CmoCh05G000760 (gene) Cucurbita moschata (Rifu)

NameCmoCh05G000760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionB12D protein
LocationCmo_Chr05 : 296747 .. 297926 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTAAAAAAAAAAAAAAATTGATGAAGCATGCAAAAGGTATATAATATTTTCGTCCCACGTTGGCTAATTTAGGGAATGATCATGATCTACAAGTAAAGTCTTACTTTCCTAACCCCACTTTTATCCACTGGGAAAAAAATATCGAAATTAAATCTCTCTCTCTCTTTTATTTATTTTTTATTTTTTATTTATTTTTCCTTTTCATTTACAATGTATTAAAAAAAAAATTCAAATAATGGTGAAATTTACCATCCTTGAAATTGTGATGGTGTGAAAGGCAGCAAAAAGAAGACTAAGCATGAGACGCCAATAAGGAAGGAAATAAGTTGGCCAGCTTAGACGGCGATGGTTATGGTTATTATGGCTGCCCCTAATTTCTAACCCCCCTCCTTCTCCAAACCTCGTCTTTCCCTTTCCCTTTCCCTTTCCTTATAAATTCCCACGTCAAAACGTGCCTTCGCCGCTGCACCTTTCTTCATCCTTCTTCTATTTCTCCTTCCCAAGAACACCCATTTTCTTCTCTCAACTGCCATGGCCACCGCCAACAGATGGTTGAAGCCTGAGGTTGTTCCCTCTCTCCCTCTCTTTTCCCATTCATTTTCCATTACTTCCTGAGAAAAACATGAAGAAATCAACAACTTTACCAATCAAAACTTGATTTCCTTGAATGCATATGCAGGTGTATCCTCTCTTTGCTACGGTTGGTGTGGCCGTTGGCATCTGTGGTATGCAGCTTGTTAGAAACATAACCACCAATCCTGAAGTCAGGTAAATATTTCAAGCTGTACAAAAACATGTTCAATATATTGGAAATGTATTGTATAATACTTTCACCAAGAGAAGGGGGGGCTAAACAGTCCTGATTTGTTCTGAAATGGAACATGACAGGGTTACCAAAGAGAGGAGAGCTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGGCTTAGGAAGTTCCTCAGAACAAGGCCCCCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAAATCCAATTCTGATACCAACCTTTGAATTTAGTTCCAAATAATGAAGTGATATTTGAACTGATGGTGTATGATTCTTCTGTTATTTTTATAAGGGAAACCCAAACCGAAAATTCCAAATATCTAACATAATGTTCTGCTAAT

mRNA sequence

AAATTAAAAAAAAAAAAAAATTGATGAAGCATGCAAAAGGCAGCAAAAAGAAGACTAAGCATGAGACGCCAATAAGGAAGGAAATAAGTTGGCCAGCTTAGACGGCGATGGTTATGGTTATTATGGCTGCCCCTAATTTCTAACCCCCCTCCTTCTCCAAACCTCGTCTTTCCCTTTCCCTTTCCCTTTCCTTATAAATTCCCACGTCAAAACGTGCCTTCGCCGCTGCACCTTTCTTCATCCTTCTTCTATTTCTCCTTCCCAAGAACACCCATTTTCTTCTCTCAACTGCCATGGCCACCGCCAACAGATGGTTGAAGCCTGAGGTGTATCCTCTCTTTGCTACGGTTGGTGTGGCCGTTGGCATCTGTGGTATGCAGCTTGTTAGAAACATAACCACCAATCCTGAAGTCAGGGTTACCAAAGAGAGGAGAGCTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGGCTTAGGAAGTTCCTCAGAACAAGGCCCCCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAAATCCAATTCTGATACCAACCTTTGAATTTAGTTCCAAATAATGAAGTGATATTTGAACTGATGGTGTATGATTCTTCTGTTATTTTTATAAGGGAAACCCAAACCGAAAATTCCAAATATCTAACATAATGTTCTGCTAAT

Coding sequence (CDS)

ATGGCCACCGCCAACAGATGGTTGAAGCCTGAGGTGTATCCTCTCTTTGCTACGGTTGGTGTGGCCGTTGGCATCTGTGGTATGCAGCTTGTTAGAAACATAACCACCAATCCTGAAGTCAGGGTTACCAAAGAGAGGAGAGCTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGGCTTAGGAAGTTCCTCAGAACAAGGCCCCCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAA
BLAST of CmoCh05G000760 vs. TrEMBL
Match: A0A0A0LMX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350420 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-42
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 1

Query: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRV KERRAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

BLAST of CmoCh05G000760 vs. TrEMBL
Match: A0A0B0NLL4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_19724 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.6e-38
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 1

Query: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60
          MA+ANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRVTKE RAAGVL+NFEEGEK
Sbjct: 1  MASANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVTKENRAAGVLNNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDP 89
          YAEHGLRKF+R R PQIMPS+N FFSDP
Sbjct: 61 YAEHGLRKFVRNRQPQIMPSVNNFFSDP 88

BLAST of CmoCh05G000760 vs. TrEMBL
Match: A0A0D2RN01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G172200 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.5e-38
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 1

Query: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60
          MA+ANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNP+VRVTKE RAAGVL+NFEEGEK
Sbjct: 1  MASANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPDVRVTKENRAAGVLNNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDP 89
          YAEHGLRKF+R R PQIMPS+N FFSDP
Sbjct: 61 YAEHGLRKFVRNRQPQIMPSVNNFFSDP 88

BLAST of CmoCh05G000760 vs. TrEMBL
Match: A0A061E739_THECC (B12D protein OS=Theobroma cacao GN=TCM_010755 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.5e-36
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 1

Query: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60
          MA+ NRWLKPEVYPLFA VG AVGIC MQLVRNI+TNPEVRVTKE R+AG+L+NFEEGE+
Sbjct: 1  MASTNRWLKPEVYPLFAAVGFAVGICAMQLVRNISTNPEVRVTKENRSAGILENFEEGER 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLR F+R RP QIMPSIN FFSDPN
Sbjct: 61 YAEHGLRNFVRKRPSQIMPSINNFFSDPN 89

BLAST of CmoCh05G000760 vs. TrEMBL
Match: D7TAM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02450 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.3e-36
Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 1

Query: 2  ATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEKY 61
          +T NRWL+PEVYPLFA VGVAVGICGMQLVRNI TNPEVRVTK+ R AGVL+NFEEGE+Y
Sbjct: 4  STVNRWLRPEVYPLFAAVGVAVGICGMQLVRNICTNPEVRVTKQNRTAGVLENFEEGERY 63

Query: 62 AEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          AEH LRKF+R + PQIMPSINKFFSDPN
Sbjct: 64 AEHRLRKFVRNKEPQIMPSINKFFSDPN 91

BLAST of CmoCh05G000760 vs. TAIR10
Match: AT3G48140.1 (AT3G48140.1 B12D protein)

HSP 1 Score: 133.7 bits (335), Expect = 5.8e-32
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 1

Query: 4  ANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEKYAE 63
          A+RWL+PEVYPLFA  GVAVGIC   L+RNIT NPEVR TKE RAAG+LDN  EGEKY E
Sbjct: 2  ASRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKE 61

Query: 64 HGLRKFLRTRPPQIMPSINKFFSDP 89
          + LRKF+R + P+IMP +NKFF+DP
Sbjct: 62 NFLRKFVRNKKPEIMPGLNKFFTDP 86

BLAST of CmoCh05G000760 vs. TAIR10
Match: AT3G29970.1 (AT3G29970.1 B12D protein)

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-23
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1

Query: 6  RWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEKYAEHG 65
          RW++PEVYPL   +G    +   QL RN   NP+ R+ KE R  G+L+N +EGEKYA+H 
Sbjct: 3  RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHN 62

Query: 66 LRKFLRTRPPQIMPSINKFFS 87
           RK+LRTR PQ+MPS+N+FFS
Sbjct: 63 FRKYLRTRQPQVMPSLNRFFS 83

BLAST of CmoCh05G000760 vs. NCBI nr
Match: gi|449450387|ref|XP_004142944.1| (PREDICTED: uncharacterized protein LOC101222643 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 1.5e-42
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 1

Query: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRV KERRAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

BLAST of CmoCh05G000760 vs. NCBI nr
Match: gi|1009152981|ref|XP_015894389.1| (PREDICTED: uncharacterized protein LOC107428374 [Ziziphus jujuba])

HSP 1 Score: 172.2 bits (435), Expect = 4.2e-40
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 1

Query: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60
          MAT NRWL+PEVYPLFA+VGVAVGICGMQLVRNITTNPEVRVTKE RAAGVLDN +EGEK
Sbjct: 1  MATVNRWLRPEVYPLFASVGVAVGICGMQLVRNITTNPEVRVTKENRAAGVLDNHKEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLR RPPQIMPSIN FFSDPN
Sbjct: 61 YAEHGLRKFLRNRPPQIMPSINNFFSDPN 89

BLAST of CmoCh05G000760 vs. NCBI nr
Match: gi|728833246|gb|KHG12689.1| (Uncharacterized protein F383_19724 [Gossypium arboreum])

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-38
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 1

Query: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60
          MA+ANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRVTKE RAAGVL+NFEEGEK
Sbjct: 1  MASANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVTKENRAAGVLNNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDP 89
          YAEHGLRKF+R R PQIMPS+N FFSDP
Sbjct: 61 YAEHGLRKFVRNRQPQIMPSVNNFFSDP 88

BLAST of CmoCh05G000760 vs. NCBI nr
Match: gi|823158763|ref|XP_012479217.1| (PREDICTED: uncharacterized protein LOC105794543 [Gossypium raimondii])

HSP 1 Score: 165.2 bits (417), Expect = 5.1e-38
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 1

Query: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60
          MA+ANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNP+VRVTKE RAAGVL+NFEEGEK
Sbjct: 1  MASANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPDVRVTKENRAAGVLNNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDP 89
          YAEHGLRKF+R R PQIMPS+N FFSDP
Sbjct: 61 YAEHGLRKFVRNRQPQIMPSVNNFFSDP 88

BLAST of CmoCh05G000760 vs. NCBI nr
Match: gi|672162216|ref|XP_008800943.1| (PREDICTED: uncharacterized protein LOC103715180 [Phoenix dactylifera])

HSP 1 Score: 162.2 bits (409), Expect = 4.3e-37
Identity = 74/88 (84.09%), Postives = 82/88 (93.18%), Query Frame = 1

Query: 2   ATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEKY 61
           +T +RWLKPEVYPLFA VGVAVGICGMQLVRNITTNPEVRVTK+ RAAGVLDNF EGEKY
Sbjct: 34  STTSRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGVLDNFAEGEKY 93

Query: 62  AEHGLRKFLRTRPPQIMPSINKFFSDPN 90
           AEHGLRKF+R + P+IMPS+NKFFS+PN
Sbjct: 94  AEHGLRKFIRNKSPEIMPSVNKFFSNPN 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LMX7_CUCSA1.1e-4296.63Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350420 PE=4 SV=1[more]
A0A0B0NLL4_GOSAR1.6e-3888.64Uncharacterized protein OS=Gossypium arboreum GN=F383_19724 PE=4 SV=1[more]
A0A0D2RN01_GOSRA3.5e-3887.50Uncharacterized protein OS=Gossypium raimondii GN=B456_005G172200 PE=4 SV=1[more]
A0A061E739_THECC2.5e-3682.02B12D protein OS=Theobroma cacao GN=TCM_010755 PE=4 SV=1[more]
D7TAM5_VITVI3.3e-3682.95Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02450 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT3G48140.15.8e-3270.59 B12D protein[more]
AT3G29970.12.2e-2354.32 B12D protein[more]
Match NameE-valueIdentityDescription
gi|449450387|ref|XP_004142944.1|1.5e-4296.63PREDICTED: uncharacterized protein LOC101222643 [Cucumis sativus][more]
gi|1009152981|ref|XP_015894389.1|4.2e-4091.01PREDICTED: uncharacterized protein LOC107428374 [Ziziphus jujuba][more]
gi|728833246|gb|KHG12689.1|2.3e-3888.64Uncharacterized protein F383_19724 [Gossypium arboreum][more]
gi|823158763|ref|XP_012479217.1|5.1e-3887.50PREDICTED: uncharacterized protein LOC105794543 [Gossypium raimondii][more]
gi|672162216|ref|XP_008800943.1|4.3e-3784.09PREDICTED: uncharacterized protein LOC103715180 [Phoenix dactylifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010530B12D
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005777 peroxisome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G000760.1CmoCh05G000760.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010530NADH-ubiquinone reductase complex 1 MLRQ subunitPFAMPF06522B12Dcoord: 9..76
score: 4.3
NoneNo IPR availablePANTHERPTHR33417FAMILY NOT NAMEDcoord: 3..89
score: 2.5
NoneNo IPR availablePANTHERPTHR33417:SF3SUBFAMILY NOT NAMEDcoord: 3..89
score: 2.5

The following gene(s) are paralogous to this gene:

None