ClCG08G017340 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G017340
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	B12D protein
Location	CG_Chr08 : 29589555 .. 29590235 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTGCTCCTTTCTTCATCCTTCTTCCAAAGAACAGCCATTCTCTTCTCTATATTGCCATGCCCACCGCTAACAGATGGTTAAAGCCGGAGGTTTCTTTTTTATGCCTTTCATTTTCTATTACTTTCTGTTTGGCTGCTAAGAAAAAACATTAAGAAAACAACGAATTTACCATTCAAAACTTGATTTCCTTGAATACATATGCAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGTTGCAGCTTTTTAGAAACATAACCACCAATCCTGAAGTCAGGTAAATATTTCAAGTTGTAGAAAAAAAATATGTTCAACATAATGTAGAAAAAAAAATGTAAATATTTTGATCAAGAGAAGAGAAGGGGTTAAAAAAAGTGTCCTGATTTGTTCTGAATGGAACATGATAGGGTTATCAAAGAGAAGAGAGCTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGTCTTAGGAAGTTCCTCAGAACAAGACCACCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAAATACAATTCTGTTACTGACCTTTGAATTTAGTTGTTGATTGCCTGCTGAATTTGTTGGCGATGTATAAGTCGAGTCCTTCCAAATTATATGCTTCTTCTGTTATGGCT

mRNA sequence

CCCTGCTCCTTTCTTCATCCTTCTTCCAAAGAACAGCCATTCTCTTCTCTATATTGCCATGCCCACCGCTAACAGATGGTTAAAGCCGGAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGTTGCAGCTTTTTAGAAACATAACCACCAATCCTGAAGTCAGGGTTATCAAAGAGAAGAGAGCTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGTCTTAGGAAGTTCCTCAGAACAAGACCACCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAAATACAATTCTGTTACTGACCTTTGAATTTAGTTGTTGATTGCCTGCTGAATTTGTTGGCGATGTATAAGTCGAGTCCTTCCAAATTATATGCTTCTTCTGTTATGGCT

Coding sequence (CDS)

ATGCCCACCGCTAACAGATGGTTAAAGCCGGAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGTTGCAGCTTTTTAGAAACATAACCACCAATCCTGAAGTCAGGGTTATCAAAGAGAAGAGAGCTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGTCTTAGGAAGTTCCTCAGAACAAGACCACCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAA

Protein sequence

MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFLRTRPPQIMPSINKFFSDPN

Homology

[Close]

BLAST of ClCG08G017340 vs. TrEMBL
Match: A0A0A0LMX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350420 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 5.8e-41
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 1


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M TANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNPEVRVIKE+RAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of ClCG08G017340 vs. TrEMBL
Match: A0A0B0NLL4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_19724 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 7.4e-36
Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M +ANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNPEVRV KE RAAGVL+NFEEGEK
Sbjct: 1  MASANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVTKENRAAGVLNNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDP 89
          YAEHGLRKF+R R PQIMPS+N FFSDP
Sbjct: 61 YAEHGLRKFVRNRQPQIMPSVNNFFSDP 88

[Close]

BLAST of ClCG08G017340 vs. TrEMBL
Match: A0A0D2RN01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G172200 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-35
Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M +ANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNP+VRV KE RAAGVL+NFEEGEK
Sbjct: 1  MASANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPDVRVTKENRAAGVLNNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDP 89
          YAEHGLRKF+R R PQIMPS+N FFSDP
Sbjct: 61 YAEHGLRKFVRNRQPQIMPSVNNFFSDP 88

[Close]

BLAST of ClCG08G017340 vs. TrEMBL
Match: D7TAM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02450 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-34
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 3  TANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYA 62
          T NRWL+PEVYPLFAAVGVAVGICG+QL RNI TNPEVRV K+ R AGVL+NFEEGE+YA
Sbjct: 5  TVNRWLRPEVYPLFAAVGVAVGICGMQLVRNICTNPEVRVTKQNRTAGVLENFEEGERYA 64

Query: 63 EHGLRKFLRTRPPQIMPSINKFFSDPN 90
          EH LRKF+R + PQIMPSINKFFSDPN
Sbjct: 65 EHRLRKFVRNKEPQIMPSINKFFSDPN 91

[Close]

BLAST of ClCG08G017340 vs. TrEMBL
Match: A0A059B7Z3_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04674 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.1e-34
Identity = 69/86 (80.23%), Postives = 79/86 (91.86%), Query Frame = 1


Query: 3   TANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYA 62
           TANRW++PEV+PLFAAVGVAVGICG+QL RNI TNPEVRV KEKRAAGVLDNF EGEKY+
Sbjct: 49  TANRWIRPEVFPLFAAVGVAVGICGMQLIRNICTNPEVRVTKEKRAAGVLDNFAEGEKYS 108

Query: 63  EHGLRKFLRTRPPQIMPSINKFFSDP 89
           +H +R+F+R RPPQ+MPSIN FFSDP
Sbjct: 109 QHVVRRFVRNRPPQVMPSINNFFSDP 134

[Close]

BLAST of ClCG08G017340 vs. TAIR10
Match: AT3G48140.1 (AT3G48140.1 B12D protein)

HSP 1 Score: 130.2 bits (326), Expect = 6.4e-31
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 1


Query: 4  ANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAE 63
          A+RWL+PEVYPLFAA GVAVGIC   L RNIT NPEVR  KE RAAG+LDN  EGEKY E
Sbjct: 2  ASRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKE 61

Query: 64 HGLRKFLRTRPPQIMPSINKFFSDP 89
          + LRKF+R + P+IMP +NKFF+DP
Sbjct: 62 NFLRKFVRNKKPEIMPGLNKFFTDP 86

[Close]

BLAST of ClCG08G017340 vs. TAIR10
Match: AT3G29970.1 (AT3G29970.1 B12D protein)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-22
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 6  RWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHG 65
          RW++PEVYPL  A+G    +   QL RN   NP+ R+ KE R  G+L+N +EGEKYA+H 
Sbjct: 3  RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHN 62

Query: 66 LRKFLRTRPPQIMPSINKFFS 87
           RK+LRTR PQ+MPS+N+FFS
Sbjct: 63 FRKYLRTRQPQVMPSLNRFFS 83

[Close]

BLAST of ClCG08G017340 vs. NCBI nr
Match: gi|449450387|ref|XP_004142944.1| (PREDICTED: uncharacterized protein LOC101222643 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 8.4e-41
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 1


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M TANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNPEVRVIKE+RAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of ClCG08G017340 vs. NCBI nr
Match: gi|1009152981|ref|XP_015894389.1| (PREDICTED: uncharacterized protein LOC107428374 [Ziziphus jujuba])

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-37
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 1


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M T NRWL+PEVYPLFA+VGVAVGICG+QL RNITTNPEVRV KE RAAGVLDN +EGEK
Sbjct: 1  MATVNRWLRPEVYPLFASVGVAVGICGMQLVRNITTNPEVRVTKENRAAGVLDNHKEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLR RPPQIMPSIN FFSDPN
Sbjct: 61 YAEHGLRKFLRNRPPQIMPSINNFFSDPN 89

[Close]

BLAST of ClCG08G017340 vs. NCBI nr
Match: gi|728833246|gb|KHG12689.1| (Uncharacterized protein F383_19724 [Gossypium arboreum])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M +ANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNPEVRV KE RAAGVL+NFEEGEK
Sbjct: 1  MASANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVTKENRAAGVLNNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDP 89
          YAEHGLRKF+R R PQIMPS+N FFSDP
Sbjct: 61 YAEHGLRKFVRNRQPQIMPSVNNFFSDP 88

[Close]

BLAST of ClCG08G017340 vs. NCBI nr
Match: gi|823158763|ref|XP_012479217.1| (PREDICTED: uncharacterized protein LOC105794543 [Gossypium raimondii])

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-35
Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M +ANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNP+VRV KE RAAGVL+NFEEGEK
Sbjct: 1  MASANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPDVRVTKENRAAGVLNNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDP 89
          YAEHGLRKF+R R PQIMPS+N FFSDP
Sbjct: 61 YAEHGLRKFVRNRQPQIMPSVNNFFSDP 88

[Close]

BLAST of ClCG08G017340 vs. NCBI nr
Match: gi|672162216|ref|XP_008800943.1| (PREDICTED: uncharacterized protein LOC103715180 [Phoenix dactylifera])

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-35
Identity = 72/87 (82.76%), Postives = 80/87 (91.95%), Query Frame = 1


Query: 3   TANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYA 62
           T +RWLKPEVYPLFAAVGVAVGICG+QL RNITTNPEVRV K+ RAAGVLDNF EGEKYA
Sbjct: 35  TTSRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGVLDNFAEGEKYA 94

Query: 63  EHGLRKFLRTRPPQIMPSINKFFSDPN 90
           EHGLRKF+R + P+IMPS+NKFFS+PN
Sbjct: 95  EHGLRKFIRNKSPEIMPSVNKFFSNPN 121

The following BLAST results are available for this feature:

BLAST of ClCG08G017340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMX7_CUCSA	5.8e-41	93.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350420 PE=4 SV=1	[more]
A0A0B0NLL4_GOSAR	7.4e-36	84.09	Uncharacterized protein OS=Gossypium arboreum GN=F383_19724 PE=4 SV=1	[more]
A0A0D2RN01_GOSRA	1.6e-35	82.95	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G172200 PE=4 SV=1	[more]
D7TAM5_VITVI	1.8e-34	81.61	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02450 PE=4 SV=...	[more]
A0A059B7Z3_EUCGR	3.1e-34	80.23	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04674 PE=4 ...	[more]

BLAST of ClCG08G017340 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48140.1	6.4e-31	70.59	B12D protein	[more]
AT3G29970.1	1.1e-22	55.56	B12D protein	[more]

BLAST of ClCG08G017340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450387\|ref\|XP_004142944.1\|	8.4e-41	93.26	PREDICTED: uncharacterized protein LOC101222643 [Cucumis sativus]	[more]
gi\|1009152981\|ref\|XP_015894389.1\|	1.9e-37	86.52	PREDICTED: uncharacterized protein LOC107428374 [Ziziphus jujuba]	[more]
gi\|728833246\|gb\|KHG12689.1\|	1.1e-35	84.09	Uncharacterized protein F383_19724 [Gossypium arboreum]	[more]
gi\|823158763\|ref\|XP_012479217.1\|	2.4e-35	82.95	PREDICTED: uncharacterized protein LOC105794543 [Gossypium raimondii]	[more]
gi\|672162216\|ref\|XP_008800943.1\|	2.4e-35	82.76	PREDICTED: uncharacterized protein LOC103715180 [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010530	B12D

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G017340.1	ClCG08G017340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 9..76 score: 2.4
None	No IPR available	PANTHER	PTHR33417	FAMILY NOT NAMED	coord: 3..89 score: 7.2
None	No IPR available	PANTHER	PTHR33417:SF3	SUBFAMILY NOT NAMED	coord: 3..89 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G017340	Csa2G350420	Cucumber (Chinese Long) v2	cuwcgB169
ClCG08G017340	MELO3C010725	Melon (DHL92) v3.5.1	mewcgB295
ClCG08G017340	Cla022707	Watermelon (97103) v1	wcgwmB400
ClCG08G017340	Cla97C08G161030	Watermelon (97103) v2	wcgwmbB336
ClCG08G017340	CSPI02G17690	Wild cucumber (PI 183967)	cpiwcgB172
ClCG08G017340	Cucsa.394830	Cucumber (Gy14) v1	cgywcgB674
ClCG08G017340	CmaCh05G000690	Cucurbita maxima (Rimu)	cmawcgB712
ClCG08G017340	CmoCh05G000760	Cucurbita moschata (Rifu)	cmowcgB716
ClCG08G017340	Lsi08G016110	Bottle gourd (USVL1VR-Ls)	lsiwcgB438
ClCG08G017340	Cp4.1LG07g00570	Cucurbita pepo (Zucchini)	cpewcgB754
ClCG08G017340	Cp4.1LG11g00380	Cucurbita pepo (Zucchini)	cpewcgB125
ClCG08G017340	CsGy2G017680	Cucumber (Gy14) v2	cgybwcgB155
ClCG08G017340	MELO3C010725.2	Melon (DHL92) v3.6.1	medwcgB288
ClCG08G017340	Carg20467	Silver-seed gourd	carwcgB0605
ClCG08G017340	CsaV3_2G025290	Cucumber (Chinese Long) v3	cucwcgB176

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G017340	Cucurbita maxima (Rimu)	cmawcgB173
ClCG08G017340	Cucurbita maxima (Rimu)	cmawcgB372
ClCG08G017340	Cucurbita maxima (Rimu)	cmawcgB681
ClCG08G017340	Cucurbita moschata (Rifu)	cmowcgB164
ClCG08G017340	Cucurbita moschata (Rifu)	cmowcgB371
ClCG08G017340	Cucurbita moschata (Rifu)	cmowcgB683
ClCG08G017340	Wild cucumber (PI 183967)	cpiwcgB429
ClCG08G017340	Cucumber (Chinese Long) v2	cuwcgB089
ClCG08G017340	Cucumber (Chinese Long) v2	cuwcgB411
ClCG08G017340	Melon (DHL92) v3.5.1	mewcgB073
ClCG08G017340	Melon (DHL92) v3.5.1	mewcgB161
ClCG08G017340	Watermelon (97103) v1	wcgwmB428
ClCG08G017340	Cucurbita pepo (Zucchini)	cpewcgB054
ClCG08G017340	Cucurbita pepo (Zucchini)	cpewcgB418
ClCG08G017340	Bottle gourd (USVL1VR-Ls)	lsiwcgB308
ClCG08G017340	Cucumber (Gy14) v2	cgybwcgB377
ClCG08G017340	Melon (DHL92) v3.6.1	medwcgB070
ClCG08G017340	Melon (DHL92) v3.6.1	medwcgB154
ClCG08G017340	Silver-seed gourd	carwcgB0237
ClCG08G017340	Silver-seed gourd	carwcgB0666
ClCG08G017340	Cucumber (Chinese Long) v3	cucwcgB431
ClCG08G017340	Wax gourd	wcgwgoB612
ClCG08G017340	Wax gourd	wcgwgoB649
ClCG08G017340	Watermelon (Charleston Gray)	wcgwcgB176
ClCG08G017340	Cucumber (Gy14) v1	cgywcgB078