CmoCh04G028530.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G028530.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA ligase/cyclic nucleotide phosphodiesterase family protein
Location	Cmo_Chr04 : 20349402 .. 20349953 (+)
Sequence length	552

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACAAGGTTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCCAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTCTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCCTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTCGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA

mRNA sequence

ATGTCACAAGGTTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCCAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTCTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCCTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTCGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA

Coding sequence (CDS)

ATGTCACAAGGTTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCCAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTCTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCCTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTCGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA

Homology

[Close]

BLAST of CmoCh04G028530.1 vs. TrEMBL
Match: A0A0A0KVB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630940 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.4e-94
Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQFQSQLCEAMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of CmoCh04G028530.1 vs. TrEMBL
Match: M5X3Z2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012091mg PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-85
Identity = 154/183 (84.15%), Postives = 173/183 (94.54%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP K+E++
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +K FASKQEPL LS +SIGSLP+DNN+LFL P PS+SLLQFQSQLCEA+++EG+E GEEY
Sbjct: 61  IKAFASKQEPLALSFSSIGSLPHDNNVLFLSPTPSVSLLQFQSQLCEAVKREGVEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SW+P+CAVAQEVPK RMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RTDSWVPYCAVAQEVPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of CmoCh04G028530.1 vs. TrEMBL
Match: B9RUD3_RICCO (Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0851860 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 6.7e-84
Identity = 154/182 (84.62%), Postives = 171/182 (93.96%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITL+SS F+EPTK+ESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLYSSSFVEPTKLESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VK FASKQEPLPLSL++IG LPNDNN+LFL P PS+SLLQFQSQLC+A++KEGIE  EEY
Sbjct: 61  VKTFASKQEPLPLSLSAIGGLPNDNNVLFLAPTPSLSLLQFQSQLCDALKKEGIEISEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           +  SWIP+CAVAQ+VP+AR+ EAFCVLRDLKLPVSGYA+DIGLVEFSPVRELFSFVLGN 
Sbjct: 121 KPDSWIPYCAVAQDVPRARIGEAFCVLRDLKLPVSGYAMDIGLVEFSPVRELFSFVLGNC 180

Query: 181 LE 183
           +E
Sbjct: 181 VE 182

[Close]

BLAST of CmoCh04G028530.1 vs. TrEMBL
Match: D7TWT6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01700 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.8e-82
Identity = 151/183 (82.51%), Postives = 167/183 (91.26%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSP +EP ++E+I
Sbjct: 75  MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 134

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +K+FA KQEPLPLS +SIGSLPND N+LFL P P++SLLQF SQLC+A++KEGIE GEEY
Sbjct: 135 IKSFAGKQEPLPLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 194

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SWIPHC VAQEVPK RM EAF VLRDLKLPV+GYA+DIGLVEFSPVRELFSFVL NT
Sbjct: 195 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 254

Query: 181 LEA 184
           LEA
Sbjct: 255 LEA 257

[Close]

BLAST of CmoCh04G028530.1 vs. TrEMBL
Match: A0A0D2SR81_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G028500 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.4e-81
Identity = 146/182 (80.22%), Postives = 171/182 (93.96%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGF+IELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFL+P K+ES+
Sbjct: 1   MSQGFSIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLDPAKLESV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +K+FASKQEPLPLS +SIG+ PN+NN+LFL PAP++SLLQFQ+Q+CEA++KEGIE GEE+
Sbjct: 61  IKSFASKQEPLPLSFSSIGAFPNENNVLFLSPAPTMSLLQFQAQVCEAIKKEGIEIGEEF 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           +  +WIP+C VAQEVPK RMAEAFCVLR+LKLPVSGYA+DIGLVEFSPVRE FSF LGN+
Sbjct: 121 KADAWIPYCPVAQEVPKTRMAEAFCVLRELKLPVSGYAMDIGLVEFSPVREHFSFGLGNS 180

Query: 181 LE 183
           ++
Sbjct: 181 ID 182

[Close]

BLAST of CmoCh04G028530.1 vs. TAIR10
Match: AT5G40190.1 (AT5G40190.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein)

HSP 1 Score: 276.9 bits (707), Expect = 8.7e-75
Identity = 128/183 (69.95%), Postives = 159/183 (86.89%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MS+G+AIELYFDPALENQVLKAWNV ARRQIST+LI  ESRPHITLFS+ F + T++ES+
Sbjct: 1   MSEGYAIELYFDPALENQVLKAWNVFARRQISTKLINTESRPHITLFSTSFFDSTRLESV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +KNF SKQEP+ +S ++IGS  +DNN+LFL P PS+SLLQ Q+QLC+ ++KE ++ GEEY
Sbjct: 61  IKNFVSKQEPISISFSTIGSFSSDNNVLFLSPTPSLSLLQLQTQLCDMLKKESVDIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R+ SW+P C VA +VPK+RMAEAF VLRDLKLPV+GY ++IGLVEFSPVRE+FSF LGNT
Sbjct: 121 RVDSWVPFCPVALDVPKSRMAEAFSVLRDLKLPVNGYGMEIGLVEFSPVREVFSFPLGNT 180

Query: 181 LEA 184
           LE+
Sbjct: 181 LES 183

[Close]

BLAST of CmoCh04G028530.1 vs. TAIR10
Match: AT3G28140.1 (AT3G28140.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein)

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-69
Identity = 128/184 (69.57%), Postives = 154/184 (83.70%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF-LEPTKVES 60
           MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS+   ++ TK+E 
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVFARRQISTYLINNESRPHITLFSTTSSIDSTKLEP 60

Query: 61  IVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEE 120
           I+K+F+SKQEP+ LS +SIGS  +D+N LFL P PS+SL+Q Q QLCE ++KEG E GEE
Sbjct: 61  IIKSFSSKQEPISLSFSSIGSFSSDDNALFLSPTPSLSLIQLQLQLCEVIKKEGFEIGEE 120

Query: 121 YRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN 180
           YR+ SW+P C+VA +VPK+R++E F VLRDLKL V GYA+DIGLVEFSPVRE+FSF LGN
Sbjct: 121 YRVDSWVPFCSVAVDVPKSRISEGFLVLRDLKLLVYGYAMDIGLVEFSPVREVFSFGLGN 180

Query: 181 TLEA 184
            LE+
Sbjct: 181 NLES 184

[Close]

BLAST of CmoCh04G028530.1 vs. NCBI nr
Match: gi|449449194|ref|XP_004142350.1| (PREDICTED: uncharacterized protein LOC101208638 [Cucumis sativus])

HSP 1 Score: 353.6 bits (906), Expect = 2.1e-94
Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQFQSQLCEAMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of CmoCh04G028530.1 vs. NCBI nr
Match: gi|658012435|ref|XP_008341484.1| (PREDICTED: uncharacterized protein LOC103404361 [Malus domestica])

HSP 1 Score: 324.3 bits (830), Expect = 1.3e-85
Identity = 154/183 (84.15%), Postives = 172/183 (93.99%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MS+G+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP K+E++
Sbjct: 3   MSEGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 62

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           ++ FASKQEPL LS +SIGSLPNDNN+LFL P PS+SLLQFQSQLCEAM+KEG+E GEEY
Sbjct: 63  IRTFASKQEPLALSFSSIGSLPNDNNVLFLSPTPSVSLLQFQSQLCEAMKKEGVEIGEEY 122

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R   W+P+CAVAQEVPK RMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGNT
Sbjct: 123 RTDCWVPYCAVAQEVPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 182

Query: 181 LEA 184
           +EA
Sbjct: 183 VEA 185

[Close]

BLAST of CmoCh04G028530.1 vs. NCBI nr
Match: gi|595926694|ref|XP_007215044.1| (hypothetical protein PRUPE_ppa012091mg [Prunus persica])

HSP 1 Score: 323.2 bits (827), Expect = 3.0e-85
Identity = 154/183 (84.15%), Postives = 173/183 (94.54%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP K+E++
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +K FASKQEPL LS +SIGSLP+DNN+LFL P PS+SLLQFQSQLCEA+++EG+E GEEY
Sbjct: 61  IKAFASKQEPLALSFSSIGSLPHDNNVLFLSPTPSVSLLQFQSQLCEAVKREGVEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SW+P+CAVAQEVPK RMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RTDSWVPYCAVAQEVPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of CmoCh04G028530.1 vs. NCBI nr
Match: gi|694442756|ref|XP_009348029.1| (PREDICTED: uncharacterized protein LOC103939647 [Pyrus x bretschneideri])

HSP 1 Score: 322.8 bits (826), Expect = 3.9e-85
Identity = 153/183 (83.61%), Postives = 171/183 (93.44%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MS+G+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP K+E++
Sbjct: 1   MSEGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           ++ FASKQEPL LS +SIGSLPNDNN+LFL P PS+SLLQFQSQLCEAM+KEG+E GEEY
Sbjct: 61  IRTFASKQEPLALSFSSIGSLPNDNNVLFLSPTPSVSLLQFQSQLCEAMKKEGVEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R   W+P+CAVAQE PK RMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RTDCWVPYCAVAQEAPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of CmoCh04G028530.1 vs. NCBI nr
Match: gi|1009124658|ref|XP_015879189.1| (PREDICTED: uncharacterized protein LOC107415389 [Ziziphus jujuba])

HSP 1 Score: 322.4 bits (825), Expect = 5.1e-85
Identity = 154/183 (84.15%), Postives = 173/183 (94.54%), Query Frame = 1


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIE+ESRPHITLFSSPF+EP K+E++
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEMESRPHITLFSSPFIEPAKLENV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           ++NFASKQEPL LS +SIGSLP+DNN+LFL P PS+SLLQF SQLCEAM+KEG+E GEEY
Sbjct: 61  IRNFASKQEPLSLSFSSIGSLPSDNNVLFLAPTPSMSLLQFHSQLCEAMKKEGVEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SWIP+CAVAQEVP+ARMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGN 
Sbjct: 121 RQDSWIPYCAVAQEVPRARMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNN 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

The following BLAST results are available for this feature:

BLAST of CmoCh04G028530.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G028530.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVB2_CUCSA	1.4e-94	96.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630940 PE=4 SV=1	[more]
M5X3Z2_PRUPE	2.1e-85	84.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012091mg PE=4 SV=1	[more]
B9RUD3_RICCO	6.7e-84	84.62	Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0851860 PE=4 SV...	[more]
D7TWT6_VITVI	2.8e-82	82.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01700 PE=4 SV=...	[more]
A0A0D2SR81_GOSRA	2.4e-81	80.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G028500 PE=4 SV=1	[more]

BLAST of CmoCh04G028530.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40190.1	8.7e-75	69.95	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]
AT3G28140.1	1.1e-69	69.57	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]

BLAST of CmoCh04G028530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449194\|ref\|XP_004142350.1\|	2.1e-94	96.72	PREDICTED: uncharacterized protein LOC101208638 [Cucumis sativus]	[more]
gi\|658012435\|ref\|XP_008341484.1\|	1.3e-85	84.15	PREDICTED: uncharacterized protein LOC103404361 [Malus domestica]	[more]
gi\|595926694\|ref\|XP_007215044.1\|	3.0e-85	84.15	hypothetical protein PRUPE_ppa012091mg [Prunus persica]	[more]
gi\|694442756\|ref\|XP_009348029.1\|	3.9e-85	83.61	PREDICTED: uncharacterized protein LOC103939647 [Pyrus x bretschneideri]	[more]
gi\|1009124658\|ref\|XP_015879189.1\|	5.1e-85	84.15	PREDICTED: uncharacterized protein LOC107415389 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009097	cNuc_Pdiesterase

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G028530	CmoCh04G028530	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G028530.1	CmoCh04G028530.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G028530.1.exon.1	CmoCh04G028530.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G028530.1.CDS.1	CmoCh04G028530.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009097	RNA ligase/cyclic nucleotide phosphodiesterase	GENE3D	G3DSA:3.90.1140.10		coord: 3..130 score: 7.
IPR009097	RNA ligase/cyclic nucleotide phosphodiesterase	unknown	SSF55144	LigT-like	coord: 5..155 score: 1.07
None	No IPR available	PANTHER	PTHR36039	FAMILY NOT NAMED	coord: 1..183 score: 2.0E
None	No IPR available	PANTHER	PTHR36039:SF2	GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MMG15	coord: 1..183 score: 2.0E
None	No IPR available	PFAM	PF13563	2_5_RNA_ligase2	coord: 41..155 score: 5.0