CmoCh04G030720 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G030720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protein binding / ubiquitin-protein ligase/ zinc ion binding
Location	Cmo_Chr04 : 21441556 .. 21444274 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTTGTTTTCCGTGGAACACGAGTTCCAGACATAGAAAATGGTCTCCCTGGATTTATACCTGAGCGGCGTGCAATGGTATGCTCGATATTTGAATGACTTTACGTTTTCAATACCAATGCTCAGAAATTTTTGTTTAAAATATATTTTCTTTCTTCTCCCAATCAGCGTGTTCATGCAGCACGCCCTGTTAACTCGAACTCACTTGCCTTTCTTGTCACAGGTACCATTTCACCTATATTCATGACTGATTTCTGTTTCATGTGATAATTTTGATCTATTGCGTTGGTTTTACTCCTTGACTTTGTTTCAGTTCTTCTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAACTTTCTGGTAAATTTCGCTTACCACACTGTGATTGTTTAGTAGTTTTTAACCCTTGATGCAAATATTTACATTTTCTTCTTCTGAAAATGCATATTTAGCTCTGGCTTGTGCTTGGTGTGTTTTTAATGGCTACAACATTAAGGATGTACGCGACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGTCTTCTGGGTCACACTGAATTGAGGTTGCATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATAGGGAATTTGATGATTTAGGTGTGGTTCAAATCTATACAATGCAGTTTCTTAGCTTAGAATTAGTCAAACATGGCCACTATTCTTTGATATTCTTCTAGTGTACCGATGTGAGATCCCATGTTGGTTGAAGAGGAGAACGAAGCATTTCTTATAAAAGGTGTGGAAACCTCTCCATAGCAGATGTGAGCCTTGAGAGGAATTCCGAATTGGGAAAGCCCAAAGGGGGCAATATGGGCTAGCGGTGAGCTTGGGCTGTTACAAATGGTATCAGAGCTAGACAACGGGTAGTGTGTCAGTAAGGACGCTGGGCCCCCAAGGTGAGTGGATTGTGAGATCTCACATCAGTTGGAGAGGGAAACGAATCATTTCTAATAAAATGTGTAAACCTCTCCCTAGCAGACGCGTTTTAAAACCTTGAGGAGAAGACCGAACAAGAAAGCCTAAAAAGGACAATATTGGCTAGCGGTGGGGCAGTGTGCCAGCGAGGACGTTGGGCCCCAAGGTGGGTAGATTGTGAGATCCTACATCAATTGGAGAGGGGAACGAAGCATCCCTTATAAAAGGTGTGGAAACCTCTCCCAATAGACGCGTTTTAAAACCTTGAGGGGAAGGTCGAAAGGAAAAGCCCAAAGAAGACAATATCTGCTAGCGAGCTTGGGTTGTTACAACCGATTTCACCTATTTCTCGGCACAGACTCTTTTCTATTGTGTTGATTAGTTAAGGAAGGAAAGTTTCCTATATATTCTTGTCTATGACACTGTCTTAACATATCATTTTTCTTCAGACTATGAAACTTTGAGAGCTTTGGATTCTGACAATGTTCCAACAACACCGTCAATGAGCGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGGTAATCCATAATTAATTAGTGCATCTTATCTGTTATACTCTAGCTTATGCCCAAAAAACTCAAATTAAGTTATCTTTAAATTATGGGCAGCGACCCTGCTGCGAATCAACAAGCTTCATCTTCAGAATCCAATGAGGTATCCACCAACTTACTCGTTTTGTAATGCAGAACACACAAAGAAGGCCTAAATTTTGTAGTGTTCTTGATTCTTATCATCAATTTTCAAGTACGTTTTATTCTTTTGCAGAAGAGACCAGATTCAGTCAATGCAGTTAGCGGTACCAAGTCCTTACAGGATGAACTTACATGCAGTGTTTGCTTAGAGCAAGTAAATGTTGGTGAACTCATACGCAGTTTGCCATGTTTGCATCAGGTTTATCTCTCTGTCTCTCTCTTTGCCTGCTGTTAGACAAACACGACTCTCCACGATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGACTTTGCTTTGGGCTTTCCCAAAAGGCCTCATACCAATGGAAAGAGTATTCTTTGATTATAAACCCGTGATCATTCCCTAAATTAGCCAATGTGGGACTTTCATCATCCAACACCTACCCTTCTGAAGAAATAATCGCAGATATTTCATGTTGGAAGTAGATGTGTGAGATCCTACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTAGAAACCTCTACCTAGTAGACGTGTTTTAAAAACCTTGAGGAGAAGTCCAAAGAGGACAATATGTGCTTGGGCTGTTACAAAATGAACTTCTGTTCGTTTCCTTTCATTTTAGTATTCGAAGCCTCTCTTCCGTTTAATCTCGATACATGAGTTCAATGTTGTAGTTCCATGCGAACTGCATAGATCCGTGGCTGGGGCAGCAGGGAACATGTCCTGTTTGCAAATTCAGAGCGGTGCCCGGGTGGTCGGAGCAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAATTATACGAACCGCGGTGGTGTAGTTAGGTAGTGTCTGAGCTTGTGCGTGAGCAGAATTTTGTTGTTGCATAATCATCCATGTATTATTCCAACCCCTATTAGCAAGCACTTGTTACCTCTGCAACTTATTCCAGGTATTATTATTGTTACTTCAACTCAAATTCTTATTACTCTC

mRNA sequence

ATGAGTTTTGTTTTCCGTGGAACACGAGTTCCAGACATAGAAAATGGTCTCCCTGGATTTATACCTGAGCGGCGTGCAATGCGTGTTCATGCAGCACGCCCTGTTAACTCGAACTCACTTGCCTTTCTTGTCACAGTTCTTCTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAACTTTCTGCTCTGGCTTGTGCTTGGTGTGTTTTTAATGGCTACAACATTAAGGATGTACGCGACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGTCTTCTGGGTCACACTGAATTGAGGTTGCATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATAGGGAATTTGATGATTTAGACTATGAAACTTTGAGAGCTTTGGATTCTGACAATGTTCCAACAACACCGTCAATGAGCGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCTGCTGCGAATCAACAAGCTTCATCTTCAGAATCCAATGAGAAGAGACCAGATTCAGTCAATGCAGTTAGCGGTACCAAGTCCTTACAGGATGAACTTACATGCAGTGTTTGCTTAGAGCAATTCCATGCGAACTGCATAGATCCGTGGCTGGGGCAGCAGGGAACATGTCCTGTTTGCAAATTCAGAGCGGTGCCCGGGTGGTCGGAGCAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAATTATACGAACCGCGGTGGTGTAGTTAGGTAGTGTCTGAGCTTGTGCGTGAGCAGAATTTTGTTGTTGCATAATCATCCATGTATTATTCCAACCCCTATTAGCAAGCACTTGTTACCTCTGCAACTTATTCCAGGTATTATTATTGTTACTTCAACTCAAATTCTTATTACTCTC

Coding sequence (CDS)

ATGAGTTTTGTTTTCCGTGGAACACGAGTTCCAGACATAGAAAATGGTCTCCCTGGATTTATACCTGAGCGGCGTGCAATGCGTGTTCATGCAGCACGCCCTGTTAACTCGAACTCACTTGCCTTTCTTGTCACAGTTCTTCTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAACTTTCTGCTCTGGCTTGTGCTTGGTGTGTTTTTAATGGCTACAACATTAAGGATGTACGCGACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGTCTTCTGGGTCACACTGAATTGAGGTTGCATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATAGGGAATTTGATGATTTAGACTATGAAACTTTGAGAGCTTTGGATTCTGACAATGTTCCAACAACACCGTCAATGAGCGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCTGCTGCGAATCAACAAGCTTCATCTTCAGAATCCAATGAGAAGAGACCAGATTCAGTCAATGCAGTTAGCGGTACCAAGTCCTTACAGGATGAACTTACATGCAGTGTTTGCTTAGAGCAATTCCATGCGAACTGCATAGATCCGTGGCTGGGGCAGCAGGGAACATGTCCTGTTTGCAAATTCAGAGCGGTGCCCGGGTGGTCGGAGCAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAA

Homology

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BLAST of CmoCh04G030720 vs. Swiss-Prot
Match: SDIR1_ARATH (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 9.4e-101
Identity = 204/273 (74.73%), Postives = 219/273 (80.22%), Query Frame = 1


Query: 1   MSFVFRGTRVPDIENGLPG-FIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMS 60
           MSFVFRG+R  D+E+G  G F+PERRAMRVH ARPVNSNSLAFLVTVLLLFMILNSHQM 
Sbjct: 1   MSFVFRGSR-GDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMP 60

Query: 61  PNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATR 120
           PNFLLWLVLGVFLMATTLRMYATCQQLQA AQA+A AASGL  HTELRLH+PPSIALATR
Sbjct: 61  PNFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATR 120

Query: 121 GRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSD 180
           GRLQGLRLQLALLDREFDDLDYETLRALDSDNV TT SMSEE+INALPVHKYKV  P++ 
Sbjct: 121 GRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTT-SMSEEEINALPVHKYKVLDPENG 180

Query: 181 PAANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLE---------------QFHAN 240
            +  +QAS+S S EK  DS N     K  +DELTCSVCLE               QFHA 
Sbjct: 181 CSLAKQASTSSSAEKMLDSAN--ESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAG 240

Query: 241 CIDPWLGQQGTCPVCKFRAVPGWSEQGQGETDA 258
           CIDPWL QQGTCPVCKFRA  GW EQ + + DA
Sbjct: 241 CIDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDA 269

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BLAST of CmoCh04G030720 vs. Swiss-Prot
Match: DZIP3_MOUSE (E3 ubiquitin-protein ligase DZIP3 OS=Mus musculus GN=Dzip3 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 5.2e-06
Identity = 29/114 (25.44%), Postives = 52/114 (45.61%), Query Frame = 1


Query: 136  FDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDPAANQQASSSES---- 195
            FD++ Y+  + ++     +    +++  NA P H         DP + Q +++ E     
Sbjct: 1075 FDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHTASQPNAPQDPKSAQGSATWEGDKDM 1134

Query: 196  -NEKRPDSVNAVSGTKSLQDELTCSVCLEQFHANCIDPWLGQQGTCPVCKFRAV 245
             NE+  +    +       + L+   C  +FH+ CI PWL QQGTCP C+   +
Sbjct: 1135 DNEEEEEEPCVICHENLSPENLSVLPCAHKFHSQCIRPWLMQQGTCPTCRLHVL 1188

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BLAST of CmoCh04G030720 vs. Swiss-Prot
Match: RNF43_HUMAN (E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.8e-06
Identity = 31/84 (36.90%), Postives = 41/84 (48.81%), Query Frame = 1


Query: 185 QASSSESNEKRPDSVNAVSGTK---------SLQDELTCSVCLEQFHANCIDPWLGQQGT 244
           QAS  ++  + PDS ++ S            S   EL    CL +FH NC+DPWL Q  T
Sbjct: 249 QASCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRT 308

Query: 245 CPVCKFRAVPGWS-EQGQGETDAY 259
           CP+C F    G S  Q  G + +Y
Sbjct: 309 CPLCMFNITEGDSFSQSLGPSRSY 332

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BLAST of CmoCh04G030720 vs. TrEMBL
Match: E5GC70_CUCME (Protein binding protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 6.1e-131
Identity = 247/275 (89.82%), Postives = 250/275 (90.91%), Query Frame = 1


Query: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60
           MSFVFRGTRVPDIENGL GFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDN PTTPSMSEEQINALPVHKYKVSGPQSD 
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 180

Query: 181 AANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLE---------------QFHANC 240
           + NQQASSSESNEKR DSVNAV  TK+ +DELTCSVCLE               QFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLGQQGTCPVCKFRAVPGWSEQGQGETDAYMV 261
           IDPWL QQGTCPVCKFRAV GWSEQGQGETDAYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275

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BLAST of CmoCh04G030720 vs. TrEMBL
Match: A0A0A0KBF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008630 PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 5.7e-129
Identity = 245/275 (89.09%), Postives = 248/275 (90.18%), Query Frame = 1


Query: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60
           MSFVFRGTRVPDIENGL GFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP
Sbjct: 126 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 185

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG
Sbjct: 186 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 245

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDN PTTPSMSEEQINALPVHKYKVSGPQSD 
Sbjct: 246 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 305

Query: 181 AANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLE---------------QFHANC 240
           + NQQASSSES EKR DSVNAV  TK+ +DELTCSVCLE               QFHANC
Sbjct: 306 SVNQQASSSESIEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 365

Query: 241 IDPWLGQQGTCPVCKFRAVPGWSEQGQGETDAYMV 261
           IDPWL QQGTCPVCKFRAV GWSEQ QGETDAYMV
Sbjct: 366 IDPWLRQQGTCPVCKFRAVSGWSEQEQGETDAYMV 400

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BLAST of CmoCh04G030720 vs. TrEMBL
Match: D7TLR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01960 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 8.9e-114
Identity = 221/276 (80.07%), Postives = 235/276 (85.14%), Query Frame = 1


Query: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60
           MSFVFRG+R  DIE+G PGFIPERRA+RVHAARPVN+NSLAFLVTVLLLFMILNSHQMSP
Sbjct: 1   MSFVFRGSRA-DIESGFPGFIPERRAVRVHAARPVNTNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120
           NFL+WLVLG+FLMATTLRMYATCQQLQAQAQA A AASGLLGHTELRLHMPPSIALATRG
Sbjct: 61  NFLIWLVLGIFLMATTLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDS+NVPTTPSMSEE+INALPVHKYKV+G Q   
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSENVPTTPSMSEEEINALPVHKYKVAGTQGGG 180

Query: 181 AANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLE---------------QFHANC 240
           ++ QQ SSS S EK+ D  NAV+ TK+  DELTCSVCLE               QFHANC
Sbjct: 181 SSMQQGSSSASAEKKQDINNAVASTKAPDDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLGQQGTCPVCKFRAVPGWSEQGQGETDA-YMV 261
           IDPWL QQGTCPVCKFRA PGW E GQG  DA YMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAAPGWQENGQGGMDASYMV 275

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BLAST of CmoCh04G030720 vs. TrEMBL
Match: A0A151RQE1_CAJCA (Protein goliath OS=Cajanus cajan GN=KK1_033735 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 4.6e-110
Identity = 214/269 (79.55%), Postives = 226/269 (84.01%), Query Frame = 1


Query: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60
           MSFVFRGTR  DIENG PGFIPERRA+RVHAARP NSNSL FLVTVLLLFMILNSHQMSP
Sbjct: 1   MSFVFRGTRA-DIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120
           NFLLWLVLGVFLMAT LRMYATCQQLQAQAQA A AASG+LGHTELRLHMPPSIALA+RG
Sbjct: 61  NFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDNV T PSM+EE+INALPVHKYKVSGPQS  
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQSSS 180

Query: 181 AANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLE---------------QFHANC 240
           ++ QQASSS S EK+ D+ NAV   K+  DELTCSVCLE               QFHANC
Sbjct: 181 SSMQQASSSASVEKKQDNSNAVGSMKASDDELTCSVCLEQVNVGDVLRSLPCLHQFHANC 240

Query: 241 IDPWLGQQGTCPVCKFRAVPGWSEQGQGE 255
           IDPWL QQGTCPVCKFRA  GW+E G  +
Sbjct: 241 IDPWLRQQGTCPVCKFRAGSGWNENGHND 268

[Close]

BLAST of CmoCh04G030720 vs. TrEMBL
Match: A0A061FLU6_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_042713 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 3.0e-109
Identity = 216/275 (78.55%), Postives = 232/275 (84.36%), Query Frame = 1


Query: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60
           MSFVFRGTR  D+E+GLPGFIPERRA+RVHA RPVNSNSL FLVTVLLLFMILNSHQMSP
Sbjct: 1   MSFVFRGTR-SDLESGLPGFIPERRAVRVHAGRPVNSNSLVFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQA A AASGLLGHTELRLHMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALD+DNVPT  SMSEE+INALPVHKYKVS PQSD 
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDADNVPTATSMSEEEINALPVHKYKVSAPQSD- 180

Query: 181 AANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLE---------------QFHANC 240
           ++ QQASSS S +K+ D+ N V G K  +DELTCS+CLE               QFHA+C
Sbjct: 181 SSMQQASSSNSPQKKHDTSNPVCGMKGSEDELTCSICLEQVSVGDLIRSLPCLHQFHASC 240

Query: 241 IDPWLGQQGTCPVCKFRAVPGWSEQGQGETDAYMV 261
           IDPWL QQGTCPVCKFRA  GW E G+ +  +YMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAGSGWHETGEIDA-SYMV 272

[Close]

BLAST of CmoCh04G030720 vs. TAIR10
Match: AT3G55530.1 (AT3G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 367.9 bits (943), Expect = 5.3e-102
Identity = 204/273 (74.73%), Postives = 219/273 (80.22%), Query Frame = 1


Query: 1   MSFVFRGTRVPDIENGLPG-FIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMS 60
           MSFVFRG+R  D+E+G  G F+PERRAMRVH ARPVNSNSLAFLVTVLLLFMILNSHQM 
Sbjct: 1   MSFVFRGSR-GDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMP 60

Query: 61  PNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATR 120
           PNFLLWLVLGVFLMATTLRMYATCQQLQA AQA+A AASGL  HTELRLH+PPSIALATR
Sbjct: 61  PNFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATR 120

Query: 121 GRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSD 180
           GRLQGLRLQLALLDREFDDLDYETLRALDSDNV TT SMSEE+INALPVHKYKV  P++ 
Sbjct: 121 GRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTT-SMSEEEINALPVHKYKVLDPENG 180

Query: 181 PAANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLE---------------QFHAN 240
            +  +QAS+S S EK  DS N     K  +DELTCSVCLE               QFHA 
Sbjct: 181 CSLAKQASTSSSAEKMLDSAN--ESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAG 240

Query: 241 CIDPWLGQQGTCPVCKFRAVPGWSEQGQGETDA 258
           CIDPWL QQGTCPVCKFRA  GW EQ + + DA
Sbjct: 241 CIDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDA 269

[Close]

BLAST of CmoCh04G030720 vs. TAIR10
Match: AT1G04790.1 (AT1G04790.1 RING/U-box superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-07
Identity = 34/109 (31.19%), Postives = 50/109 (45.87%), Query Frame = 1


Query: 132 LDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDPAANQQASSSES 191
           +DR+F + DYE L ALD +N                 H++   G  S    N    S+  
Sbjct: 542 MDRDFTEDDYELLLALDENN-----------------HRH---GGASANRINNLPESTVQ 601

Query: 192 NEKRPDSVNAVSGTKSLQDELTCSVCLEQFHANCIDPWLGQQGTCPVCK 241
            +   ++      T  + D +    CL +FH +CIDPWLG+  +CPVCK
Sbjct: 602 TDNFQETCVICLETPKIGDTIRHLPCLHKFHKDCIDPWLGRSKSCPVCK 630

[Close]

BLAST of CmoCh04G030720 vs. NCBI nr
Match: gi|659081532|ref|XP_008441380.1| (PREDICTED: E3 ubiquitin-protein ligase SDIR1 [Cucumis melo])

HSP 1 Score: 474.9 bits (1221), Expect = 8.8e-131
Identity = 247/275 (89.82%), Postives = 250/275 (90.91%), Query Frame = 1


Query: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60
           MSFVFRGTRVPDIENGL GFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDN PTTPSMSEEQINALPVHKYKVSGPQSD 
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 180

Query: 181 AANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLE---------------QFHANC 240
           + NQQASSSESNEKR DSVNAV  TK+ +DELTCSVCLE               QFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLGQQGTCPVCKFRAVPGWSEQGQGETDAYMV 261
           IDPWL QQGTCPVCKFRAV GWSEQGQGETDAYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275

[Close]

BLAST of CmoCh04G030720 vs. NCBI nr
Match: gi|449441410|ref|XP_004138475.1| (PREDICTED: E3 ubiquitin-protein ligase SDIR1 [Cucumis sativus])

HSP 1 Score: 468.4 bits (1204), Expect = 8.2e-129
Identity = 245/275 (89.09%), Postives = 248/275 (90.18%), Query Frame = 1


Query: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60
           MSFVFRGTRVPDIENGL GFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDN PTTPSMSEEQINALPVHKYKVSGPQSD 
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 180

Query: 181 AANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLE---------------QFHANC 240
           + NQQASSSES EKR DSVNAV  TK+ +DELTCSVCLE               QFHANC
Sbjct: 181 SVNQQASSSESIEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLGQQGTCPVCKFRAVPGWSEQGQGETDAYMV 261
           IDPWL QQGTCPVCKFRAV GWSEQ QGETDAYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQEQGETDAYMV 275

[Close]

BLAST of CmoCh04G030720 vs. NCBI nr
Match: gi|700190528|gb|KGN45732.1| (hypothetical protein Csa_6G008630 [Cucumis sativus])

HSP 1 Score: 468.4 bits (1204), Expect = 8.2e-129
Identity = 245/275 (89.09%), Postives = 248/275 (90.18%), Query Frame = 1


Query: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60
           MSFVFRGTRVPDIENGL GFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP
Sbjct: 126 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 185

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG
Sbjct: 186 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 245

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDN PTTPSMSEEQINALPVHKYKVSGPQSD 
Sbjct: 246 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 305

Query: 181 AANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLE---------------QFHANC 240
           + NQQASSSES EKR DSVNAV  TK+ +DELTCSVCLE               QFHANC
Sbjct: 306 SVNQQASSSESIEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 365

Query: 241 IDPWLGQQGTCPVCKFRAVPGWSEQGQGETDAYMV 261
           IDPWL QQGTCPVCKFRAV GWSEQ QGETDAYMV
Sbjct: 366 IDPWLRQQGTCPVCKFRAVSGWSEQEQGETDAYMV 400

[Close]

BLAST of CmoCh04G030720 vs. NCBI nr
Match: gi|359486786|ref|XP_002283148.2| (PREDICTED: E3 ubiquitin-protein ligase SDIR1 isoform X2 [Vitis vinifera])

HSP 1 Score: 417.9 bits (1073), Expect = 1.3e-113
Identity = 221/276 (80.07%), Postives = 235/276 (85.14%), Query Frame = 1


Query: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60
           MSFVFRG+R  DIE+G PGFIPERRA+RVHAARPVN+NSLAFLVTVLLLFMILNSHQMSP
Sbjct: 1   MSFVFRGSRA-DIESGFPGFIPERRAVRVHAARPVNTNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120
           NFL+WLVLG+FLMATTLRMYATCQQLQAQAQA A AASGLLGHTELRLHMPPSIALATRG
Sbjct: 61  NFLIWLVLGIFLMATTLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDS+NVPTTPSMSEE+INALPVHKYKV+G Q   
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSENVPTTPSMSEEEINALPVHKYKVAGTQGGG 180

Query: 181 AANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLE---------------QFHANC 240
           ++ QQ SSS S EK+ D  NAV+ TK+  DELTCSVCLE               QFHANC
Sbjct: 181 SSMQQGSSSASAEKKQDINNAVASTKAPDDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLGQQGTCPVCKFRAVPGWSEQGQGETDA-YMV 261
           IDPWL QQGTCPVCKFRA PGW E GQG  DA YMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAAPGWQENGQGGMDASYMV 275

[Close]

BLAST of CmoCh04G030720 vs. NCBI nr
Match: gi|731412956|ref|XP_010658542.1| (PREDICTED: E3 ubiquitin-protein ligase SDIR1 isoform X1 [Vitis vinifera])

HSP 1 Score: 413.3 bits (1061), Expect = 3.1e-112
Identity = 221/277 (79.78%), Postives = 235/277 (84.84%), Query Frame = 1


Query: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60
           MSFVFRG+R  DIE+G PGFIPERRA+RVHAARPVN+NSLAFLVTVLLLFMILNSHQMSP
Sbjct: 1   MSFVFRGSRA-DIESGFPGFIPERRAVRVHAARPVNTNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120
           NFL+WLVLG+FLMATTLRMYATCQQLQAQAQA A AASGLLGHTELRLHMPPSIALATRG
Sbjct: 61  NFLIWLVLGIFLMATTLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDS+NVPTTPSMSEE+INALPVHKYKV+G Q   
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSENVPTTPSMSEEEINALPVHKYKVAGTQGGG 180

Query: 181 AANQQASSSESNE-KRPDSVNAVSGTKSLQDELTCSVCLE---------------QFHAN 240
           ++ QQ SSS S E K+ D  NAV+ TK+  DELTCSVCLE               QFHAN
Sbjct: 181 SSMQQGSSSASAEQKKQDINNAVASTKAPDDELTCSVCLEQVNVGELIRSLPCLHQFHAN 240

Query: 241 CIDPWLGQQGTCPVCKFRAVPGWSEQGQGETDA-YMV 261
           CIDPWL QQGTCPVCKFRA PGW E GQG  DA YMV
Sbjct: 241 CIDPWLRQQGTCPVCKFRAAPGWQENGQGGMDASYMV 276

The following BLAST results are available for this feature:

BLAST of CmoCh04G030720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDIR1_ARATH	9.4e-101	74.73	E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1	[more]
DZIP3_MOUSE	5.2e-06	25.44	E3 ubiquitin-protein ligase DZIP3 OS=Mus musculus GN=Dzip3 PE=1 SV=2	[more]
RNF43_HUMAN	8.8e-06	36.90	E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1 SV=1	[more]

BLAST of CmoCh04G030720 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC70_CUCME	6.1e-131	89.82	Protein binding protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KBF9_CUCSA	5.7e-129	89.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008630 PE=4 SV=1	[more]
D7TLR3_VITVI	8.9e-114	80.07	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01960 PE=4 SV=...	[more]
A0A151RQE1_CAJCA	4.6e-110	79.55	Protein goliath OS=Cajanus cajan GN=KK1_033735 PE=4 SV=1	[more]
A0A061FLU6_THECC	3.0e-109	78.55	RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_042713 PE=4 S...	[more]

BLAST of CmoCh04G030720 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G55530.1	5.3e-102	74.73	RING/U-box superfamily protein	[more]
AT1G04790.1	3.8e-07	31.19	RING/U-box superfamily protein	[more]

BLAST of CmoCh04G030720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081532\|ref\|XP_008441380.1\|	8.8e-131	89.82	PREDICTED: E3 ubiquitin-protein ligase SDIR1 [Cucumis melo]	[more]
gi\|449441410\|ref\|XP_004138475.1\|	8.2e-129	89.09	PREDICTED: E3 ubiquitin-protein ligase SDIR1 [Cucumis sativus]	[more]
gi\|700190528\|gb\|KGN45732.1\|	8.2e-129	89.09	hypothetical protein Csa_6G008630 [Cucumis sativus]	[more]
gi\|359486786\|ref\|XP_002283148.2\|	1.3e-113	80.07	PREDICTED: E3 ubiquitin-protein ligase SDIR1 isoform X2 [Vitis vinifera]	[more]
gi\|731412956\|ref\|XP_010658542.1\|	3.1e-112	79.78	PREDICTED: E3 ubiquitin-protein ligase SDIR1 isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009789	positive regulation of abscisic acid-activated signaling pathway
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0009086	methionine biosynthetic process
biological_process	GO:0006301	postreplication repair
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G030720.1	CmoCh04G030720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 213..240 score: 2.
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 195..241 score: 8.
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 44..256 score: 3.6E
None	No IPR available	PANTHER	PTHR22763:SF30	E3 UBIQUITIN-PROTEIN LIGASE SDIR1	coord: 44..256 score: 3.6E
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 207..249 score: 2.86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G030720	Cucsa.136110	Cucumber (Gy14) v1	cgycmoB0371
CmoCh04G030720	CmaCh04G029470	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G030720	CmaCh15G000980	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G030720	Cla006536	Watermelon (97103) v1	cmowmB731
CmoCh04G030720	Csa6G008630	Cucumber (Chinese Long) v2	cmocuB759
CmoCh04G030720	MELO3C008223	Melon (DHL92) v3.5.1	cmomeB671
CmoCh04G030720	ClCG11G006780	Watermelon (Charleston Gray)	cmowcgB621
CmoCh04G030720	CSPI06G01130	Wild cucumber (PI 183967)	cmocpiB768
CmoCh04G030720	Lsi03G003670	Bottle gourd (USVL1VR-Ls)	cmolsiB645
CmoCh04G030720	Cp4.1LG13g10990	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G030720	Cp4.1LG01g25530	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G030720	MELO3C008223.2	Melon (DHL92) v3.6.1	cmomedB759
CmoCh04G030720	CsaV3_6G001260	Cucumber (Chinese Long) v3	cmocucB0899
CmoCh04G030720	Cla97C11G213740	Watermelon (97103) v2	cmowmbB697
CmoCh04G030720	Bhi04G001953	Wax gourd	cmowgoB0857
CmoCh04G030720	Carg06022	Silver-seed gourd	carcmoB0033
CmoCh04G030720	Carg02087	Silver-seed gourd	carcmoB0370

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G030720	Cucumber (Gy14) v2	cgybcmoB816
CmoCh04G030720	Cucurbita moschata (Rifu)	cmocmoB261