CmoCh04G030060.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G030060.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Pentatricopeptide repeat-containing protein) (3.4.24.-) (3.6.4.3)
Location	Cmo_Chr04 : 21145431 .. 21146017 (-)
Sequence length	264

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAAGTGAATCATATAAGTATCTGAAATGCAGTGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGTAAGGAAGGTTTTTTTTCAGGGTGGAAGAAAGAGGTTTAGTACCTTGGACCACCCTGGTGACTGCTTATTCTCAATGTTTTGAATGGGACAAAGCAATAGAAATCTTCTCAAATATGAGAAGAGAAGGCTTTACACCCAATCAATTCTCATTTTCTAGCATGCTCGTTTCATGTGCCAGCCTTTGCTTACTCGAGTACGTCCACAAGAAGTCCATGGTATCCCCTGCAAGGTTGGCTTGGATATGAATAAAATGCATAGAAAGTGCTCTGATTGACATGTATGCCAAATGCAGCAGTCTGGCCGAGGTGAAAGAAGGTTTTCGATAGAATCTCTAATGCCGATACAGTTTTGTGGACTGCTATAATATCAGGTCATGCTCAACACGATATTGTGGAGGGCACTCTTTGA

mRNA sequence

ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAAGTGAATCATATAATGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGTAAGGAAGGTTTTCGATAGAATCTCTAATGCCGATACAGTTTTGTGGACTGCTATAATATCAGGTCATGCTCAACACGATATTGTGGAGGGCACTCTTTGA

Coding sequence (CDS)

ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAAGTGAATCATATAATGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGTAAGGAAGGTTTTCGATAGAATCTCTAATGCCGATACAGTTTTGTGGACTGCTATAATATCAGGTCATGCTCAACACGATATTGTGGAGGGCACTCTTTGA

Homology

[Close]

BLAST of CmoCh04G030060.1 vs. Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.7e-10
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEV----NHIMANAYAKRGS 60
           M ++     H++Y S+F A +     E GK VHA  IKSG ++     + + + YAK GS
Sbjct: 253 MLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 312

Query: 61  QDDVRKVFDRISNADTVLWTAIISGHAQH 81
             D RK+FDR++  D V W ++++ +AQH
Sbjct: 313 IHDARKIFDRLAKRDVVSWNSLLTAYAQH 341

[Close]

BLAST of CmoCh04G030060.1 vs. Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 4.8e-09
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHA----QAIKSGLEVNHIMANAYAKRGS 60
           M QN I  D YT+ SVF A +     E GK+ HA    + IKS + V+  + + Y K  S
Sbjct: 200 MRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSS 259

Query: 61  QDDVRKVFDRISNADTVLWTAIISGHAQHDIVEGTL 88
             D  +VFD++S  + + WT++ISG+  H  V   L
Sbjct: 260 FSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVL 295

[Close]

BLAST of CmoCh04G030060.1 vs. Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-08
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 9   DHYTYCSVFNAIAES-----GKKVHAQAIKSGL--EVNHIMANAYAK---RGSQDDVRKV 68
           D +T  SVF+A AE      GK++H+ AI+SGL  +V   + + YAK    GS DD RKV
Sbjct: 268 DKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKV 327

Query: 69  FDRISNADTVLWTAIISGHAQH 81
           FDR+ +   + WTA+I+G+ ++
Sbjct: 328 FDRMEDHSVMSWTALITGYMKN 349

[Close]

BLAST of CmoCh04G030060.1 vs. Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.0e-08
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 9   DHYTYCSVFNAIAES-----GKKVHA----QAIKSGLEVNHIMANAYAKRGSQDDVRKVF 68
           + +T CS+  A +E      G++VH+    + IK+ + V   + + YAK G   D RKVF
Sbjct: 283 NEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVF 342

Query: 69  DRISNADTVLWTAIISGHAQHDIVE 85
           D +SN +TV WT+II+ HA+    E
Sbjct: 343 DGMSNRNTVTWTSIIAAHAREGFGE 367

[Close]

BLAST of CmoCh04G030060.1 vs. Swiss-Prot
Match: PP345_ARATH (Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.1e-08
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 9   DHYTYCSVFNAIA-------ESGKKVHAQAIKSGLE----VNHIMANAYAKRGSQDDVRK 68
           + YT+ SV NAIA       + G++ HA  +K GL     V+  + + YAKRG+ D+  K
Sbjct: 471 NEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEK 530

Query: 69  VFDRISNADTVLWTAIISGHAQH 81
           VF+ +S  +  +WT+IIS ++ H
Sbjct: 531 VFNEMSQKNQFVWTSIISAYSSH 553

[Close]

BLAST of CmoCh04G030060.1 vs. TrEMBL
Match: A0A0A0KBQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013890 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRG 60
           MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLEVN++     +ANAYAK G
Sbjct: 353 MCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCG 412

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
           S +DVRKVF+R+ + D + WT++++ ++Q
Sbjct: 413 SLEDVRKVFNRMEDRDLISWTSLVTAYSQ 441

[Close]

BLAST of CmoCh04G030060.1 vs. TrEMBL
Match: F6HC58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02260 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-14
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIAES-----GKKVHAQAIKSGLE-----VNHIMANAYAKRG 60
           MCQN I  D YTYCSVFNAIA S     G+ VH   +K GL+     VN+ +A+AY+K G
Sbjct: 362 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 421

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQHDIVEGTL 88
             +DVRKVFDR+   D V WT +++ ++Q  + E  L
Sbjct: 422 FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEAL 458

[Close]

BLAST of CmoCh04G030060.1 vs. TrEMBL
Match: M5XS64_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014747mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-13
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIAES-----GKKVHAQAIKSGLE-----VNHIMANAYAKRG 60
           MC  +I  D YTYCSVFNAIAE      GK++H   +KSG+E     V++ +A+AYAK G
Sbjct: 286 MCLKNIQPDIYTYCSVFNAIAELKCLQFGKQIHGMVLKSGIEMKVTSVSNAIADAYAKCG 345

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
             +DV+KVFDRI   D V WT +++ ++Q
Sbjct: 346 LLEDVQKVFDRIEERDLVSWTTLVTAYSQ 374

[Close]

BLAST of CmoCh04G030060.1 vs. TrEMBL
Match: V4SCU5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004388mg PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-13
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSG-----LEVNHIMANAYAKRG 60
           MCQ +I  D YTYCS+FNAIA     + GK VH   +KSG     + V + +A+AYAK G
Sbjct: 363 MCQKNIKADVYTYCSLFNAIAALKYLQLGKAVHGIVLKSGSDVLVVSVYNAIADAYAKCG 422

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
           + +DVRKVFDR+   D V WT +++ H+Q
Sbjct: 423 ALEDVRKVFDRMGERDMVSWTTLVTAHSQ 451

[Close]

BLAST of CmoCh04G030060.1 vs. TrEMBL
Match: A0A166C0Z4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011897 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-13
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIAES-----GKKVHAQAIKSG-----LEVNHIMANAYAKRG 60
           MCQN+I  D YTYCSVFN I++      GK+VH   +KSG     L V + +A+AY+K G
Sbjct: 374 MCQNNIKSDIYTYCSVFNTISDLRYLWFGKQVHGLIVKSGCHVTVLSVINAIADAYSKCG 433

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
           S +DVRK+FDR+ + D V WT +++ ++Q
Sbjct: 434 SIEDVRKIFDRMEDRDIVSWTTLVNAYSQ 462

[Close]

BLAST of CmoCh04G030060.1 vs. TAIR10
Match: AT3G24000.1 (AT3G24000.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-11
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEV----NHIMANAYAKRGS 60
           M ++     H++Y S+F A +     E GK VHA  IKSG ++     + + + YAK GS
Sbjct: 253 MLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 312

Query: 61  QDDVRKVFDRISNADTVLWTAIISGHAQH 81
             D RK+FDR++  D V W ++++ +AQH
Sbjct: 313 IHDARKIFDRLAKRDVVSWNSLLTAYAQH 341

[Close]

BLAST of CmoCh04G030060.1 vs. TAIR10
Match: AT4G16470.1 (AT4G16470.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-10
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHA----QAIKSGLEVNHIMANAYAKRGS 60
           M QN I  D YT+ SVF A +     E GK+ HA    + IKS + V+  + + Y K  S
Sbjct: 200 MRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSS 259

Query: 61  QDDVRKVFDRISNADTVLWTAIISGHAQHDIVEGTL 88
             D  +VFD++S  + + WT++ISG+  H  V   L
Sbjct: 260 FSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVL 295

[Close]

BLAST of CmoCh04G030060.1 vs. TAIR10
Match: AT3G49170.1 (AT3G49170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-09
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 9   DHYTYCSVFNAIAES-----GKKVHAQAIKSGL--EVNHIMANAYAK---RGSQDDVRKV 68
           D +T  SVF+A AE      GK++H+ AI+SGL  +V   + + YAK    GS DD RKV
Sbjct: 268 DKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKV 327

Query: 69  FDRISNADTVLWTAIISGHAQH 81
           FDR+ +   + WTA+I+G+ ++
Sbjct: 328 FDRMEDHSVMSWTALITGYMKN 349

[Close]

BLAST of CmoCh04G030060.1 vs. TAIR10
Match: AT4G18520.1 (AT4G18520.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-09
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 9   DHYTYCSVFNAIAES-----GKKVHA----QAIKSGLEVNHIMANAYAKRGSQDDVRKVF 68
           + +T CS+  A +E      G++VH+    + IK+ + V   + + YAK G   D RKVF
Sbjct: 283 NEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVF 342

Query: 69  DRISNADTVLWTAIISGHAQHDIVE 85
           D +SN +TV WT+II+ HA+    E
Sbjct: 343 DGMSNRNTVTWTSIIAAHAREGFGE 367

[Close]

BLAST of CmoCh04G030060.1 vs. TAIR10
Match: AT4G32430.1 (AT4G32430.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 5.2e-09
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 9   DHYTYCSVFNAIA-------ESGKKVHAQAIKSGLE----VNHIMANAYAKRGSQDDVRK 68
           + YT+ SV NAIA       + G++ HA  +K GL     V+  + + YAKRG+ D+  K
Sbjct: 471 NEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEK 530

Query: 69  VFDRISNADTVLWTAIISGHAQH 81
           VF+ +S  +  +WT+IIS ++ H
Sbjct: 531 VFNEMSQKNQFVWTSIISAYSSH 553

[Close]

BLAST of CmoCh04G030060.1 vs. NCBI nr
Match: gi|778709607|ref|XP_011656423.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRG 60
           MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLEVN++     +ANAYAK G
Sbjct: 363 MCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCG 422

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
           S +DVRKVF+R+ + D + WT++++ ++Q
Sbjct: 423 SLEDVRKVFNRMEDRDLISWTSLVTAYSQ 451

[Close]

BLAST of CmoCh04G030060.1 vs. NCBI nr
Match: gi|700190613|gb|KGN45817.1| (hypothetical protein Csa_6G013890 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRG 60
           MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLEVN++     +ANAYAK G
Sbjct: 353 MCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCG 412

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
           S +DVRKVF+R+ + D + WT++++ ++Q
Sbjct: 413 SLEDVRKVFNRMEDRDLISWTSLVTAYSQ 441

[Close]

BLAST of CmoCh04G030060.1 vs. NCBI nr
Match: gi|659113785|ref|XP_008456754.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 7.2e-21
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEVNHI-----MANAYAKRG 60
           MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLEVN +     +ANAYAK G
Sbjct: 363 MCQSDIHLDRYTYCSVFNAIASLKCLLSGKKVHARAIKSGLEVNCVSISNAVANAYAKCG 422

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQ 80
           S +DVRKVF+R+ + D + WT++++ ++Q
Sbjct: 423 SLEDVRKVFNRMEDRDLISWTSLVTAYSQ 451

[Close]

BLAST of CmoCh04G030060.1 vs. NCBI nr
Match: gi|297736528|emb|CBI25399.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIAES-----GKKVHAQAIKSGLE-----VNHIMANAYAKRG 60
           MCQN I  D YTYCSVFNAIA S     G+ VH   +K GL+     VN+ +A+AY+K G
Sbjct: 362 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 421

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQHDIVEGTL 88
             +DVRKVFDR+   D V WT +++ ++Q  + E  L
Sbjct: 422 FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEAL 458

[Close]

BLAST of CmoCh04G030060.1 vs. NCBI nr
Match: gi|731411993|ref|XP_010658203.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Vitis vinifera])

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1


Query: 1   MCQNDIHLDHYTYCSVFNAIAES-----GKKVHAQAIKSGLE-----VNHIMANAYAKRG 60
           MCQN I  D YTYCSVFNAIA S     G+ VH   +K GL+     VN+ +A+AY+K G
Sbjct: 362 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 421

Query: 61  SQDDVRKVFDRISNADTVLWTAIISGHAQHDIVEGTL 88
             +DVRKVFDR+   D V WT +++ ++Q  + E  L
Sbjct: 422 FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEAL 458

The following BLAST results are available for this feature:

BLAST of CmoCh04G030060.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP252_ARATH	5.7e-10	37.08	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]
PP315_ARATH	4.8e-09	37.50	Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN...	[more]
PP272_ARATH	4.1e-08	42.68	Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidop...	[more]
PP319_ARATH	7.0e-08	37.65	Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN...	[more]
PP345_ARATH	9.1e-08	37.35	Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidop...	[more]

BLAST of CmoCh04G030060.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBQ4_CUCSA	1.0e-21	60.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013890 PE=4 SV=1	[more]
F6HC58_VITVI	1.6e-14	47.42	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02260 PE=4 SV=...	[more]
M5XS64_PRUPE	1.0e-13	48.31	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014747mg PE=4 S...	[more]
V4SCU5_9ROSI	1.3e-13	48.31	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004388mg PE=4 SV=1	[more]
A0A166C0Z4_DAUCA	1.7e-13	47.19	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011897 PE=4 SV=1	[more]

BLAST of CmoCh04G030060.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24000.1	3.2e-11	37.08	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G16470.1	2.7e-10	37.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G49170.1	2.3e-09	42.68	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18520.1	3.9e-09	37.65	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G32430.1	5.2e-09	37.35	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CmoCh04G030060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778709607\|ref\|XP_011656423.1\|	1.5e-21	60.67	PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucum...	[more]
gi\|700190613\|gb\|KGN45817.1\|	1.5e-21	60.67	hypothetical protein Csa_6G013890 [Cucumis sativus]	[more]
gi\|659113785\|ref\|XP_008456754.1\|	7.2e-21	60.67	PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis m...	[more]
gi\|297736528\|emb\|CBI25399.3\|	2.2e-14	47.42	unnamed protein product [Vitis vinifera]	[more]
gi\|731411993\|ref\|XP_010658203.1\|	2.2e-14	47.42	PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Vitis...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G030060	CmoCh04G030060	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G030060.1	CmoCh04G030060.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G030060.1.CDS.3	CmoCh04G030060.1.CDS.3	CDS
CmoCh04G030060.1.CDS.2	CmoCh04G030060.1.CDS.2	CDS
CmoCh04G030060.1.CDS.1	CmoCh04G030060.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G030060.1.exon.3	CmoCh04G030060.1.exon.3	exon
CmoCh04G030060.1.exon.2	CmoCh04G030060.1.exon.2	exon
CmoCh04G030060.1.exon.1	CmoCh04G030060.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..80 score: 5.5
None	No IPR available	PANTHER	PTHR24015:SF423	SUBFAMILY NOT NAMED	coord: 1..80 score: 5.5