Cla022707 (gene) Watermelon (97103) v1

NameCla022707
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionB12D-like protein (AHRD V1 ***- Q1H8M8_BETVU); contains Interpro domain(s) IPR010530 B12D
LocationChr8 : 25904341 .. 25904855 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACCGCTAACAGATGGTTAAAGCCGGAGGTTTCTTTTTTATGCCTTTCATTTTCTATTACTTTCTGTTTGGCTGCTAAGAAAAAACATTAAGAAAACAACGAATTTACCATTCAAAACTTGATTTCCTTGAATACATATGCAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGTTGCAGCTTTTTAGAAACATAACCACCAATCCTGAAGTCAGGTAAATATTTCAAGTTGTAGAAAAAAAATATGTTCAACATAATGTAGAAAAAAAAATGTAAATATTTTGATCAAGAGAAGAGAAGGGGTTAAAAAAAGTGTCCTGATTTGTTCTGAATGGAACATGATAGGGTTATCAAAGAGAAGAGAGCTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGTCTTAGGAAGTTCCTCAGAACAAGACCACCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAA

mRNA sequence

ATGCCCACCGCTAACAGATGGTTAAAGCCGGAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGTTGCAGCTTTTTAGAAACATAACCACCAATCCTGAAGTCAGGGTTATCAAAGAGAAGAGAGCTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGTCTTAGGAAGTTCCTCAGAACAAGACCACCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAA

Coding sequence (CDS)

ATGCCCACCGCTAACAGATGGTTAAAGCCGGAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGTTGCAGCTTTTTAGAAACATAACCACCAATCCTGAAGTCAGGGTTATCAAAGAGAAGAGAGCTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGTCTTAGGAAGTTCCTCAGAACAAGACCACCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAA

Protein sequence

MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFLRTRPPQIMPSINKFFSDPN
BLAST of Cla022707 vs. TrEMBL
Match: A0A0A0LMX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350420 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 5.8e-41
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 1

Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M TANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNPEVRVIKE+RAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

BLAST of Cla022707 vs. TrEMBL
Match: A0A0B0NLL4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_19724 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 7.4e-36
Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 1

Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M +ANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNPEVRV KE RAAGVL+NFEEGEK
Sbjct: 1  MASANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVTKENRAAGVLNNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDP 89
          YAEHGLRKF+R R PQIMPS+N FFSDP
Sbjct: 61 YAEHGLRKFVRNRQPQIMPSVNNFFSDP 88

BLAST of Cla022707 vs. TrEMBL
Match: A0A0D2RN01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G172200 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-35
Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 1

Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M +ANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNP+VRV KE RAAGVL+NFEEGEK
Sbjct: 1  MASANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPDVRVTKENRAAGVLNNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDP 89
          YAEHGLRKF+R R PQIMPS+N FFSDP
Sbjct: 61 YAEHGLRKFVRNRQPQIMPSVNNFFSDP 88

BLAST of Cla022707 vs. TrEMBL
Match: D7TAM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02450 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-34
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 1

Query: 3  TANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYA 62
          T NRWL+PEVYPLFAAVGVAVGICG+QL RNI TNPEVRV K+ R AGVL+NFEEGE+YA
Sbjct: 5  TVNRWLRPEVYPLFAAVGVAVGICGMQLVRNICTNPEVRVTKQNRTAGVLENFEEGERYA 64

Query: 63 EHGLRKFLRTRPPQIMPSINKFFSDPN 90
          EH LRKF+R + PQIMPSINKFFSDPN
Sbjct: 65 EHRLRKFVRNKEPQIMPSINKFFSDPN 91

BLAST of Cla022707 vs. TrEMBL
Match: A0A059B7Z3_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04674 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.1e-34
Identity = 69/86 (80.23%), Postives = 79/86 (91.86%), Query Frame = 1

Query: 3   TANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYA 62
           TANRW++PEV+PLFAAVGVAVGICG+QL RNI TNPEVRV KEKRAAGVLDNF EGEKY+
Sbjct: 49  TANRWIRPEVFPLFAAVGVAVGICGMQLIRNICTNPEVRVTKEKRAAGVLDNFAEGEKYS 108

Query: 63  EHGLRKFLRTRPPQIMPSINKFFSDP 89
           +H +R+F+R RPPQ+MPSIN FFSDP
Sbjct: 109 QHVVRRFVRNRPPQVMPSINNFFSDP 134

BLAST of Cla022707 vs. NCBI nr
Match: gi|449450387|ref|XP_004142944.1| (PREDICTED: uncharacterized protein LOC101222643 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 8.4e-41
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 1

Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M TANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNPEVRVIKE+RAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

BLAST of Cla022707 vs. NCBI nr
Match: gi|1009152981|ref|XP_015894389.1| (PREDICTED: uncharacterized protein LOC107428374 [Ziziphus jujuba])

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-37
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M T NRWL+PEVYPLFA+VGVAVGICG+QL RNITTNPEVRV KE RAAGVLDN +EGEK
Sbjct: 1  MATVNRWLRPEVYPLFASVGVAVGICGMQLVRNITTNPEVRVTKENRAAGVLDNHKEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLR RPPQIMPSIN FFSDPN
Sbjct: 61 YAEHGLRKFLRNRPPQIMPSINNFFSDPN 89

BLAST of Cla022707 vs. NCBI nr
Match: gi|728833246|gb|KHG12689.1| (Uncharacterized protein F383_19724 [Gossypium arboreum])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 1

Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M +ANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNPEVRV KE RAAGVL+NFEEGEK
Sbjct: 1  MASANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVTKENRAAGVLNNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDP 89
          YAEHGLRKF+R R PQIMPS+N FFSDP
Sbjct: 61 YAEHGLRKFVRNRQPQIMPSVNNFFSDP 88

BLAST of Cla022707 vs. NCBI nr
Match: gi|823158763|ref|XP_012479217.1| (PREDICTED: uncharacterized protein LOC105794543 [Gossypium raimondii])

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-35
Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 1

Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M +ANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNP+VRV KE RAAGVL+NFEEGEK
Sbjct: 1  MASANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPDVRVTKENRAAGVLNNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDP 89
          YAEHGLRKF+R R PQIMPS+N FFSDP
Sbjct: 61 YAEHGLRKFVRNRQPQIMPSVNNFFSDP 88

BLAST of Cla022707 vs. NCBI nr
Match: gi|672162216|ref|XP_008800943.1| (PREDICTED: uncharacterized protein LOC103715180 [Phoenix dactylifera])

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-35
Identity = 72/87 (82.76%), Postives = 80/87 (91.95%), Query Frame = 1

Query: 3   TANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYA 62
           T +RWLKPEVYPLFAAVGVAVGICG+QL RNITTNPEVRV K+ RAAGVLDNF EGEKYA
Sbjct: 35  TTSRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGVLDNFAEGEKYA 94

Query: 63  EHGLRKFLRTRPPQIMPSINKFFSDPN 90
           EHGLRKF+R + P+IMPS+NKFFS+PN
Sbjct: 95  EHGLRKFIRNKSPEIMPSVNKFFSNPN 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LMX7_CUCSA5.8e-4193.26Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350420 PE=4 SV=1[more]
A0A0B0NLL4_GOSAR7.4e-3684.09Uncharacterized protein OS=Gossypium arboreum GN=F383_19724 PE=4 SV=1[more]
A0A0D2RN01_GOSRA1.6e-3582.95Uncharacterized protein OS=Gossypium raimondii GN=B456_005G172200 PE=4 SV=1[more]
D7TAM5_VITVI1.8e-3481.61Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02450 PE=4 SV=... [more]
A0A059B7Z3_EUCGR3.1e-3480.23Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04674 PE=4 ... [more]
Match NameE-valueIdentityDescription
gi|449450387|ref|XP_004142944.1|8.4e-4193.26PREDICTED: uncharacterized protein LOC101222643 [Cucumis sativus][more]
gi|1009152981|ref|XP_015894389.1|1.9e-3786.52PREDICTED: uncharacterized protein LOC107428374 [Ziziphus jujuba][more]
gi|728833246|gb|KHG12689.1|1.1e-3584.09Uncharacterized protein F383_19724 [Gossypium arboreum][more]
gi|823158763|ref|XP_012479217.1|2.4e-3582.95PREDICTED: uncharacterized protein LOC105794543 [Gossypium raimondii][more]
gi|672162216|ref|XP_008800943.1|2.4e-3582.76PREDICTED: uncharacterized protein LOC103715180 [Phoenix dactylifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010530B12D
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005777 peroxisome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU41360watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022707Cla022707.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU41360WMU41360transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010530NADH-ubiquinone reductase complex 1 MLRQ subunitPFAMPF06522B12Dcoord: 9..76
score: 2.4
NoneNo IPR availablePANTHERPTHR33417FAMILY NOT NAMEDcoord: 3..89
score: 7.2
NoneNo IPR availablePANTHERPTHR33417:SF3SUBFAMILY NOT NAMEDcoord: 3..89
score: 7.2

The following gene(s) are paralogous to this gene:

None