Carg05953 (gene) Silver-seed gourd

Overview
NameCarg05953
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_026 : 417962 .. 418385 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAAGTGAATCATATAAGTATCTGAAATGCAGTGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGTAAGGAAGGTTTTTTTTCAGGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGGTGACTGCTTATTCTCAATGTTTTGAATGGGACAAAGCAATAGAAATCTTCTCAAATATGAGAAGAGAAGGCTTTACACCCAATCAATTCTCATTTTCTAGCATGCTCGTTTCATGTGCCAGCCTTTGCTTACTCGAGTACGTCCACAAGAAGTCCATGGTATCCCCTGCAAGGTTGGCTTGGATATGA

mRNA sequence

ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAATGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGGTGACTGCTTATTCTCAATGTTTTGAATGGGACAAAGCAATAGAAATCTTCTCAAATATGAGAAGAGAAGGCTTTACACCCAATCAATTCTCATTTTCTAGCATGCTCGTTTCATGTGCCAGCCTTTGCTTACTCGAGTACGTCCACAAGAAGTCCATGGTATCCCCTGCAAGGTTGGCTTGGATATGA

Coding sequence (CDS)

ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAATGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGGTGACTGCTTATTCTCAATGTTTTGAATGGGACAAAGCAATAGAAATCTTCTCAAATATGAGAAGAGAAGGCTTTACACCCAATCAATTCTCATTTTCTAGCATGCTCGTTTCATGTGCCAGCCTTTGCTTACTCGAGTACGTCCACAAGAAGTCCATGGTATCCCCTGCAAGGTTGGCTTGGATATGA

Protein sequence

MCQNDIHLDHYTYCSVFNAIAESGKKVHAQAIKSGLEWLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASLCLLEYVHKKSMVSPARLAWI
Homology
[Close]
BLAST of Carg05953 vs. NCBI nr
Match: XP_016901974.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 84/132 (63.64%), Postives = 94/132 (71.21%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------ 60
           MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                  
Sbjct: 363 MCQSDIHLDRYTYCSVFNAIASLKCLLSGKKVHARAIKSGLEVNCVSISNAVANAYAKCG 422

Query: 61  WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
            L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIEIFSNMR EG+ PNQF+FSS+
Sbjct: 423 SLEDVRKVFNRM--EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGYAPNQFAFSSV 482

[Close]
BLAST of Carg05953 vs. NCBI nr
Match: KGN45817.1 (hypothetical protein Csa_6G013890 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 3.2e-34
Identity = 84/132 (63.64%), Postives = 93/132 (70.45%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLE------------------ 60
           MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLE                  
Sbjct: 353 MCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCG 412

Query: 61  WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
            L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIEIFSNMR EG  PNQF+FSS+
Sbjct: 413 SLEDVRKVFNRM--EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSV 472

[Close]
BLAST of Carg05953 vs. NCBI nr
Match: XP_011656423.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 3.2e-34
Identity = 84/132 (63.64%), Postives = 93/132 (70.45%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLE------------------ 60
           MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLE                  
Sbjct: 363 MCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCG 422

Query: 61  WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
            L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIEIFSNMR EG  PNQF+FSS+
Sbjct: 423 SLEDVRKVFNRM--EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSV 482

[Close]
BLAST of Carg05953 vs. NCBI nr
Match: XP_022993736.1 (pentatricopeptide repeat-containing protein At2g27610-like [Cucurbita maxima])

HSP 1 Score: 154.1 bits (388), Expect = 3.2e-34
Identity = 82/132 (62.12%), Postives = 93/132 (70.45%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRM------ 60
           MC N++HLD YTYCSVFNAIA       GKKVHA+AIKSGLE  +  +++   +      
Sbjct: 363 MCLNNVHLDRYTYCSVFNAIAALKCLSLGKKVHARAIKSGLE--VNNISISNAVANAYAK 422

Query: 61  ------------MVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
                        +EERDLV WTTLVTAYSQC EWDKAIEIFSNMR EGF PNQF+FSS+
Sbjct: 423 CGSLEDLRKVFYSMEERDLVSWTTLVTAYSQCSEWDKAIEIFSNMREEGFAPNQFAFSSV 482

[Close]
BLAST of Carg05953 vs. NCBI nr
Match: XP_023549692.1 (pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.1 bits (388), Expect = 3.2e-34
Identity = 82/132 (62.12%), Postives = 93/132 (70.45%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRM------ 60
           MC N++HLD YTYCSVFNAIA       GKKVHA+AIKSGLE  +  +++   +      
Sbjct: 363 MCLNNVHLDRYTYCSVFNAIAALKCLSLGKKVHARAIKSGLE--VNNISISNAVANAYAK 422

Query: 61  ------------MVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
                        +EERDLV WTTLVTAYSQC EWDKAIEIFSNMR EGF PNQF+FSS+
Sbjct: 423 CGSLEDLRKVFYSMEERDLVSWTTLVTAYSQCSEWDKAIEIFSNMREEGFAPNQFAFSSV 482

[Close]
BLAST of Carg05953 vs. TAIR10
Match: AT4G39530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-09
Identity = 36/129 (27.91%), Postives = 68/129 (52.71%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE--- 60
           + ++++  D Y   +V +A +     E GK++HA  ++ GLE    ++NV     V+   
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299

Query: 61  ------------ERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVS 110
                        ++++ WTTL++ Y Q     +A+E+F++M + G  P+ ++ SS+L S
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359

[Close]
BLAST of Carg05953 vs. TAIR10
Match: AT3G02330.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 9.6e-09
Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFN-----AIAESGKKVHAQAIKSGLE-------WLMRMLNV--- 60
           M +  I  D +TY +V +     A A  GK++HAQ IK  L+        L+ M +    
Sbjct: 594 MMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGD 653

Query: 61  --DRRMMVEE---RDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVS 109
             D R+M E+   RD V W  ++  Y+   + ++AI++F  M  E   PN  +F S+L +
Sbjct: 654 LHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRA 713

[Close]
BLAST of Carg05953 vs. TAIR10
Match: AT3G47840.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-08
Identity = 38/119 (31.93%), Postives = 53/119 (44.54%), Query Frame = 0 

Query: 9   DHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE----------- 68
           D YT+     A A     + GK +H   I  G    + + N    M  E           
Sbjct: 208 DTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLF 267

Query: 69  ----ERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASLCLL 108
               ERD+V WT+L+ AY +  +  KA+E F  MR     PN+ +F+SM  +CASL  L
Sbjct: 268 ENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRL 326

[Close]
BLAST of Carg05953 vs. TAIR10
Match: AT3G61170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-08
Identity = 33/97 (34.02%), Postives = 53/97 (54.64%), Query Frame = 0 

Query: 24  GKKVHAQAIKSGLEWLMRMLNVDRRM----------------MVEERDLVPWTTLVTAYS 83
           G+++H   IK+G +  + ++N    M                M  E++ V WT+++T YS
Sbjct: 144 GEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYS 203

Query: 84  QCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASL 105
           Q     KAIE F ++RREG   NQ++F S+L +CAS+
Sbjct: 204 QNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASV 240

[Close]
BLAST of Carg05953 vs. TAIR10
Match: AT3G49740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-08
Identity = 35/116 (30.17%), Postives = 56/116 (48.28%), Query Frame = 0 

Query: 12  TYCSVFN--AIAESGKKVHAQAIKSGLEWLMRMLNVDRRM---------------MVEER 71
           T+ SV    + A  G +VH  AIK+G E    + N    M                +EE+
Sbjct: 293 TFVSVMGSCSCAAMGHQVHGLAIKTGYEKYTLVSNATMTMYSSFEDFGAAHKVFESLEEK 352

Query: 72  DLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASLCLLEYV 111
           DLV W T++++Y+Q      A+ ++  M   G  P++F+F S+L +   L +LE V
Sbjct: 353 DLVTWNTMISSYNQAKLGKSAMSVYKRMHIIGVKPDEFTFGSLLATSLDLDVLEMV 408

[Close]
BLAST of Carg05953 vs. Swiss-Prot
Match: sp|Q9SVA5|PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E52 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.9e-08
Identity = 36/129 (27.91%), Postives = 68/129 (52.71%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE--- 60
           + ++++  D Y   +V +A +     E GK++HA  ++ GLE    ++NV     V+   
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299

Query: 61  ------------ERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVS 110
                        ++++ WTTL++ Y Q     +A+E+F++M + G  P+ ++ SS+L S
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359

[Close]
BLAST of Carg05953 vs. Swiss-Prot
Match: sp|Q9FWA6|PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E90 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-07
Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFN-----AIAESGKKVHAQAIKSGLE-------WLMRMLNV--- 60
           M +  I  D +TY +V +     A A  GK++HAQ IK  L+        L+ M +    
Sbjct: 594 MMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGD 653

Query: 61  --DRRMMVEE---RDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVS 109
             D R+M E+   RD V W  ++  Y+   + ++AI++F  M  E   PN  +F S+L +
Sbjct: 654 LHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRA 713

[Close]
BLAST of Carg05953 vs. Swiss-Prot
Match: sp|Q9STS9|PP268_ARATH (Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E43 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-07
Identity = 38/119 (31.93%), Postives = 53/119 (44.54%), Query Frame = 0 

Query: 9   DHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE----------- 68
           D YT+     A A     + GK +H   I  G    + + N    M  E           
Sbjct: 208 DTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLF 267

Query: 69  ----ERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASLCLL 108
               ERD+V WT+L+ AY +  +  KA+E F  MR     PN+ +F+SM  +CASL  L
Sbjct: 268 ENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRL 326

[Close]
BLAST of Carg05953 vs. Swiss-Prot
Match: sp|Q9M2Y4|PP276_ARATH (Pentatricopeptide repeat-containing protein At3g49740 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E84 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.6e-07
Identity = 35/116 (30.17%), Postives = 56/116 (48.28%), Query Frame = 0 

Query: 12  TYCSVFN--AIAESGKKVHAQAIKSGLEWLMRMLNVDRRM---------------MVEER 71
           T+ SV    + A  G +VH  AIK+G E    + N    M                +EE+
Sbjct: 293 TFVSVMGSCSCAAMGHQVHGLAIKTGYEKYTLVSNATMTMYSSFEDFGAAHKVFESLEEK 352

Query: 72  DLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASLCLLEYV 111
           DLV W T++++Y+Q      A+ ++  M   G  P++F+F S+L +   L +LE V
Sbjct: 353 DLVTWNTMISSYNQAKLGKSAMSVYKRMHIIGVKPDEFTFGSLLATSLDLDVLEMV 408

[Close]
BLAST of Carg05953 vs. Swiss-Prot
Match: sp|Q9LSL8|PP446_ARATH (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H47 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-06
Identity = 41/128 (32.03%), Postives = 65/128 (50.78%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE--------WLMRM----- 60
           M  N++  D YT  SVF A ++       ++ H  A+  GLE         L+ M     
Sbjct: 156 MITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFG 215

Query: 61  ------LNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSS 105
                 L +DR   VEE+D+V  T L+  YSQ  E  +A++ F +M  E   PN+++++S
Sbjct: 216 KTREAKLVLDR---VEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYAS 275

[Close]
BLAST of Carg05953 vs. TrEMBL
Match: tr|A0A1S4E171|A0A1S4E171_CUCME (pentatricopeptide repeat-containing protein At2g27610-like OS=Cucumis melo OX=3656 GN=LOC103496600 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34
Identity = 84/132 (63.64%), Postives = 94/132 (71.21%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------ 60
           MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                  
Sbjct: 363 MCQSDIHLDRYTYCSVFNAIASLKCLLSGKKVHARAIKSGLEVNCVSISNAVANAYAKCG 422

Query: 61  WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
            L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIEIFSNMR EG+ PNQF+FSS+
Sbjct: 423 SLEDVRKVFNRM--EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGYAPNQFAFSSV 482

[Close]
BLAST of Carg05953 vs. TrEMBL
Match: tr|A0A0A0KBQ4|A0A0A0KBQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013890 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 84/132 (63.64%), Postives = 93/132 (70.45%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLE------------------ 60
           MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLE                  
Sbjct: 353 MCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCG 412

Query: 61  WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
            L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIEIFSNMR EG  PNQF+FSS+
Sbjct: 413 SLEDVRKVFNRM--EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSV 472

[Close]
BLAST of Carg05953 vs. TrEMBL
Match: tr|A0A2P4H490|A0A2P4H490_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_58366 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.3e-28
Identity = 72/135 (53.33%), Postives = 89/135 (65.93%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIAES-----GKKVHAQAIKSGLEWLMRMLNVDRRM------ 60
           MC+NDI  D YTYCSVFNAIA S     GK+VH   +KSGL   M++++V   +      
Sbjct: 356 MCRNDIKSDVYTYCSVFNAIATSKLLRFGKEVHCMVLKSGLN--MKVVSVSNAIADTYAK 415

Query: 61  ------------MVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 113
                        +EERD+V WTTLVTAYSQC EW++A+ IFS MR EGF PNQF+FSS+
Sbjct: 416 CGLLEDVRKVFDRMEERDIVSWTTLVTAYSQCSEWEEALAIFSQMREEGFIPNQFTFSSV 475

[Close]
BLAST of Carg05953 vs. TrEMBL
Match: tr|A0A2I4FUM6|A0A2I4FUM6_9ROSI (putative pentatricopeptide repeat-containing protein At1g56570 OS=Juglans regia OX=51240 GN=LOC109002176 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.9e-28
Identity = 72/133 (54.14%), Postives = 88/133 (66.17%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLM--------------R 60
           MCQNDI  D YTYCSVF+AIA     + GK+VH   +KSGL   +               
Sbjct: 360 MCQNDIKSDVYTYCSVFDAIAALKFVQFGKEVHGMVLKSGLNLKVTSVSNAIADAYAKFS 419

Query: 61  MLNVDRRMM--VEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLV 113
           +L   R++   +EERD+V WTTLVT YSQC EW++A+ IFS MR EGF PNQFSFSS+LV
Sbjct: 420 LLEDARKVFDRMEERDMVSWTTLVTTYSQCSEWEEALAIFSRMRDEGFIPNQFSFSSVLV 479

[Close]
BLAST of Carg05953 vs. TrEMBL
Match: tr|A0A251QLP4|A0A251QLP4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G259700 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 69/132 (52.27%), Postives = 85/132 (64.39%), Query Frame = 0 

Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEWLMRMLNVDRRM------ 60
           MC  +I  D YTYCSVFNAIAE      GK++H   +KSG+E  M++ +V   +      
Sbjct: 388 MCLKNIQPDIYTYCSVFNAIAELKCLQFGKQIHGMVLKSGIE--MKVTSVSNAIADAYAK 447

Query: 61  ------------MVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
                        +EERDLV WTTLVTAYSQ  EW+ A+ IFS +R EGF PNQF+FSS+
Sbjct: 448 CGLLEDVQKVFDRIEERDLVSWTTLVTAYSQGSEWEDALTIFSKLREEGFMPNQFTFSSV 507

The following BLAST results are available for this feature:
BLAST of Carg05953 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901974.11.9e-3463.64PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis m... [more]
KGN45817.13.2e-3463.64hypothetical protein Csa_6G013890 [Cucumis sativus][more]
XP_011656423.13.2e-3463.64PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Cucum... [more]
XP_022993736.13.2e-3462.12pentatricopeptide repeat-containing protein At2g27610-like [Cucurbita maxima][more]
XP_023549692.13.2e-3462.12pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita pepo subsp... [more]
BLAST of Carg05953 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39530.13.3e-0927.91Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G02330.19.6e-0931.25Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G47840.11.6e-0831.93Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G61170.12.1e-0834.02Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G49740.14.8e-0830.17Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Carg05953 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SVA5|PP357_ARATH5.9e-0827.91Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX... [more]
sp|Q9FWA6|PP207_ARATH1.7e-0731.25Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidop... [more]
sp|Q9STS9|PP268_ARATH2.9e-0731.93Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis th... [more]
sp|Q9M2Y4|PP276_ARATH8.6e-0730.17Pentatricopeptide repeat-containing protein At3g49740 OS=Arabidopsis thaliana OX... [more]
sp|Q9LSL8|PP446_ARATH1.1e-0632.03Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg05953 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E171|A0A1S4E171_CUCME1.2e-3463.64pentatricopeptide repeat-containing protein At2g27610-like OS=Cucumis melo OX=36... [more]
tr|A0A0A0KBQ4|A0A0A0KBQ4_CUCSA2.1e-3463.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013890 PE=4 SV=1[more]
tr|A0A2P4H490|A0A2P4H490_QUESU2.3e-2853.33Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_5... [more]
tr|A0A2I4FUM6|A0A2I4FUM6_9ROSI2.9e-2854.14putative pentatricopeptide repeat-containing protein At1g56570 OS=Juglans regia ... [more]
tr|A0A251QLP4|A0A251QLP4_PRUPE2.8e-2652.27Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G259700 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05953-RACarg05953-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 1..112
e-value: 2.5E-17
score: 65.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 59..90
e-value: 3.4E-7
score: 28.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 55..102
e-value: 6.9E-10
score: 38.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 55..89
score: 11.838
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..42
score: 5.042
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 10..110
NoneNo IPR availablePANTHERPTHR24015:SF661SUBFAMILY NOT NAMEDcoord: 10..110

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05953CmaCh04G028790Cucurbita maxima (Rimu)carcmaB0033
Carg05953CmoCh04G030060Cucurbita moschata (Rifu)carcmoB0033
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg05953Silver-seed gourdcarcarB020
Carg05953Silver-seed gourdcarcarB024
Carg05953Silver-seed gourdcarcarB025
Carg05953Cucumber (Gy14) v2carcgybB0019
Carg05953Cucumber (Gy14) v2carcgybB0023
Carg05953Cucumber (Gy14) v1carcgyB0018
Carg05953Cucumber (Gy14) v1carcgyB0026
Carg05953Cucurbita maxima (Rimu)carcmaB0030
Carg05953Cucurbita maxima (Rimu)carcmaB0032
Carg05953Cucurbita moschata (Rifu)carcmoB0031
Carg05953Cucurbita moschata (Rifu)carcmoB0032
Carg05953Cucurbita pepo (Zucchini)carcpeB0030
Carg05953Cucurbita pepo (Zucchini)carcpeB0031
Carg05953Cucurbita pepo (Zucchini)carcpeB0034
Carg05953Wild cucumber (PI 183967)carcpiB0020
Carg05953Wild cucumber (PI 183967)carcpiB0024
Carg05953Cucumber (Chinese Long) v2carcuB0020
Carg05953Cucumber (Chinese Long) v2carcuB0023
Carg05953Cucumber (Chinese Long) v3carcucB0020
Carg05953Cucumber (Chinese Long) v3carcucB0024
Carg05953Bottle gourd (USVL1VR-Ls)carlsiB015
Carg05953Bottle gourd (USVL1VR-Ls)carlsiB017
Carg05953Melon (DHL92) v3.5.1carmeB0021
Carg05953Melon (DHL92) v3.5.1carmeB0025
Carg05953Melon (DHL92) v3.6.1carmedB0022
Carg05953Melon (DHL92) v3.6.1carmedB0026
Carg05953Watermelon (Charleston Gray)carwcgB0019
Carg05953Watermelon (Charleston Gray)carwcgB0026
Carg05953Watermelon (97103) v1carwmB0019
Carg05953Watermelon (97103) v1carwmB0024
Carg05953Watermelon (97103) v2carwmbB0015
Carg05953Watermelon (97103) v2carwmbB0021
Carg05953Wax gourdcarwgoB0025
Carg05953Wax gourdcarwgoB0022