CmoCh04G028530 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G028530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA ligase/cyclic nucleotide phosphodiesterase family protein
Location	Cmo_Chr04 : 20349402 .. 20349953 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACAAGGTTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCCAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTCTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCCTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTCGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA

mRNA sequence

ATGTCACAAGGTTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCCAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTCTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCCTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTCGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA

Coding sequence (CDS)

ATGTCACAAGGTTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCCAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTCTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCCTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTCGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA

Homology

[Close]

BLAST of CmoCh04G028530 vs. TrEMBL
Match: A0A0A0KVB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630940 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.4e-94
Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQFQSQLCEAMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of CmoCh04G028530 vs. TrEMBL
Match: M5X3Z2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012091mg PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-85
Identity = 154/183 (84.15%), Postives = 173/183 (94.54%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP K+E++
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +K FASKQEPL LS +SIGSLP+DNN+LFL P PS+SLLQFQSQLCEA+++EG+E GEEY
Sbjct: 61  IKAFASKQEPLALSFSSIGSLPHDNNVLFLSPTPSVSLLQFQSQLCEAVKREGVEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SW+P+CAVAQEVPK RMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RTDSWVPYCAVAQEVPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of CmoCh04G028530 vs. TrEMBL
Match: B9RUD3_RICCO (Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0851860 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 6.7e-84
Identity = 154/182 (84.62%), Postives = 171/182 (93.96%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITL+SS F+EPTK+ESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLYSSSFVEPTKLESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VK FASKQEPLPLSL++IG LPNDNN+LFL P PS+SLLQFQSQLC+A++KEGIE  EEY
Sbjct: 61  VKTFASKQEPLPLSLSAIGGLPNDNNVLFLAPTPSLSLLQFQSQLCDALKKEGIEISEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           +  SWIP+CAVAQ+VP+AR+ EAFCVLRDLKLPVSGYA+DIGLVEFSPVRELFSFVLGN 
Sbjct: 121 KPDSWIPYCAVAQDVPRARIGEAFCVLRDLKLPVSGYAMDIGLVEFSPVRELFSFVLGNC 180

Query: 181 LE 183
           +E
Sbjct: 181 VE 182

[Close]

BLAST of CmoCh04G028530 vs. TrEMBL
Match: D7TWT6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01700 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.8e-82
Identity = 151/183 (82.51%), Postives = 167/183 (91.26%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSP +EP ++E+I
Sbjct: 75  MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 134

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +K+FA KQEPLPLS +SIGSLPND N+LFL P P++SLLQF SQLC+A++KEGIE GEEY
Sbjct: 135 IKSFAGKQEPLPLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 194

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SWIPHC VAQEVPK RM EAF VLRDLKLPV+GYA+DIGLVEFSPVRELFSFVL NT
Sbjct: 195 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 254

Query: 181 LEA 184
           LEA
Sbjct: 255 LEA 257

[Close]

BLAST of CmoCh04G028530 vs. TrEMBL
Match: A0A0D2SR81_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G028500 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.4e-81
Identity = 146/182 (80.22%), Postives = 171/182 (93.96%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGF+IELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFL+P K+ES+
Sbjct: 1   MSQGFSIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLDPAKLESV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +K+FASKQEPLPLS +SIG+ PN+NN+LFL PAP++SLLQFQ+Q+CEA++KEGIE GEE+
Sbjct: 61  IKSFASKQEPLPLSFSSIGAFPNENNVLFLSPAPTMSLLQFQAQVCEAIKKEGIEIGEEF 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           +  +WIP+C VAQEVPK RMAEAFCVLR+LKLPVSGYA+DIGLVEFSPVRE FSF LGN+
Sbjct: 121 KADAWIPYCPVAQEVPKTRMAEAFCVLRELKLPVSGYAMDIGLVEFSPVREHFSFGLGNS 180

Query: 181 LE 183
           ++
Sbjct: 181 ID 182

[Close]

BLAST of CmoCh04G028530 vs. TAIR10
Match: AT5G40190.1 (AT5G40190.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein)

HSP 1 Score: 276.9 bits (707), Expect = 8.7e-75
Identity = 128/183 (69.95%), Postives = 159/183 (86.89%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MS+G+AIELYFDPALENQVLKAWNV ARRQIST+LI  ESRPHITLFS+ F + T++ES+
Sbjct: 1   MSEGYAIELYFDPALENQVLKAWNVFARRQISTKLINTESRPHITLFSTSFFDSTRLESV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +KNF SKQEP+ +S ++IGS  +DNN+LFL P PS+SLLQ Q+QLC+ ++KE ++ GEEY
Sbjct: 61  IKNFVSKQEPISISFSTIGSFSSDNNVLFLSPTPSLSLLQLQTQLCDMLKKESVDIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R+ SW+P C VA +VPK+RMAEAF VLRDLKLPV+GY ++IGLVEFSPVRE+FSF LGNT
Sbjct: 121 RVDSWVPFCPVALDVPKSRMAEAFSVLRDLKLPVNGYGMEIGLVEFSPVREVFSFPLGNT 180

Query: 181 LEA 184
           LE+
Sbjct: 181 LES 183

[Close]

BLAST of CmoCh04G028530 vs. TAIR10
Match: AT3G28140.1 (AT3G28140.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein)

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-69
Identity = 128/184 (69.57%), Postives = 154/184 (83.70%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF-LEPTKVES 60
           MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS+   ++ TK+E 
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVFARRQISTYLINNESRPHITLFSTTSSIDSTKLEP 60

Query: 61  IVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEE 120
           I+K+F+SKQEP+ LS +SIGS  +D+N LFL P PS+SL+Q Q QLCE ++KEG E GEE
Sbjct: 61  IIKSFSSKQEPISLSFSSIGSFSSDDNALFLSPTPSLSLIQLQLQLCEVIKKEGFEIGEE 120

Query: 121 YRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN 180
           YR+ SW+P C+VA +VPK+R++E F VLRDLKL V GYA+DIGLVEFSPVRE+FSF LGN
Sbjct: 121 YRVDSWVPFCSVAVDVPKSRISEGFLVLRDLKLLVYGYAMDIGLVEFSPVREVFSFGLGN 180

Query: 181 TLEA 184
            LE+
Sbjct: 181 NLES 184

[Close]

BLAST of CmoCh04G028530 vs. NCBI nr
Match: gi|449449194|ref|XP_004142350.1| (PREDICTED: uncharacterized protein LOC101208638 [Cucumis sativus])

HSP 1 Score: 353.6 bits (906), Expect = 2.1e-94
Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQFQSQLCEAMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of CmoCh04G028530 vs. NCBI nr
Match: gi|658012435|ref|XP_008341484.1| (PREDICTED: uncharacterized protein LOC103404361 [Malus domestica])

HSP 1 Score: 324.3 bits (830), Expect = 1.3e-85
Identity = 154/183 (84.15%), Postives = 172/183 (93.99%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MS+G+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP K+E++
Sbjct: 3   MSEGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 62

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           ++ FASKQEPL LS +SIGSLPNDNN+LFL P PS+SLLQFQSQLCEAM+KEG+E GEEY
Sbjct: 63  IRTFASKQEPLALSFSSIGSLPNDNNVLFLSPTPSVSLLQFQSQLCEAMKKEGVEIGEEY 122

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R   W+P+CAVAQEVPK RMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGNT
Sbjct: 123 RTDCWVPYCAVAQEVPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 182

Query: 181 LEA 184
           +EA
Sbjct: 183 VEA 185

[Close]

BLAST of CmoCh04G028530 vs. NCBI nr
Match: gi|595926694|ref|XP_007215044.1| (hypothetical protein PRUPE_ppa012091mg [Prunus persica])

HSP 1 Score: 323.2 bits (827), Expect = 3.0e-85
Identity = 154/183 (84.15%), Postives = 173/183 (94.54%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP K+E++
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +K FASKQEPL LS +SIGSLP+DNN+LFL P PS+SLLQFQSQLCEA+++EG+E GEEY
Sbjct: 61  IKAFASKQEPLALSFSSIGSLPHDNNVLFLSPTPSVSLLQFQSQLCEAVKREGVEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SW+P+CAVAQEVPK RMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RTDSWVPYCAVAQEVPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of CmoCh04G028530 vs. NCBI nr
Match: gi|694442756|ref|XP_009348029.1| (PREDICTED: uncharacterized protein LOC103939647 [Pyrus x bretschneideri])

HSP 1 Score: 322.8 bits (826), Expect = 3.9e-85
Identity = 153/183 (83.61%), Postives = 171/183 (93.44%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MS+G+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP K+E++
Sbjct: 1   MSEGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           ++ FASKQEPL LS +SIGSLPNDNN+LFL P PS+SLLQFQSQLCEAM+KEG+E GEEY
Sbjct: 61  IRTFASKQEPLALSFSSIGSLPNDNNVLFLSPTPSVSLLQFQSQLCEAMKKEGVEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R   W+P+CAVAQE PK RMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RTDCWVPYCAVAQEAPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of CmoCh04G028530 vs. NCBI nr
Match: gi|1009124658|ref|XP_015879189.1| (PREDICTED: uncharacterized protein LOC107415389 [Ziziphus jujuba])

HSP 1 Score: 322.4 bits (825), Expect = 5.1e-85
Identity = 154/183 (84.15%), Postives = 173/183 (94.54%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIE+ESRPHITLFSSPF+EP K+E++
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEMESRPHITLFSSPFIEPAKLENV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           ++NFASKQEPL LS +SIGSLP+DNN+LFL P PS+SLLQF SQLCEAM+KEG+E GEEY
Sbjct: 61  IRNFASKQEPLSLSFSSIGSLPSDNNVLFLAPTPSMSLLQFHSQLCEAMKKEGVEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SWIP+CAVAQEVP+ARMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGN 
Sbjct: 121 RQDSWIPYCAVAQEVPRARMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNN 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

The following BLAST results are available for this feature:

BLAST of CmoCh04G028530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G028530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVB2_CUCSA	1.4e-94	96.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630940 PE=4 SV=1	[more]
M5X3Z2_PRUPE	2.1e-85	84.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012091mg PE=4 SV=1	[more]
B9RUD3_RICCO	6.7e-84	84.62	Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0851860 PE=4 SV...	[more]
D7TWT6_VITVI	2.8e-82	82.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01700 PE=4 SV=...	[more]
A0A0D2SR81_GOSRA	2.4e-81	80.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G028500 PE=4 SV=1	[more]

BLAST of CmoCh04G028530 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40190.1	8.7e-75	69.95	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]
AT3G28140.1	1.1e-69	69.57	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]

BLAST of CmoCh04G028530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449194\|ref\|XP_004142350.1\|	2.1e-94	96.72	PREDICTED: uncharacterized protein LOC101208638 [Cucumis sativus]	[more]
gi\|658012435\|ref\|XP_008341484.1\|	1.3e-85	84.15	PREDICTED: uncharacterized protein LOC103404361 [Malus domestica]	[more]
gi\|595926694\|ref\|XP_007215044.1\|	3.0e-85	84.15	hypothetical protein PRUPE_ppa012091mg [Prunus persica]	[more]
gi\|694442756\|ref\|XP_009348029.1\|	3.9e-85	83.61	PREDICTED: uncharacterized protein LOC103939647 [Pyrus x bretschneideri]	[more]
gi\|1009124658\|ref\|XP_015879189.1\|	5.1e-85	84.15	PREDICTED: uncharacterized protein LOC107415389 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009097	cNuc_Pdiesterase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G028530.1	CmoCh04G028530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009097	RNA ligase/cyclic nucleotide phosphodiesterase	GENE3D	G3DSA:3.90.1140.10		coord: 3..130 score: 7.
IPR009097	RNA ligase/cyclic nucleotide phosphodiesterase	unknown	SSF55144	LigT-like	coord: 5..155 score: 1.07
None	No IPR available	PANTHER	PTHR36039	FAMILY NOT NAMED	coord: 1..183 score: 2.0E
None	No IPR available	PANTHER	PTHR36039:SF2	GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MMG15	coord: 1..183 score: 2.0E
None	No IPR available	PFAM	PF13563	2_5_RNA_ligase2	coord: 41..155 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G028530	Cucsa.158920	Cucumber (Gy14) v1	cgycmoB0442
CmoCh04G028530	CmaCh04G027210	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G028530	Cla010386	Watermelon (97103) v1	cmowmB646
CmoCh04G028530	Csa5G630940	Cucumber (Chinese Long) v2	cmocuB714
CmoCh04G028530	MELO3C021519	Melon (DHL92) v3.5.1	cmomeB624
CmoCh04G028530	ClCG09G018710	Watermelon (Charleston Gray)	cmowcgB608
CmoCh04G028530	CSPI05G28290	Wild cucumber (PI 183967)	cmocpiB722
CmoCh04G028530	Cp4.1LG13g08870	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G028530	MELO3C021519.2	Melon (DHL92) v3.6.1	cmomedB713
CmoCh04G028530	CsaV3_5G037360	Cucumber (Chinese Long) v3	cmocucB0846
CmoCh04G028530	Cla97C09G180210	Watermelon (97103) v2	cmowmbB772
CmoCh04G028530	Bhi06G000406	Wax gourd	cmowgoB0836
CmoCh04G028530	Carg04418	Silver-seed gourd	carcmoB0940

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G028530	Cucumber (Gy14) v2	cgybcmoB121
CmoCh04G028530	Cucumber (Gy14) v2	cgybcmoB122
CmoCh04G028530	Cucumber (Gy14) v2	cgybcmoB395
CmoCh04G028530	Cucumber (Gy14) v2	cgybcmoB625
CmoCh04G028530	Melon (DHL92) v3.6.1	cmomedB747
CmoCh04G028530	Melon (DHL92) v3.6.1	cmomedB766
CmoCh04G028530	Silver-seed gourd	carcmoB0370
CmoCh04G028530	Silver-seed gourd	carcmoB0501
CmoCh04G028530	Silver-seed gourd	carcmoB1354
CmoCh04G028530	Cucumber (Chinese Long) v3	cmocucB0801
CmoCh04G028530	Cucumber (Chinese Long) v3	cmocucB0802
CmoCh04G028530	Cucumber (Chinese Long) v3	cmocucB0824
CmoCh04G028530	Watermelon (97103) v2	cmowmbB685
CmoCh04G028530	Cucurbita moschata (Rifu)	cmocmoB073
CmoCh04G028530	Cucurbita moschata (Rifu)	cmocmoB123
CmoCh04G028530	Cucurbita moschata (Rifu)	cmocmoB185
CmoCh04G028530	Cucurbita moschata (Rifu)	cmocmoB220
CmoCh04G028530	Cucurbita moschata (Rifu)	cmocmoB261
CmoCh04G028530	Cucumber (Gy14) v1	cgycmoB0207
CmoCh04G028530	Cucumber (Gy14) v1	cgycmoB0939
CmoCh04G028530	Cucurbita maxima (Rimu)	cmacmoB266
CmoCh04G028530	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G028530	Wild cucumber (PI 183967)	cmocpiB690
CmoCh04G028530	Wild cucumber (PI 183967)	cmocpiB705
CmoCh04G028530	Cucumber (Chinese Long) v2	cmocuB680
CmoCh04G028530	Cucumber (Chinese Long) v2	cmocuB695
CmoCh04G028530	Melon (DHL92) v3.5.1	cmomeB660
CmoCh04G028530	Melon (DHL92) v3.5.1	cmomeB677
CmoCh04G028530	Watermelon (Charleston Gray)	cmowcgB611
CmoCh04G028530	Watermelon (97103) v1	cmowmB650
CmoCh04G028530	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G028530	Cucurbita pepo (Zucchini)	cmocpeB696
CmoCh04G028530	Cucurbita pepo (Zucchini)	cmocpeB704
CmoCh04G028530	Bottle gourd (USVL1VR-Ls)	cmolsiB640
CmoCh04G028530	Bottle gourd (USVL1VR-Ls)	cmolsiB641
CmoCh04G028530	Bottle gourd (USVL1VR-Ls)	cmolsiB647
CmoCh04G028530	Bottle gourd (USVL1VR-Ls)	cmolsiB688