 PE=4 SV=1	[more]

BLAST of CmoCh05G003050.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75717.1	2.0e-09	47.30	unknown protein	[more]

BLAST of CmoCh05G003050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088097\|ref\|XP_008444800.1\|	1.2e-45	73.68	PREDICTED: uncharacterized protein LOC103488039 [Cucumis melo]	[more]
gi\|700207553\|gb\|KGN62672.1\|	4.7e-45	73.28	hypothetical protein Csa_2G368240 [Cucumis sativus]	[more]
gi\|590594221\|ref\|XP_007017791.1\|	3.8e-18	60.47	Uncharacterized protein TCM_034216 [Theobroma cacao]	[more]
gi\|641866162\|gb\|KDO84847.1\|	1.1e-17	64.94	hypothetical protein CISIN_1g047366mg, partial [Citrus sinensis]	[more]
gi\|567885227\|ref\|XP_006435172.1\|	1.1e-17	64.94	hypothetical protein CICLE_v10003277mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh05G003050	CmoCh05G003050	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh05G003050.1	CmoCh05G003050.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G003050.1.exon.1	CmoCh05G003050.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G003050.1.CDS.1	CmoCh05G003050.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35111	FAMILY NOT NAMED	coord: 4..118 score: 2.0
None	No IPR available	PANTHER	PTHR35111:SF2	F10A5.9	coord: 4..118 score: 2.0