CmoCh04G030060 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G030060
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Pentatricopeptide repeat-containing protein) (3.4.24.-) (3.6.4.3)
LocationCmo_Chr04 : 21145431 .. 21146017 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAAGTGAATCATATAAGTATCTGAAATGCAGTGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGTAAGGAAGGTTTTTTTTCAGGGTGGAAGAAAGAGGTTTAGTACCTTGGACCACCCTGGTGACTGCTTATTCTCAATGTTTTGAATGGGACAAAGCAATAGAAATCTTCTCAAATATGAGAAGAGAAGGCTTTACACCCAATCAATTCTCATTTTCTAGCATGCTCGTTTCATGTGCCAGCCTTTGCTTACTCGAGTACGTCCACAAGAAGTCCATGGTATCCCCTGCAAGGTTGGCTTGGATATGAATAAAATGCATAGAAAGTGCTCTGATTGACATGTATGCCAAATGCAGCAGTCTGGCCGAGGTGAAAGAAGGTTTTCGATAGAATCTCTAATGCCGATACAGTTTTGTGGACTGCTATAATATCAGGTCATGCTCAACACGATATTGTGGAGGGCACTCTTTGA

mRNA sequence

ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAAGTGAATCATATAATGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGTAAGGAAGGTTTTCGATAGAATCTCTAATGCCGATACAGTTTTGTGGACTGCTATAATATCAGGTCATGCTCAACACGATATTGTGGAGGGCACTCTTTGA

Coding sequence (CDS)

ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAAGTGAATCATATAATGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGTAAGGAAGGTTTTCGATAGAATCTCTAATGCCGATACAGTTTTGTGGACTGCTATAATATCAGGTCATGCTCAACACGATATTGTGGAGGGCACTCTTTGA
Homology
[Close]
BLAST of CmoCh04G030060 vs. Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.7e-10
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEV----NHIMANAYAKRGS 60
           M ++     H++Y S+F A +     E GK VHA  IKSG ++     + + + YAK GS
Sbjct: 253 MLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 312

Query: 61  QDDVRKVFDRISNADTVLWTAIISGHAQH 81
             D RK+FDR++  D V W ++++ +AQH
Sbjct: 313 IHDARKIFDRLAKRDVVSWNSLLTAYAQH 341

[Close]
BLAST of CmoCh04G030060 vs. Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 4.8e-09
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHA----QAIKSGLEVNHIMANAYAKRGS 60
           M QN I  D YT+ SVF A +     E GK+ HA    + IKS + V+  + + Y K  S
Sbjct: 200 MRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSS 259

Query: 61  QDDVRKVFDRISNADTVLWTAIISGHAQHDIVEGTL 88
             D  +VFD++S  + + WT++ISG+  H  V   L
Sbjct: 260 FSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVL 295

[Close]
BLAST of CmoCh04G030060 vs. Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-08
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 9   DHYTYCSVFNAIAES-----GKKVHAQAIKSGL--EVNHIMANAYAK---RGSQDDVRKV 68
           D +T  SVF+A AE      GK++H+ AI+SGL  +V   + + YAK    GS DD RKV
Sbjct: 268 DKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKV 327

Query: 69  FDRISNADTVLWTAIISGHAQH 81
           FDR+ +   + WTA+I+G+ ++
Sbjct: 328 FDRMEDHSVMSWTALITGYMKN 349

[Close]
BLAST of CmoCh04G030060 vs. Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.0e-08
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 9   DHYTYCSVFNAIAES-----GKKVHA----QAIKSGLEVNHIMANAYAKRGSQDDVRKVF 68
           + +T CS+  A +E      G++VH+    + IK+ + V   + + YAK G   D RKVF
Sbjct: 283 NEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVF 342

Query: 69  DRISNADTVLWTAIISGHAQHDIVE 85
           D +SN +TV WT+II+ HA+    E
Sbjct: 343 DGMSNRNTVTWTSIIAAHAREGFGE 367

[Close]
BLAST of CmoCh04G030060 vs. Swiss-Prot
Match: PP345_ARATH (Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.1e-08
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1 

Query: 9   DHYTYCSVFNAIA-------ESGKKVHAQAIKSGLE----VNHIMANAYAKRGSQDDVRK 68
           + YT+ SV NAIA       + G++ HA  +K GL     V+  + + YAKRG+ D+  K
Sbjct: 471 NEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEK 530

Query: 69  VFDRISNADTVLWTAIISGHAQH 81
           VF+ +S  +  +WT+IIS ++ H
Sbjct: 531 VFNEMSQKNQFVWTSIISAYSSH 553

[Close]
BLAST of CmoCh04G030060 vs. TrEMBL
Match: A0A0A0KBQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013890 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRG 60
           MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLEVN++     +ANAYAK G
Sbjct: 353 MCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCG 412

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
           S +DVRKVF+R+ + D + WT++++ ++Q
Sbjct: 413 SLEDVRKVFNRMEDRDLISWTSLVTAYSQ 441

[Close]
BLAST of CmoCh04G030060 vs. TrEMBL
Match: F6HC58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02260 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-14
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIAES-----GKKVHAQAIKSGLE-----VNHIMANAYAKRG 60
           MCQN I  D YTYCSVFNAIA S     G+ VH   +K GL+     VN+ +A+AY+K G
Sbjct: 362 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 421

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQHDIVEGTL 88
             +DVRKVFDR+   D V WT +++ ++Q  + E  L
Sbjct: 422 FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEAL 458

[Close]
BLAST of CmoCh04G030060 vs. TrEMBL
Match: M5XS64_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014747mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-13
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIAES-----GKKVHAQAIKSGLE-----VNHIMANAYAKRG 60
           MC  +I  D YTYCSVFNAIAE      GK++H   +KSG+E     V++ +A+AYAK G
Sbjct: 286 MCLKNIQPDIYTYCSVFNAIAELKCLQFGKQIHGMVLKSGIEMKVTSVSNAIADAYAKCG 345

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
             +DV+KVFDRI   D V WT +++ ++Q
Sbjct: 346 LLEDVQKVFDRIEERDLVSWTTLVTAYSQ 374

[Close]
BLAST of CmoCh04G030060 vs. TrEMBL
Match: V4SCU5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004388mg PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-13
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSG-----LEVNHIMANAYAKRG 60
           MCQ +I  D YTYCS+FNAIA     + GK VH   +KSG     + V + +A+AYAK G
Sbjct: 363 MCQKNIKADVYTYCSLFNAIAALKYLQLGKAVHGIVLKSGSDVLVVSVYNAIADAYAKCG 422

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
           + +DVRKVFDR+   D V WT +++ H+Q
Sbjct: 423 ALEDVRKVFDRMGERDMVSWTTLVTAHSQ 451

[Close]
BLAST of CmoCh04G030060 vs. TrEMBL
Match: A0A166C0Z4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011897 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-13
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIAES-----GKKVHAQAIKSG-----LEVNHIMANAYAKRG 60
           MCQN+I  D YTYCSVFN I++      GK+VH   +KSG     L V + +A+AY+K G
Sbjct: 374 MCQNNIKSDIYTYCSVFNTISDLRYLWFGKQVHGLIVKSGCHVTVLSVINAIADAYSKCG 433

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
           S +DVRK+FDR+ + D V WT +++ ++Q
Sbjct: 434 SIEDVRKIFDRMEDRDIVSWTTLVNAYSQ 462

[Close]
BLAST of CmoCh04G030060 vs. TAIR10
Match: AT3G24000.1 (AT3G24000.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-11
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEV----NHIMANAYAKRGS 60
           M ++     H++Y S+F A +     E GK VHA  IKSG ++     + + + YAK GS
Sbjct: 253 MLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 312

Query: 61  QDDVRKVFDRISNADTVLWTAIISGHAQH 81
             D RK+FDR++  D V W ++++ +AQH
Sbjct: 313 IHDARKIFDRLAKRDVVSWNSLLTAYAQH 341

[Close]
BLAST of CmoCh04G030060 vs. TAIR10
Match: AT4G16470.1 (AT4G16470.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-10
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHA----QAIKSGLEVNHIMANAYAKRGS 60
           M QN I  D YT+ SVF A +     E GK+ HA    + IKS + V+  + + Y K  S
Sbjct: 200 MRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSS 259

Query: 61  QDDVRKVFDRISNADTVLWTAIISGHAQHDIVEGTL 88
             D  +VFD++S  + + WT++ISG+  H  V   L
Sbjct: 260 FSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVL 295

[Close]
BLAST of CmoCh04G030060 vs. TAIR10
Match: AT3G49170.1 (AT3G49170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-09
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 9   DHYTYCSVFNAIAES-----GKKVHAQAIKSGL--EVNHIMANAYAK---RGSQDDVRKV 68
           D +T  SVF+A AE      GK++H+ AI+SGL  +V   + + YAK    GS DD RKV
Sbjct: 268 DKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKV 327

Query: 69  FDRISNADTVLWTAIISGHAQH 81
           FDR+ +   + WTA+I+G+ ++
Sbjct: 328 FDRMEDHSVMSWTALITGYMKN 349

[Close]
BLAST of CmoCh04G030060 vs. TAIR10
Match: AT4G18520.1 (AT4G18520.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-09
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 9   DHYTYCSVFNAIAES-----GKKVHA----QAIKSGLEVNHIMANAYAKRGSQDDVRKVF 68
           + +T CS+  A +E      G++VH+    + IK+ + V   + + YAK G   D RKVF
Sbjct: 283 NEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVF 342

Query: 69  DRISNADTVLWTAIISGHAQHDIVE 85
           D +SN +TV WT+II+ HA+    E
Sbjct: 343 DGMSNRNTVTWTSIIAAHAREGFGE 367

[Close]
BLAST of CmoCh04G030060 vs. TAIR10
Match: AT4G32430.1 (AT4G32430.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 5.2e-09
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1 

Query: 9   DHYTYCSVFNAIA-------ESGKKVHAQAIKSGLE----VNHIMANAYAKRGSQDDVRK 68
           + YT+ SV NAIA       + G++ HA  +K GL     V+  + + YAKRG+ D+  K
Sbjct: 471 NEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEK 530

Query: 69  VFDRISNADTVLWTAIISGHAQH 81
           VF+ +S  +  +WT+IIS ++ H
Sbjct: 531 VFNEMSQKNQFVWTSIISAYSSH 553

[Close]
BLAST of CmoCh04G030060 vs. NCBI nr
Match: gi|778709607|ref|XP_011656423.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRG 60
           MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLEVN++     +ANAYAK G
Sbjct: 363 MCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCG 422

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
           S +DVRKVF+R+ + D + WT++++ ++Q
Sbjct: 423 SLEDVRKVFNRMEDRDLISWTSLVTAYSQ 451

[Close]
BLAST of CmoCh04G030060 vs. NCBI nr
Match: gi|700190613|gb|KGN45817.1| (hypothetical protein Csa_6G013890 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRG 60
           MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLEVN++     +ANAYAK G
Sbjct: 353 MCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCG 412

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
           S +DVRKVF+R+ + D + WT++++ ++Q
Sbjct: 413 SLEDVRKVFNRMEDRDLISWTSLVTAYSQ 441

[Close]
BLAST of CmoCh04G030060 vs. NCBI nr
Match: gi|659113785|ref|XP_008456754.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 7.2e-21
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEVNHI-----MANAYAKRG 60
           MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLEVN +     +ANAYAK G
Sbjct: 363 MCQSDIHLDRYTYCSVFNAIASLKCLLSGKKVHARAIKSGLEVNCVSISNAVANAYAKCG 422

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
           S +DVRKVF+R+ + D + WT++++ ++Q
Sbjct: 423 SLEDVRKVFNRMEDRDLISWTSLVTAYSQ 451

[Close]
BLAST of CmoCh04G030060 vs. NCBI nr
Match: gi|297736528|emb|CBI25399.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIAES-----GKKVHAQAIKSGLE-----VNHIMANAYAKRG 60
           MCQN I  D YTYCSVFNAIA S     G+ VH   +K GL+     VN+ +A+AY+K G
Sbjct: 362 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 421

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQHDIVEGTL 88
             +DVRKVFDR+   D V WT +++ ++Q  + E  L
Sbjct: 422 FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEAL 458

[Close]
BLAST of CmoCh04G030060 vs. NCBI nr
Match: gi|731411993|ref|XP_010658203.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Vitis vinifera])

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1 

Query: 1   MCQNDIHLDHYTYCSVFNAIAES-----GKKVHAQAIKSGLE-----VNHIMANAYAKRG 60
           MCQN I  D YTYCSVFNAIA S     G+ VH   +K GL+     VN+ +A+AY+K G
Sbjct: 362 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 421

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQHDIVEGTL 88
             +DVRKVFDR+   D V WT +++ ++Q  + E  L
Sbjct: 422 FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEAL 458

The following BLAST results are available for this feature:
BLAST of CmoCh04G030060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP252_ARATH5.7e-1037.08Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop... [more]
PP315_ARATH4.8e-0937.50Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN... [more]
PP272_ARATH4.1e-0842.68Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidop... [more]
PP319_ARATH7.0e-0837.65Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN... [more]
PP345_ARATH9.1e-0837.35Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidop... [more]
BLAST of CmoCh04G030060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBQ4_CUCSA1.0e-2160.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013890 PE=4 SV=1[more]
F6HC58_VITVI1.6e-1447.42Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02260 PE=4 SV=... [more]
M5XS64_PRUPE1.0e-1348.31Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014747mg PE=4 S... [more]
V4SCU5_9ROSI1.3e-1348.31Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004388mg PE=4 SV=1[more]
A0A166C0Z4_DAUCA1.7e-1347.19Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011897 PE=4 SV=1[more]
BLAST of CmoCh04G030060 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G24000.13.2e-1137.08 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G16470.12.7e-1037.50 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G49170.12.3e-0942.68 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G18520.13.9e-0937.65 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G32430.15.2e-0937.35 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CmoCh04G030060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778709607|ref|XP_011656423.1|1.5e-2160.67PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucum... [more]
gi|700190613|gb|KGN45817.1|1.5e-2160.67hypothetical protein Csa_6G013890 [Cucumis sativus][more]
gi|659113785|ref|XP_008456754.1|7.2e-2160.67PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis m... [more]
gi|297736528|emb|CBI25399.3|2.2e-1447.42unnamed protein product [Vitis vinifera][more]
gi|731411993|ref|XP_010658203.1|2.2e-1447.42PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Vitis... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G030060.1CmoCh04G030060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..80
score: 5.5
NoneNo IPR availablePANTHERPTHR24015:SF423SUBFAMILY NOT NAMEDcoord: 1..80
score: 5.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G030060Carg05953Silver-seed gourdcarcmoB0033
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G030060Wax gourdcmowgoB0857
CmoCh04G030060Wax gourdcmowgoB0879
CmoCh04G030060Cucurbita moschata (Rifu)cmocmoB261
CmoCh04G030060Cucurbita moschata (Rifu)cmocmoB449
CmoCh04G030060Cucurbita moschata (Rifu)cmocmoB466
CmoCh04G030060Cucumber (Gy14) v1cgycmoB0350
CmoCh04G030060Cucumber (Gy14) v1cgycmoB0903
CmoCh04G030060Cucurbita maxima (Rimu)cmacmoB308
CmoCh04G030060Cucurbita maxima (Rimu)cmacmoB659
CmoCh04G030060Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G030060Cucurbita maxima (Rimu)cmacmoB734
CmoCh04G030060Cucurbita maxima (Rimu)cmacmoB736
CmoCh04G030060Wild cucumber (PI 183967)cmocpiB719
CmoCh04G030060Wild cucumber (PI 183967)cmocpiB768
CmoCh04G030060Cucumber (Chinese Long) v2cmocuB709
CmoCh04G030060Cucumber (Chinese Long) v2cmocuB759
CmoCh04G030060Melon (DHL92) v3.5.1cmomeB668
CmoCh04G030060Melon (DHL92) v3.5.1cmomeB701
CmoCh04G030060Watermelon (Charleston Gray)cmowcgB621
CmoCh04G030060Watermelon (Charleston Gray)cmowcgB650
CmoCh04G030060Watermelon (97103) v1cmowmB714
CmoCh04G030060Watermelon (97103) v1cmowmB731
CmoCh04G030060Cucurbita pepo (Zucchini)cmocpeB654
CmoCh04G030060Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G030060Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G030060Bottle gourd (USVL1VR-Ls)cmolsiB629
CmoCh04G030060Bottle gourd (USVL1VR-Ls)cmolsiB645
CmoCh04G030060Cucumber (Gy14) v2cgybcmoB525
CmoCh04G030060Cucumber (Gy14) v2cgybcmoB816
CmoCh04G030060Melon (DHL92) v3.6.1cmomedB756
CmoCh04G030060Melon (DHL92) v3.6.1cmomedB795
CmoCh04G030060Silver-seed gourdcarcmoB0370
CmoCh04G030060Silver-seed gourdcarcmoB0925
CmoCh04G030060Cucumber (Chinese Long) v3cmocucB0838
CmoCh04G030060Cucumber (Chinese Long) v3cmocucB0899
CmoCh04G030060Watermelon (97103) v2cmowmbB697
CmoCh04G030060Watermelon (97103) v2cmowmbB723